RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 CCDC160A6NGH7 325 aa12.71□□□□□ -0.37
CCDC88C-211ENST00000556726 A8MXQ7 604 aa12.71□□□□□ -0.37
CCDC88C-211ENST00000556726 MAFGO15525 162 aa12.71□□□□□ -0.37
CCDC88C-211ENST00000556726 DCTN3O75935 186 aa12.71□□□□□ -0.37
CCDC88C-211ENST00000556726 NFICP08651 508 aa12.71□□□□□ -0.37
CCDC88C-211ENST00000556726 UNGP13051 313 aaPredicted RBP12.71□□□□□ -0.37
CCDC88C-211ENST00000556726 GEMIN4P57678 1058 aaKnown RBP12.71□□□□□ -0.37
CCDC88C-211ENST00000556726 NCALDP61601 193 aa12.71□□□□□ -0.37
CCDC88C-211ENST00000556726 FKBP1AP62942 108 aaKnown RBP12.71□□□□□ -0.37
CCDC88C-211ENST00000556726 ITIH4Q14624 930 aa12.71□□□□□ -0.37
CCDC88C-211ENST00000556726 IL31Q6EBC2 164 aa12.71□□□□□ -0.37
CCDC88C-211ENST00000556726 CES3Q6UWW8 571 aa12.71□□□□□ -0.37
CCDC88C-211ENST00000556726 SUGP1Q8IWZ8 645 aaKnown RBP12.71□□□□□ -0.37
CCDC88C-211ENST00000556726 MAGEB18Q96M61 343 aa12.71□□□□□ -0.37
CCDC88C-211ENST00000556726 ZNF317Q96PQ6 595 aaPredicted RBP12.71□□□□□ -0.37
CCDC88C-211ENST00000556726 ASCC2Q9H1I8 757 aaPredicted RBP12.71□□□□□ -0.37
CCDC88C-211ENST00000556726 KIAA1551Q9HCM1 1747 aa12.71□□□□□ -0.37
CCDC88C-211ENST00000556726 CFAP73A6NFT4 308 aa12.71□□□□□ -0.38
CCDC88C-211ENST00000556726 KBTBD13C9JR72 458 aa12.71□□□□□ -0.38
CCDC88C-211ENST00000556726 AP1B1Q10567 949 aa12.71□□□□□ -0.38
CCDC88C-211ENST00000556726 TSNAXIP1Q2TAA8 658 aa12.71□□□□□ -0.38
CCDC88C-211ENST00000556726 NXNQ6DKJ4 435 aa12.71□□□□□ -0.38
CCDC88C-211ENST00000556726 ISLR2Q6UXK2 745 aa12.71□□□□□ -0.38
CCDC88C-211ENST00000556726 MON1BQ7L1V2 547 aa12.71□□□□□ -0.38
CCDC88C-211ENST00000556726 NIPA1Q7RTP0 329 aa12.71□□□□□ -0.38
CCDC88C-211ENST00000556726 YTHDF3Q7Z739 585 aaKnown RBP12.71□□□□□ -0.38
CCDC88C-211ENST00000556726 PCGF5Q86SE9 256 aa12.71□□□□□ -0.38
CCDC88C-211ENST00000556726 DCLK2Q8N568 766 aa12.71□□□□□ -0.38
CCDC88C-211ENST00000556726 AAASQ9NRG9 546 aa12.71□□□□□ -0.38
CCDC88C-211ENST00000556726 USP18Q9UMW8 372 aa12.71□□□□□ -0.38
CCDC88C-211ENST00000556726 ADM5C9JUS6 153 aa12.7□□□□□ -0.38
CCDC88C-211ENST00000556726 NPM3O75607 178 aaKnown RBP12.7□□□□□ -0.38
CCDC88C-211ENST00000556726 PTPN20Q4JDL3 420 aa12.7□□□□□ -0.38
CCDC88C-211ENST00000556726 ABHD15Q6UXT9 468 aa12.7□□□□□ -0.38
CCDC88C-211ENST00000556726 LMNTD2Q8IXW0 634 aa12.7□□□□□ -0.38
CCDC88C-211ENST00000556726 AVENQ9NQS1 362 aaPredicted RBP12.7□□□□□ -0.38
CCDC88C-211ENST00000556726 SLC17A7Q9P2U7 560 aa12.7□□□□□ -0.38
CCDC88C-211ENST00000556726 ARAP2Q8WZ64 1704 aa12.7□□□□□ -0.38
CCDC88C-211ENST00000556726 LOC100653049A0A140TA62 436 aa12.7□□□□□ -0.38
CCDC88C-211ENST00000556726 ENTPD5O75356 428 aa12.7□□□□□ -0.38
CCDC88C-211ENST00000556726 CIB2O75838 187 aa12.7□□□□□ -0.38
CCDC88C-211ENST00000556726 KRT34O76011 436 aa12.7□□□□□ -0.38
CCDC88C-211ENST00000556726 STAG3L1P0CL83 205 aa12.7□□□□□ -0.38
CCDC88C-211ENST00000556726 RPL22P35268 128 aaKnown RBP12.7□□□□□ -0.38
CCDC88C-211ENST00000556726 EFNA5P52803 228 aa12.7□□□□□ -0.38
CCDC88C-211ENST00000556726 ZNF200P98182 395 aaPredicted RBP12.7□□□□□ -0.38
CCDC88C-211ENST00000556726 OGDHQ02218 1023 aa12.7□□□□□ -0.38
CCDC88C-211ENST00000556726 C1QBPQ07021 282 aaKnown RBP12.7□□□□□ -0.38
CCDC88C-211ENST00000556726 FAAP100Q0VG06 881 aa12.7□□□□□ -0.38
CCDC88C-211ENST00000556726 NFIL3Q16649 462 aa12.7□□□□□ -0.38
CCDC88C-211ENST00000556726 KBTBD12Q3ZCT8 623 aa12.7□□□□□ -0.38
CCDC88C-211ENST00000556726 TAS1R3Q7RTX0 852 aa12.7□□□□□ -0.38
CCDC88C-211ENST00000556726 ANKS1BQ7Z6G8 1248 aa12.7□□□□□ -0.38
CCDC88C-211ENST00000556726 NUDCD3Q8IVD9 361 aa12.7□□□□□ -0.38
CCDC88C-211ENST00000556726 PPIL6Q8IXY8 311 aa12.7□□□□□ -0.38
CCDC88C-211ENST00000556726 HACE1Q8IYU2 909 aa12.7□□□□□ -0.38
CCDC88C-211ENST00000556726 DDX1Q92499 740 aaKnown RBP12.7□□□□□ -0.38
CCDC88C-211ENST00000556726 FERMT1Q9BQL6 677 aa12.7□□□□□ -0.38
CCDC88C-211ENST00000556726 TRIM56Q9BRZ2 755 aaKnown RBP12.7□□□□□ -0.38
CCDC88C-211ENST00000556726 MECRQ9BV79 373 aa12.7□□□□□ -0.38
CCDC88C-211ENST00000556726 OSBPL1AQ9BXW6 950 aa12.7□□□□□ -0.38
CCDC88C-211ENST00000556726 MANSC1Q9H8J5 431 aa12.7□□□□□ -0.38
CCDC88C-211ENST00000556726 FBXO6Q9NRD1 293 aaPredicted RBP12.7□□□□□ -0.38
CCDC88C-211ENST00000556726 DDX56Q9NY93 547 aaKnown RBP12.7□□□□□ -0.38
CCDC88C-211ENST00000556726 STRCQ7RTU9 1775 aa12.7□□□□□ -0.38
CCDC88C-211ENST00000556726 ATRNL1Q5VV63 1379 aa12.7□□□□□ -0.38
CCDC88C-211ENST00000556726 ENO4A6NNW6 628 aa12.7□□□□□ -0.38
CCDC88C-211ENST00000556726 SNRPFP62306 86 aaKnown RBP12.7□□□□□ -0.38
CCDC88C-211ENST00000556726 FAM47CQ5HY64 1035 aa12.7□□□□□ -0.38
CCDC88C-211ENST00000556726 RPAINQ86UA6 219 aa12.7□□□□□ -0.38
CCDC88C-211ENST00000556726 ECHDC2Q86YB7 292 aa12.7□□□□□ -0.38
CCDC88C-211ENST00000556726 C12orf56Q8IXR9 622 aa12.7□□□□□ -0.38
CCDC88C-211ENST00000556726 SLC25A41Q8N5S1 370 aa12.7□□□□□ -0.38
CCDC88C-211ENST00000556726 CPXM1Q96SM3 734 aa12.7□□□□□ -0.38
CCDC88C-211ENST00000556726 PDGFCQ9NRA1 345 aa12.7□□□□□ -0.38
CCDC88C-211ENST00000556726 ARHGAP28Q9P2N2 729 aa12.7□□□□□ -0.38
CCDC88C-211ENST00000556726 SPDYE16A6NNV3 312 aaPredicted RBP12.69□□□□□ -0.38
CCDC88C-211ENST00000556726 E5RJQ4 531 aa12.69□□□□□ -0.38
CCDC88C-211ENST00000556726 H3BRJ5 948 aa12.69□□□□□ -0.38
CCDC88C-211ENST00000556726 KRT37O76014 449 aa12.69□□□□□ -0.38
CCDC88C-211ENST00000556726 DDNO94850 711 aaPredicted RBP12.69□□□□□ -0.38
CCDC88C-211ENST00000556726 F7P08709 466 aaPredicted RBP12.69□□□□□ -0.38
CCDC88C-211ENST00000556726 WDR4P57081 412 aaKnown RBP12.69□□□□□ -0.38
CCDC88C-211ENST00000556726 KLHL38Q2WGJ6 581 aa12.69□□□□□ -0.38
CCDC88C-211ENST00000556726 ZC3H12AQ5D1E8 599 aaKnown RBP12.69□□□□□ -0.38
CCDC88C-211ENST00000556726 RSPH3Q86UC2 560 aa12.69□□□□□ -0.38
CCDC88C-211ENST00000556726 KATNAL2Q8IYT4 538 aa12.69□□□□□ -0.38
CCDC88C-211ENST00000556726 NDUFAF2Q8N183 169 aa12.69□□□□□ -0.38
CCDC88C-211ENST00000556726 MMP19Q99542 508 aa12.69□□□□□ -0.38
CCDC88C-211ENST00000556726 APOL2Q9BQE5 337 aa12.69□□□□□ -0.38
CCDC88C-211ENST00000556726 LPIN3Q9BQK8 851 aa12.69□□□□□ -0.38
CCDC88C-211ENST00000556726 UNKQ9C0B0 810 aaKnown RBP12.69□□□□□ -0.38
CCDC88C-211ENST00000556726 KLC2Q9H0B6 622 aa12.69□□□□□ -0.38
CCDC88C-211ENST00000556726 ADAM7Q9H2U9 754 aa12.69□□□□□ -0.38
CCDC88C-211ENST00000556726 IL1RAPL1Q9NZN1 696 aa12.69□□□□□ -0.38
CCDC88C-211ENST00000556726 HMGXB4Q9UGU5 601 aa12.69□□□□□ -0.38
CCDC88C-211ENST00000556726 AFG3L2Q9Y4W6 797 aa12.69□□□□□ -0.38
CCDC88C-211ENST00000556726 LACTBL1A8MY62 500 aa12.69□□□□□ -0.38
CCDC88C-211ENST00000556726 ZC3H11AO75152 810 aaKnown RBP eCLIP12.69□□□□□ -0.38
CCDC88C-211ENST00000556726 RGS20O76081 388 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms