RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 CKBP12277 381 aa1.95□□□□□ -2.1
USP3-209ENST00000558925 ALAS1P13196 640 aa1.95□□□□□ -2.1
USP3-209ENST00000558925 PECAM1P16284 738 aaPredicted RBP1.95□□□□□ -2.1
USP3-209ENST00000558925 GNAT2P19087 354 aa1.95□□□□□ -2.1
USP3-209ENST00000558925 BTF3P20290 206 aaKnown RBP1.95□□□□□ -2.1
USP3-209ENST00000558925 ACVR2AP27037 513 aa1.95□□□□□ -2.1
USP3-209ENST00000558925 IL1R2P27930 398 aa1.95□□□□□ -2.1
USP3-209ENST00000558925 APOBEC3AP31941 199 aaPredicted RBP1.95□□□□□ -2.1
USP3-209ENST00000558925 SERPINF1P36955 418 aa1.95□□□□□ -2.1
USP3-209ENST00000558925 MAPK9P45984 424 aa1.95□□□□□ -2.1
USP3-209ENST00000558925 PTDSS1P48651 473 aaKnown RBP1.95□□□□□ -2.1
USP3-209ENST00000558925 LILRA4P59901 499 aa1.95□□□□□ -2.1
USP3-209ENST00000558925 FOXL1Q12952 345 aa1.95□□□□□ -2.1
USP3-209ENST00000558925 GRM1Q13255 1194 aa1.95□□□□□ -2.1
USP3-209ENST00000558925 SPARCL1Q14515 664 aa1.95□□□□□ -2.1
USP3-209ENST00000558925 GRM7Q14831 915 aa1.95□□□□□ -2.1
USP3-209ENST00000558925 RALBP1Q15311 655 aa1.95□□□□□ -2.1
USP3-209ENST00000558925 ELAVL1Q15717 326 aaKnown RBP1.95□□□□□ -2.1
USP3-209ENST00000558925 PTCHD3Q3KNS1 767 aa1.95□□□□□ -2.1
USP3-209ENST00000558925 ZACNQ401N2 412 aa1.95□□□□□ -2.1
USP3-209ENST00000558925 PLA1AQ53H76 456 aa1.95□□□□□ -2.1
USP3-209ENST00000558925 TMTC4Q5T4D3 741 aa1.95□□□□□ -2.1
USP3-209ENST00000558925 RAP1GAP2Q684P5 730 aa1.95□□□□□ -2.1
USP3-209ENST00000558925 SPTY2D1Q68D10 685 aaPredicted RBP1.95□□□□□ -2.1
USP3-209ENST00000558925 FCRL6Q6DN72 434 aa1.95□□□□□ -2.1
USP3-209ENST00000558925 SULT6B1Q6IMI4 303 aa1.95□□□□□ -2.1
USP3-209ENST00000558925 EFCAB12Q6NXP0 572 aa1.95□□□□□ -2.1
USP3-209ENST00000558925 TAPT1Q6NXT6 567 aa1.95□□□□□ -2.1
USP3-209ENST00000558925 TAF2Q6P1X5 1199 aa1.95□□□□□ -2.1
USP3-209ENST00000558925 FBXO38Q6PIJ6 1188 aa1.95□□□□□ -2.1
USP3-209ENST00000558925 LVRNQ6Q4G3 990 aa1.95□□□□□ -2.1
USP3-209ENST00000558925 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP1.95□□□□□ -2.1
USP3-209ENST00000558925 CATSPERGQ6ZRH7 1159 aa1.95□□□□□ -2.1
USP3-209ENST00000558925 Q6ZRM9 215 aa1.95□□□□□ -2.1
USP3-209ENST00000558925 RNF44Q7L0R7 432 aa1.95□□□□□ -2.1
USP3-209ENST00000558925 DOK3Q7L591 496 aa1.95□□□□□ -2.1
USP3-209ENST00000558925 SMAP1Q8IYB5 467 aaPredicted RBP1.95□□□□□ -2.1
USP3-209ENST00000558925 CFAP52Q8N1V2 620 aa1.95□□□□□ -2.1
USP3-209ENST00000558925 D2HGDHQ8N465 521 aa1.95□□□□□ -2.1
USP3-209ENST00000558925 VGLL2Q8N8G2 317 aa1.95□□□□□ -2.1
USP3-209ENST00000558925 SPATA5Q8NB90 893 aa1.95□□□□□ -2.1
USP3-209ENST00000558925 NLGN4YQ8NFZ3 816 aaPredicted RBP1.95□□□□□ -2.1
USP3-209ENST00000558925 OR1N1Q8NGS0 311 aa1.95□□□□□ -2.1
USP3-209ENST00000558925 ZFP28Q8NHY6 868 aa1.95□□□□□ -2.1
USP3-209ENST00000558925 SCAMP4Q969E2 229 aa1.95□□□□□ -2.1
USP3-209ENST00000558925 SPSB4Q96A44 273 aa1.95□□□□□ -2.1
USP3-209ENST00000558925 MESP1Q9BRJ9 268 aa1.95□□□□□ -2.1
USP3-209ENST00000558925 TMEM120AQ9BXJ8 343 aa1.95□□□□□ -2.1
USP3-209ENST00000558925 DDX24Q9GZR7 859 aaKnown RBP eCLIP1.95□□□□□ -2.1
USP3-209ENST00000558925 MAF1Q9H063 256 aa1.95□□□□□ -2.1
USP3-209ENST00000558925 PRDM13Q9H4Q3 707 aa1.95□□□□□ -2.1
USP3-209ENST00000558925 MLXIPQ9HAP2 919 aa1.95□□□□□ -2.1
USP3-209ENST00000558925 A1CFQ9NQ94 594 aaKnown RBP1.95□□□□□ -2.1
USP3-209ENST00000558925 SERHLQ9NQF3 203 aa1.95□□□□□ -2.1
USP3-209ENST00000558925 ADARB2Q9NS39 739 aaKnown RBP1.95□□□□□ -2.1
USP3-209ENST00000558925 PLA2G3Q9NZ20 509 aa1.95□□□□□ -2.1
USP3-209ENST00000558925 RGL1Q9NZL6 768 aa1.95□□□□□ -2.1
USP3-209ENST00000558925 POGKQ9P215 609 aa1.95□□□□□ -2.1
USP3-209ENST00000558925 HESX1Q9UBX0 185 aa1.95□□□□□ -2.1
USP3-209ENST00000558925 HDAC5Q9UQL6 1122 aa1.95□□□□□ -2.1
USP3-209ENST00000558925 LZTS1Q9Y250 596 aa1.95□□□□□ -2.1
USP3-209ENST00000558925 PMS2P1A4D2B8 440 aa1.94□□□□□ -2.1
USP3-209ENST00000558925 TISP43B9A030 160 aa1.94□□□□□ -2.1
USP3-209ENST00000558925 B9A039 149 aa1.94□□□□□ -2.1
USP3-209ENST00000558925 MYO1CO00159 1063 aa1.94□□□□□ -2.1
USP3-209ENST00000558925 EIF3FO00303 357 aaPredicted RBP1.94□□□□□ -2.1
USP3-209ENST00000558925 PCDH17O14917 1159 aa1.94□□□□□ -2.1
USP3-209ENST00000558925 RRP9O43818 475 aaKnown RBP1.94□□□□□ -2.1
USP3-209ENST00000558925 EIF5BO60841 1220 aaKnown RBP1.94□□□□□ -2.1
USP3-209ENST00000558925 USP1O94782 785 aa1.94□□□□□ -2.1
USP3-209ENST00000558925 ONECUT2O95948 504 aa1.94□□□□□ -2.1
USP3-209ENST00000558925 ANXA1P04083 346 aa1.94□□□□□ -2.1
USP3-209ENST00000558925 PYGLP06737 847 aa1.94□□□□□ -2.1
USP3-209ENST00000558925 ELANEP08246 267 aa1.94□□□□□ -2.1
USP3-209ENST00000558925 DHRS4L1P0CG22 281 aa1.94□□□□□ -2.1
USP3-209ENST00000558925 JUPP14923 745 aa1.94□□□□□ -2.1
USP3-209ENST00000558925 CD53P19397 219 aa1.94□□□□□ -2.1
USP3-209ENST00000558925 FGFR4P22455 802 aa1.94□□□□□ -2.1
USP3-209ENST00000558925 GCSHP23434 173 aa1.94□□□□□ -2.1
USP3-209ENST00000558925 YY1P25490 414 aa1.94□□□□□ -2.1
USP3-209ENST00000558925 KLRK1P26718 216 aa1.94□□□□□ -2.1
USP3-209ENST00000558925 NTSR1P30989 418 aa1.94□□□□□ -2.1
USP3-209ENST00000558925 HIBADHP31937 336 aaKnown RBP1.94□□□□□ -2.1
USP3-209ENST00000558925 ATICP31939 592 aa1.94□□□□□ -2.1
USP3-209ENST00000558925 VIPR2P41587 438 aa1.94□□□□□ -2.1
USP3-209ENST00000558925 CPT1AP50416 773 aa1.94□□□□□ -2.1
USP3-209ENST00000558925 RABGGTBP53611 331 aa1.94□□□□□ -2.1
USP3-209ENST00000558925 PRKAA2P54646 552 aa1.94□□□□□ -2.1
USP3-209ENST00000558925 RNASE9P60153 205 aaKnown RBP1.94□□□□□ -2.1
USP3-209ENST00000558925 POU6F2P78424 691 aaPredicted RBP1.94□□□□□ -2.1
USP3-209ENST00000558925 HSD11B2P80365 405 aa1.94□□□□□ -2.1
USP3-209ENST00000558925 NHLH2Q02577 135 aa1.94□□□□□ -2.1
USP3-209ENST00000558925 OCA2Q04671 838 aa1.94□□□□□ -2.1
USP3-209ENST00000558925 POU5F1BQ06416 359 aa1.94□□□□□ -2.1
USP3-209ENST00000558925 TCF15Q12870 199 aa1.94□□□□□ -2.1
USP3-209ENST00000558925 PRKG1Q13976 671 aa1.94□□□□□ -2.1
USP3-209ENST00000558925 SLC29A2Q14542 456 aa1.94□□□□□ -2.1
USP3-209ENST00000558925 SLC4A8Q2Y0W8 1093 aa1.94□□□□□ -2.1
USP3-209ENST00000558925 SLC44A4Q53GD3 710 aa1.94□□□□□ -2.1
USP3-209ENST00000558925 ALFQ53S48 1182 aa1.94□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms