RNA–Protein interactions for RNA: ENST00000554976.5

TDP1-210, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 3,040 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-210ENST00000554976 TSEN2Q8NCE0 465 aaKnown RBP9.39□□□□□ -0.91
TDP1-210ENST00000554976 UBA3Q8TBC4 463 aa9.39□□□□□ -0.91
TDP1-210ENST00000554976 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP9.39□□□□□ -0.918e-7■■■■■ 32.1
TDP1-210ENST00000554976 RGS18Q9NS28 235 aa9.39□□□□□ -0.91
TDP1-210ENST00000554976 ESYT3A0FGR9 886 aa9.39□□□□□ -0.91
TDP1-210ENST00000554976 C2CD4BA6NLJ0 364 aa9.39□□□□□ -0.91
TDP1-210ENST00000554976 H3BQF6 201 aa9.39□□□□□ -0.91
TDP1-210ENST00000554976 XPOTO43592 962 aaKnown RBP9.39□□□□□ -0.91
TDP1-210ENST00000554976 CD19P15391 556 aa9.39□□□□□ -0.91
TDP1-210ENST00000554976 CHRNA3P32297 505 aa9.39□□□□□ -0.91
TDP1-210ENST00000554976 FAM189BP81408 668 aa9.39□□□□□ -0.91
TDP1-210ENST00000554976 GUCY2DQ02846 1103 aa9.39□□□□□ -0.91
TDP1-210ENST00000554976 ADCY2Q08462 1091 aa9.39□□□□□ -0.91
TDP1-210ENST00000554976 PPP2R5EQ16537 467 aa9.39□□□□□ -0.91
TDP1-210ENST00000554976 KCTD19Q17RG1 926 aaPredicted RBP9.39□□□□□ -0.91
TDP1-210ENST00000554976 EMBQ6PCB8 327 aa9.39□□□□□ -0.91
TDP1-210ENST00000554976 ZDHHC24Q6UX98 284 aa9.39□□□□□ -0.91
TDP1-210ENST00000554976 ARCQ7LC44 396 aa9.39□□□□□ -0.91
TDP1-210ENST00000554976 IFT20Q8IY31 132 aa9.39□□□□□ -0.91
TDP1-210ENST00000554976 CRIPAKQ8N1N5 446 aa9.39□□□□□ -0.91
TDP1-210ENST00000554976 GADD45GIP1Q8TAE8 222 aaPredicted RBP9.39□□□□□ -0.91
TDP1-210ENST00000554976 HINFPQ9BQA5 517 aa9.39□□□□□ -0.91
TDP1-210ENST00000554976 RTP3Q9BQQ7 232 aa9.39□□□□□ -0.91
TDP1-210ENST00000554976 CYLDQ9NQC7 956 aa9.39□□□□□ -0.91
TDP1-210ENST00000554976 PAK6Q9NQU5 681 aaPredicted RBP9.39□□□□□ -0.91
TDP1-210ENST00000554976 METTL5Q9NRN9 209 aaKnown RBP9.39□□□□□ -0.91
TDP1-210ENST00000554976 GRHL1Q9NZI5 618 aa9.39□□□□□ -0.91
TDP1-210ENST00000554976 CACNG4Q9UBN1 327 aa9.39□□□□□ -0.91
TDP1-210ENST00000554976 PTCH2Q9Y6C5 1203 aa9.39□□□□□ -0.91
TDP1-210ENST00000554976 GREB1Q4ZG55 1949 aa9.39□□□□□ -0.91
TDP1-210ENST00000554976 KIAA1671Q9BY89 1806 aa9.39□□□□□ -0.91
TDP1-210ENST00000554976 FAM187AA6NFU0 413 aa9.39□□□□□ -0.91
TDP1-210ENST00000554976 E5RJQ4 531 aa9.39□□□□□ -0.91
TDP1-210ENST00000554976 SCNN1AP37088 669 aa9.39□□□□□ -0.91
TDP1-210ENST00000554976 COILP38432 576 aaPredicted RBP9.39□□□□□ -0.91
TDP1-210ENST00000554976 FNTAP49354 379 aa9.39□□□□□ -0.91
TDP1-210ENST00000554976 CLCNKBP51801 687 aa9.39□□□□□ -0.91
TDP1-210ENST00000554976 DRG2P55039 364 aaKnown RBP9.39□□□□□ -0.91
TDP1-210ENST00000554976 ATP13A4Q4VNC1 1196 aa9.39□□□□□ -0.91
TDP1-210ENST00000554976 FAM47CQ5HY64 1035 aa9.39□□□□□ -0.91
TDP1-210ENST00000554976 RAET1EQ8TD07 263 aa9.39□□□□□ -0.91
TDP1-210ENST00000554976 PEBP4Q96S96 227 aa9.39□□□□□ -0.91
TDP1-210ENST00000554976 GAD1Q99259 594 aa9.39□□□□□ -0.91
TDP1-210ENST00000554976 PAAF1Q9BRP4 392 aa9.39□□□□□ -0.91
TDP1-210ENST00000554976 ADAM33Q9BZ11 813 aa9.39□□□□□ -0.91
TDP1-210ENST00000554976 R3HDM2Q9Y2K5 976 aaKnown RBP9.39□□□□□ -0.91
TDP1-210ENST00000554976 CEP83Q9Y592 693 aa9.39□□□□□ -0.91
TDP1-210ENST00000554976 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.39□□□□□ -0.91
TDP1-210ENST00000554976 SYF2O95926 243 aaKnown RBP9.38□□□□□ -0.91
TDP1-210ENST00000554976 GHRP10912 638 aa9.38□□□□□ -0.91
TDP1-210ENST00000554976 CCDC130P13994 396 aa9.38□□□□□ -0.91
TDP1-210ENST00000554976 MNX1P50219 401 aaPredicted RBP9.38□□□□□ -0.91
TDP1-210ENST00000554976 PSMC1P62191 440 aaKnown RBP9.38□□□□□ -0.91
TDP1-210ENST00000554976 HTRA3P83110 453 aa9.38□□□□□ -0.91
TDP1-210ENST00000554976 PAK2Q13177 524 aa9.38□□□□□ -0.91
TDP1-210ENST00000554976 CUL1Q13616 776 aa9.38□□□□□ -0.91
TDP1-210ENST00000554976 ACAP1Q15027 740 aa9.38□□□□□ -0.91
TDP1-210ENST00000554976 TERF2Q15554 542 aa9.38□□□□□ -0.91
TDP1-210ENST00000554976 RAB6CQ53S08 254 aa9.38□□□□□ -0.91
TDP1-210ENST00000554976 JAMLQ86YT9 394 aa9.38□□□□□ -0.91
TDP1-210ENST00000554976 ADGRF2Q8IZF7 708 aa9.38□□□□□ -0.91
TDP1-210ENST00000554976 FAM71BQ8TC56 605 aa9.38□□□□□ -0.91
TDP1-210ENST00000554976 TRIM51Q9BSJ1 452 aa9.38□□□□□ -0.91
TDP1-210ENST00000554976 DCLK3Q9C098 648 aa9.38□□□□□ -0.91
TDP1-210ENST00000554976 RAB6CQ9H0N0 254 aa9.38□□□□□ -0.91
TDP1-210ENST00000554976 TRPV6Q9H1D0 765 aa9.38□□□□□ -0.91
TDP1-210ENST00000554976 TSPYL2Q9H2G4 693 aaPredicted RBP9.38□□□□□ -0.91
TDP1-210ENST00000554976 SLC38A7Q9NVC3 462 aa9.38□□□□□ -0.91
TDP1-210ENST00000554976 NFU1Q9UMS0 254 aa9.38□□□□□ -0.91
TDP1-210ENST00000554976 C9IYK1 514 aa9.38□□□□□ -0.91
TDP1-210ENST00000554976 PAPSS1O43252 624 aaPredicted RBP9.38□□□□□ -0.91
TDP1-210ENST00000554976 B4GALT3O60512 393 aa9.38□□□□□ -0.91
TDP1-210ENST00000554976 CYP11A1P05108 521 aa9.38□□□□□ -0.91
TDP1-210ENST00000554976 KRT3P12035 628 aa9.38□□□□□ -0.91
TDP1-210ENST00000554976 CDKN2BP42772 138 aa9.38□□□□□ -0.91
TDP1-210ENST00000554976 ZNF143P52747 638 aaPredicted RBP9.38□□□□□ -0.91
TDP1-210ENST00000554976 CCDC142Q17RM4 750 aa9.38□□□□□ -0.91
TDP1-210ENST00000554976 TCTN1Q2MV58 587 aa9.38□□□□□ -0.91
TDP1-210ENST00000554976 MAP9Q49MG5 647 aa9.38□□□□□ -0.91
TDP1-210ENST00000554976 CCDC70Q6NSX1 233 aa9.38□□□□□ -0.91
TDP1-210ENST00000554976 ECHDC2Q86YB7 292 aa9.38□□□□□ -0.91
TDP1-210ENST00000554976 FAM126BQ8IXS8 530 aa9.38□□□□□ -0.91
TDP1-210ENST00000554976 ANKRD52Q8NB46 1076 aa9.38□□□□□ -0.91
TDP1-210ENST00000554976 APPL2Q8NEU8 664 aa9.38□□□□□ -0.91
TDP1-210ENST00000554976 CENPIQ92674 756 aaPredicted RBP9.38□□□□□ -0.91
TDP1-210ENST00000554976 HNRNPABQ99729 332 aaKnown RBP9.38□□□□□ -0.91
TDP1-210ENST00000554976 SH3GL2Q99962 352 aa9.38□□□□□ -0.91
TDP1-210ENST00000554976 CHST7Q9NS84 486 aa9.38□□□□□ -0.91
TDP1-210ENST00000554976 FEZ2Q9UHY8 353 aaPredicted RBP9.38□□□□□ -0.91
TDP1-210ENST00000554976 hCG_1818297A0A087WSY0 165 aa9.37□□□□□ -0.91
TDP1-210ENST00000554976 M0QZQ0 153 aa9.37□□□□□ -0.91
TDP1-210ENST00000554976 PODXLO00592 558 aa9.37□□□□□ -0.91
TDP1-210ENST00000554976 RALAP11233 206 aa9.37□□□□□ -0.91
TDP1-210ENST00000554976 IVDP26440 423 aa9.37□□□□□ -0.91
TDP1-210ENST00000554976 GRK4P32298 578 aa9.37□□□□□ -0.91
TDP1-210ENST00000554976 RPL9P32969 192 aaKnown RBP9.37□□□□□ -0.91
TDP1-210ENST00000554976 GNL1P36915 607 aaPredicted RBP9.37□□□□□ -0.91
TDP1-210ENST00000554976 HSPA9P38646 679 aaKnown RBP9.37□□□□□ -0.91
TDP1-210ENST00000554976 SCNN1GP51170 649 aa9.37□□□□□ -0.91
TDP1-210ENST00000554976 COPS2P61201 443 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms