RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 ACOT2P49753 483 aa17.04■□□□□ 0.32
SHMT2-231ENST00000557433 OTUD4Q01804 1114 aaKnown RBP17.04■□□□□ 0.32
SHMT2-231ENST00000557433 PRKCEQ02156 737 aa17.04■□□□□ 0.32
SHMT2-231ENST00000557433 TBCCQ15814 346 aa17.04■□□□□ 0.32
SHMT2-231ENST00000557433 FNBP1LQ5T0N5 605 aa17.04■□□□□ 0.32
SHMT2-231ENST00000557433 TMEM154Q6P9G4 183 aa17.04■□□□□ 0.32
SHMT2-231ENST00000557433 SLC30A9Q6PML9 568 aa17.04■□□□□ 0.32
SHMT2-231ENST00000557433 LRRC74BQ6ZQY2 392 aa17.04■□□□□ 0.32
SHMT2-231ENST00000557433 TRMT1LQ7Z2T5 733 aaKnown RBP17.04■□□□□ 0.32
SHMT2-231ENST00000557433 MFN1Q8IWA4 741 aa17.04■□□□□ 0.32
SHMT2-231ENST00000557433 MTMR14Q8NCE2 650 aa17.04■□□□□ 0.32
SHMT2-231ENST00000557433 ZFAND2BQ8WV99 257 aa17.04■□□□□ 0.32
SHMT2-231ENST00000557433 SLC44A1Q8WWI5 657 aa17.04■□□□□ 0.32
SHMT2-231ENST00000557433 MRRFQ96E11 262 aaKnown RBP17.04■□□□□ 0.32
SHMT2-231ENST00000557433 TMEM120AQ9BXJ8 343 aa17.04■□□□□ 0.32
SHMT2-231ENST00000557433 TMEM134Q9H6X4 195 aa17.04■□□□□ 0.32
SHMT2-231ENST00000557433 PNPLA8Q9NP80 782 aa17.04■□□□□ 0.32
SHMT2-231ENST00000557433 KCNK4Q9NYG8 393 aa17.04■□□□□ 0.32
SHMT2-231ENST00000557433 DNAJB4Q9UDY4 337 aa17.04■□□□□ 0.32
SHMT2-231ENST00000557433 ANGPTL2Q9UKU9 493 aa17.04■□□□□ 0.32
SHMT2-231ENST00000557433 CNTNAP2Q9UHC6 1331 aa17.04■□□□□ 0.32
SHMT2-231ENST00000557433 RARBP10826 455 aa17.04■□□□□ 0.32
SHMT2-231ENST00000557433 KCNA2P16389 499 aa17.04■□□□□ 0.32
SHMT2-231ENST00000557433 PEX19P40855 299 aa17.04■□□□□ 0.32
SHMT2-231ENST00000557433 YWHAEP62258 255 aaKnown RBP17.04■□□□□ 0.32
SHMT2-231ENST00000557433 OGDHQ02218 1023 aa17.04■□□□□ 0.32
SHMT2-231ENST00000557433 EMC2Q15006 297 aa17.04■□□□□ 0.32
SHMT2-231ENST00000557433 SWSAP1Q6NVH7 229 aa17.04■□□□□ 0.32
SHMT2-231ENST00000557433 DHX37Q8IY37 1157 aaKnown RBP17.04■□□□□ 0.32
SHMT2-231ENST00000557433 DEPTORQ8TB45 409 aa17.04■□□□□ 0.32
SHMT2-231ENST00000557433 RAB3IL1Q8TBN0 382 aa17.04■□□□□ 0.32
SHMT2-231ENST00000557433 MSTO1Q9BUK6 570 aa17.04■□□□□ 0.32
SHMT2-231ENST00000557433 KCNK13Q9HB14 408 aa17.04■□□□□ 0.32
SHMT2-231ENST00000557433 JPH1Q9HDC5 661 aaPredicted RBP17.04■□□□□ 0.32
SHMT2-231ENST00000557433 WDR35Q9P2L0 1181 aa17.04■□□□□ 0.32
SHMT2-231ENST00000557433 SLC17A7Q9P2U7 560 aa17.04■□□□□ 0.32
SHMT2-231ENST00000557433 ZNF541Q9H0D2 1346 aa17.03■□□□□ 0.32
SHMT2-231ENST00000557433 YDJCA8MPS7 323 aa17.03■□□□□ 0.32
SHMT2-231ENST00000557433 GOLGA8SH3BPF8 625 aa17.03■□□□□ 0.32
SHMT2-231ENST00000557433 GOLGA8MH3BSY2 632 aa17.03■□□□□ 0.32
SHMT2-231ENST00000557433 K7ERI5 159 aa17.03■□□□□ 0.32
SHMT2-231ENST00000557433 INHBAP08476 426 aa17.03■□□□□ 0.32
SHMT2-231ENST00000557433 WEE2P0C1S8 567 aa17.03■□□□□ 0.32
SHMT2-231ENST00000557433 SP100P23497 879 aaPredicted RBP17.03■□□□□ 0.32
SHMT2-231ENST00000557433 STIP1P31948 543 aaKnown RBP17.03■□□□□ 0.32
SHMT2-231ENST00000557433 SOX10P56693 466 aa17.03■□□□□ 0.32
SHMT2-231ENST00000557433 ZNF200P98182 395 aaPredicted RBP17.03■□□□□ 0.32
SHMT2-231ENST00000557433 SLC25A11Q02978 314 aaKnown RBP17.03■□□□□ 0.32
SHMT2-231ENST00000557433 PTK7Q13308 1070 aa17.03■□□□□ 0.32
SHMT2-231ENST00000557433 ACAP1Q15027 740 aa17.03■□□□□ 0.32
SHMT2-231ENST00000557433 EFTUD2Q15029 972 aaKnown RBP eCLIP17.03■□□□□ 0.324e-8■■■■■ 44
SHMT2-231ENST00000557433 SURF1Q15526 300 aa17.03■□□□□ 0.32
SHMT2-231ENST00000557433 ACSBG2Q5FVE4 666 aa17.03■□□□□ 0.32
SHMT2-231ENST00000557433 LGSNQ5TDP6 509 aa17.03■□□□□ 0.32
SHMT2-231ENST00000557433 RFWD3Q6PCD5 774 aa17.03■□□□□ 0.32
SHMT2-231ENST00000557433 DSTYKQ6XUX3 929 aa17.03■□□□□ 0.32
SHMT2-231ENST00000557433 WDR49Q8IV35 697 aa17.03■□□□□ 0.32
SHMT2-231ENST00000557433 CCDC110Q8TBZ0 833 aa17.03■□□□□ 0.32
SHMT2-231ENST00000557433 HAUS1Q96CS2 278 aa17.03■□□□□ 0.32
SHMT2-231ENST00000557433 OXNAD1Q96HP4 312 aaPredicted RBP17.03■□□□□ 0.32
SHMT2-231ENST00000557433 C7orf26Q96N11 449 aa17.03■□□□□ 0.32
SHMT2-231ENST00000557433 PORCNQ9H237 461 aa17.03■□□□□ 0.32
SHMT2-231ENST00000557433 CNTN3Q9P232 1028 aa17.03■□□□□ 0.32
SHMT2-231ENST00000557433 XPO7Q9UIA9 1087 aaKnown RBP17.03■□□□□ 0.32
SHMT2-231ENST00000557433 SIP14410 1827 aa17.02■□□□□ 0.32
SHMT2-231ENST00000557433 ADGRA2Q96PE1 1338 aa17.02■□□□□ 0.32
SHMT2-231ENST00000557433 WDR91A4D1P6 747 aa17.02■□□□□ 0.32
SHMT2-231ENST00000557433 MAGEA13PA6NCF6 341 aa17.02■□□□□ 0.32
SHMT2-231ENST00000557433 APOC4-APOC2K7ER74 178 aa17.02■□□□□ 0.32
SHMT2-231ENST00000557433 MAP3K7O43318 606 aa17.02■□□□□ 0.32
SHMT2-231ENST00000557433 CST8O60676 142 aa17.02■□□□□ 0.32
SHMT2-231ENST00000557433 SMIM24O75264 130 aa17.02■□□□□ 0.32
SHMT2-231ENST00000557433 APOC2P02655 101 aa17.02■□□□□ 0.32
SHMT2-231ENST00000557433 NR3C2P08235 984 aa17.02■□□□□ 0.32
SHMT2-231ENST00000557433 PDHA1P08559 390 aa17.02■□□□□ 0.32
SHMT2-231ENST00000557433 PSMA2P25787 234 aa17.02■□□□□ 0.32
SHMT2-231ENST00000557433 SERPINB3P29508 390 aa17.02■□□□□ 0.32
SHMT2-231ENST00000557433 WNT7BP56706 349 aa17.02■□□□□ 0.32
SHMT2-231ENST00000557433 SARNPP82979 210 aaKnown RBP17.02■□□□□ 0.32
SHMT2-231ENST00000557433 OVGP1Q12889 678 aa17.02■□□□□ 0.32
SHMT2-231ENST00000557433 KPNB1Q14974 876 aaKnown RBP17.02■□□□□ 0.32
SHMT2-231ENST00000557433 RBBP5Q15291 538 aaKnown RBP17.02■□□□□ 0.32
SHMT2-231ENST00000557433 BBS9Q3SYG4 887 aa17.02■□□□□ 0.32
SHMT2-231ENST00000557433 MSS51Q4VC12 460 aa17.02■□□□□ 0.32
SHMT2-231ENST00000557433 C6orf163Q5TEZ5 329 aa17.02■□□□□ 0.32
SHMT2-231ENST00000557433 ANKRD22Q5VYY1 191 aa17.02■□□□□ 0.32
SHMT2-231ENST00000557433 SH2D5Q6ZV89 423 aa17.02■□□□□ 0.32
SHMT2-231ENST00000557433 TMPRSS6Q8IU80 811 aa17.02■□□□□ 0.32
SHMT2-231ENST00000557433 SCG3Q8WXD2 468 aaKnown RBP17.02■□□□□ 0.32
SHMT2-231ENST00000557433 GMLQ99445 158 aa17.02■□□□□ 0.32
SHMT2-231ENST00000557433 NIF3L1Q9GZT8 377 aa17.02■□□□□ 0.32
SHMT2-231ENST00000557433 LHX5Q9H2C1 402 aa17.02■□□□□ 0.32
SHMT2-231ENST00000557433 HOMER2Q9NSB8 354 aa17.02■□□□□ 0.32
SHMT2-231ENST00000557433 MKS1Q9NXB0 559 aa17.02■□□□□ 0.32
SHMT2-231ENST00000557433 TAS2R1Q9NYW7 299 aa17.02■□□□□ 0.32
SHMT2-231ENST00000557433 SLC9A2Q9UBY0 812 aa17.02■□□□□ 0.32
SHMT2-231ENST00000557433 ZNF180Q9UJW8 692 aa17.02■□□□□ 0.32
SHMT2-231ENST00000557433 I3L4J1 428 aa17.02■□□□□ 0.31
SHMT2-231ENST00000557433 CAPN9O14815 690 aa17.02■□□□□ 0.31
SHMT2-231ENST00000557433 MCF2LO15068 1137 aa17.02■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms