RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 TRPV4Q9HBA0 871 aa9.22□□□□□ -0.93
USP3-208ENST00000558285 ARHGEF3Q9NR81 526 aa9.22□□□□□ -0.93
USP3-208ENST00000558285 COMMD8Q9NX08 183 aa9.22□□□□□ -0.93
USP3-208ENST00000558285 CEP72Q9P209 647 aa9.22□□□□□ -0.93
USP3-208ENST00000558285 GTF3C4Q9UKN8 822 aa9.22□□□□□ -0.93
USP3-208ENST00000558285 VWA8A3KMH1 1905 aa9.22□□□□□ -0.93
USP3-208ENST00000558285 TRAV19A0A0A6YYK7 116 aa9.22□□□□□ -0.93
USP3-208ENST00000558285 A0A1W2PRU2 124 aa9.22□□□□□ -0.93
USP3-208ENST00000558285 AKAP3O75969 853 aa9.22□□□□□ -0.93
USP3-208ENST00000558285 ASS1P00966 412 aaKnown RBP9.22□□□□□ -0.93
USP3-208ENST00000558285 HLA-DRAP01903 254 aa9.22□□□□□ -0.93
USP3-208ENST00000558285 CFHP08603 1231 aa9.22□□□□□ -0.93
USP3-208ENST00000558285 PDGFRBP09619 1106 aa9.22□□□□□ -0.93
USP3-208ENST00000558285 CEBPBP17676 345 aa9.22□□□□□ -0.93
USP3-208ENST00000558285 PTPN1P18031 435 aaKnown RBP9.22□□□□□ -0.93
USP3-208ENST00000558285 TBXAS1P24557 533 aaPredicted RBP9.22□□□□□ -0.93
USP3-208ENST00000558285 ACAT1P24752 427 aaKnown RBP9.22□□□□□ -0.93
USP3-208ENST00000558285 NOP14P78316 857 aaKnown RBP9.22□□□□□ -0.93
USP3-208ENST00000558285 PAK1Q13153 545 aa9.22□□□□□ -0.93
USP3-208ENST00000558285 PHLDB3Q6NSJ2 640 aa9.22□□□□□ -0.93
USP3-208ENST00000558285 FAM171BQ6P995 826 aa9.22□□□□□ -0.93
USP3-208ENST00000558285 DENND5BQ6ZUT9 1274 aa9.22□□□□□ -0.93
USP3-208ENST00000558285 HFE2Q6ZVN8 426 aa9.22□□□□□ -0.93
USP3-208ENST00000558285 FILIP1Q7Z7B0 1213 aa9.22□□□□□ -0.93
USP3-208ENST00000558285 TADA2BQ86TJ2 420 aa9.22□□□□□ -0.93
USP3-208ENST00000558285 CELF5Q8N6W0 485 aaKnown RBP9.22□□□□□ -0.93
USP3-208ENST00000558285 MLKLQ8NB16 471 aa9.22□□□□□ -0.93
USP3-208ENST00000558285 FLCNQ8NFG4 579 aa9.22□□□□□ -0.93
USP3-208ENST00000558285 CCDC26Q8TAB7 109 aa9.22□□□□□ -0.93
USP3-208ENST00000558285 CXorf38Q8TB03 319 aa9.22□□□□□ -0.93
USP3-208ENST00000558285 MYLPFQ96A32 169 aa9.22□□□□□ -0.93
USP3-208ENST00000558285 FAM122AQ96E09 287 aa9.22□□□□□ -0.93
USP3-208ENST00000558285 CHAMP1Q96JM3 812 aa9.22□□□□□ -0.93
USP3-208ENST00000558285 C8orf48Q96LL4 319 aa9.22□□□□□ -0.93
USP3-208ENST00000558285 ASB16Q96NS5 453 aa9.22□□□□□ -0.93
USP3-208ENST00000558285 IER2Q9BTL4 223 aa9.22□□□□□ -0.93
USP3-208ENST00000558285 NT5C1AQ9BXI3 368 aa9.22□□□□□ -0.93
USP3-208ENST00000558285 TRPV5Q9NQA5 729 aa9.22□□□□□ -0.93
USP3-208ENST00000558285 TRPM5Q9NZQ8 1165 aa9.22□□□□□ -0.93
USP3-208ENST00000558285 MAGED2Q9UNF1 606 aaPredicted RBP9.22□□□□□ -0.93
USP3-208ENST00000558285 BDP1A6H8Y1 2624 aa9.22□□□□□ -0.93
USP3-208ENST00000558285 PTPRJQ12913 1337 aa9.21□□□□□ -0.93
USP3-208ENST00000558285 P4HA2O15460 535 aa9.21□□□□□ -0.94
USP3-208ENST00000558285 NOL4O94818 638 aa9.21□□□□□ -0.94
USP3-208ENST00000558285 USP17L7P0C7H9 530 aa9.21□□□□□ -0.94
USP3-208ENST00000558285 GCLMP48507 274 aa9.21□□□□□ -0.94
USP3-208ENST00000558285 CASP4P49662 377 aa9.21□□□□□ -0.94
USP3-208ENST00000558285 MLLT6P55198 1093 aaPredicted RBP9.21□□□□□ -0.94
USP3-208ENST00000558285 WNT7BP56706 349 aa9.21□□□□□ -0.94
USP3-208ENST00000558285 GOLGA8FQ08AF8 430 aa9.21□□□□□ -0.94
USP3-208ENST00000558285 GOLGA8DPQ0D2H9 430 aa9.21□□□□□ -0.94
USP3-208ENST00000558285 SYCP1Q15431 976 aa9.21□□□□□ -0.94
USP3-208ENST00000558285 TEAD2Q15562 447 aa9.21□□□□□ -0.94
USP3-208ENST00000558285 ZCWPW2Q504Y3 356 aa9.21□□□□□ -0.94
USP3-208ENST00000558285 MDH1BQ5I0G3 518 aa9.21□□□□□ -0.94
USP3-208ENST00000558285 CT47A1Q5JQC4 288 aaPredicted RBP9.21□□□□□ -0.94
USP3-208ENST00000558285 FAM78AQ5JUQ0 283 aa9.21□□□□□ -0.94
USP3-208ENST00000558285 PARM1Q6UWI2 310 aa9.21□□□□□ -0.94
USP3-208ENST00000558285 ZNF852Q6ZMS4 543 aa9.21□□□□□ -0.94
USP3-208ENST00000558285 LIMS2Q7Z4I7 341 aa9.21□□□□□ -0.94
USP3-208ENST00000558285 DDX42Q86XP3 938 aaKnown RBP eCLIP9.21□□□□□ -0.94
USP3-208ENST00000558285 MFSD6LQ8IWD5 586 aa9.21□□□□□ -0.94
USP3-208ENST00000558285 OVCA2Q8WZ82 227 aa9.21□□□□□ -0.94
USP3-208ENST00000558285 KHSRPQ92945 711 aaKnown RBP eCLIP9.21□□□□□ -0.943e-7■■■□□ 15.1
USP3-208ENST00000558285 MYRFLQ96LU7 910 aa9.21□□□□□ -0.94
USP3-208ENST00000558285 KXD1Q9BQD3 176 aa9.21□□□□□ -0.94
USP3-208ENST00000558285 BCO2Q9BYV7 579 aa9.21□□□□□ -0.94
USP3-208ENST00000558285 OSBPL6Q9BZF3 934 aa9.21□□□□□ -0.94
USP3-208ENST00000558285 FBXO44Q9H4M3 255 aa9.21□□□□□ -0.94
USP3-208ENST00000558285 C8orf33Q9H7E9 229 aaPredicted RBP9.21□□□□□ -0.94
USP3-208ENST00000558285 MMRN2Q9H8L6 949 aa9.21□□□□□ -0.94
USP3-208ENST00000558285 DMAP1Q9NPF5 467 aaPredicted RBP9.21□□□□□ -0.94
USP3-208ENST00000558285 RAB20Q9NX57 234 aa9.21□□□□□ -0.94
USP3-208ENST00000558285 MAN1B1Q9UKM7 699 aa9.21□□□□□ -0.94
USP3-208ENST00000558285 DENND4AQ7Z401 1863 aa9.21□□□□□ -0.94
USP3-208ENST00000558285 SLC38A8A6NNN8 435 aa9.2□□□□□ -0.94
USP3-208ENST00000558285 CHADO15335 359 aa9.2□□□□□ -0.94
USP3-208ENST00000558285 CST3P01034 146 aaPredicted RBP9.2□□□□□ -0.94
USP3-208ENST00000558285 CYP2F1P24903 491 aa9.2□□□□□ -0.94
USP3-208ENST00000558285 AVPR2P30518 371 aa9.2□□□□□ -0.94
USP3-208ENST00000558285 NLRP12P59046 1061 aa9.2□□□□□ -0.94
USP3-208ENST00000558285 PSMC1P62191 440 aaKnown RBP9.2□□□□□ -0.94
USP3-208ENST00000558285 NR1H3Q13133 447 aa9.2□□□□□ -0.94
USP3-208ENST00000558285 MLF2Q15773 248 aaPredicted RBP9.2□□□□□ -0.94
USP3-208ENST00000558285 SLC5A9Q2M3M2 681 aa9.2□□□□□ -0.94
USP3-208ENST00000558285 DNTTIP2Q5QJE6 756 aaKnown RBP9.2□□□□□ -0.94
USP3-208ENST00000558285 KLHL10Q6JEL2 608 aa9.2□□□□□ -0.94
USP3-208ENST00000558285 LRRTM3Q86VH5 581 aa9.2□□□□□ -0.94
USP3-208ENST00000558285 KIAA1958Q8N8K9 716 aa9.2□□□□□ -0.94
USP3-208ENST00000558285 SHKBP1Q8TBC3 707 aa9.2□□□□□ -0.94
USP3-208ENST00000558285 GIPC2Q8TF65 315 aa9.2□□□□□ -0.94
USP3-208ENST00000558285 KBTBD7Q8WVZ9 684 aa9.2□□□□□ -0.94
USP3-208ENST00000558285 NELFBQ8WX92 580 aa9.2□□□□□ -0.94
USP3-208ENST00000558285 FGF14Q92915 247 aa9.2□□□□□ -0.94
USP3-208ENST00000558285 ASIC4Q96FT7 647 aa9.2□□□□□ -0.94
USP3-208ENST00000558285 PCED1BQ96HM7 432 aa9.2□□□□□ -0.94
USP3-208ENST00000558285 TMEM209Q96SK2 561 aa9.2□□□□□ -0.94
USP3-208ENST00000558285 MRPL45Q9BRJ2 306 aaKnown RBP9.2□□□□□ -0.94
USP3-208ENST00000558285 NACA2Q9H009 215 aa9.2□□□□□ -0.94
USP3-208ENST00000558285 XYLT2Q9H1B5 865 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms