RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 PKDCCQ504Y2 493 aa13.43□□□□□ -0.26
VIPAS39-206ENST00000553888 FAM182AQ5T1J6 154 aa13.43□□□□□ -0.26
VIPAS39-206ENST00000553888 WSCD1Q658N2 575 aa13.43□□□□□ -0.26
VIPAS39-206ENST00000553888 ADGRF2Q8IZF7 708 aa13.43□□□□□ -0.26
VIPAS39-206ENST00000553888 APPL2Q8NEU8 664 aa13.43□□□□□ -0.26
VIPAS39-206ENST00000553888 CAVIN3Q969G5 261 aa13.43□□□□□ -0.26
VIPAS39-206ENST00000553888 MCRS1Q96EZ8 462 aa13.43□□□□□ -0.26
VIPAS39-206ENST00000553888 OSBPL8Q9BZF1 889 aa13.43□□□□□ -0.26
VIPAS39-206ENST00000553888 CD48P09326 243 aa13.42□□□□□ -0.26
VIPAS39-206ENST00000553888 CHRNA3P32297 505 aa13.42□□□□□ -0.26
VIPAS39-206ENST00000553888 MAN1A1P33908 653 aa13.42□□□□□ -0.26
VIPAS39-206ENST00000553888 RPL21P46778 160 aaKnown RBP13.42□□□□□ -0.26
VIPAS39-206ENST00000553888 GABRB2P47870 512 aa13.42□□□□□ -0.26
VIPAS39-206ENST00000553888 TRIM71Q2Q1W2 868 aaKnown RBP13.42□□□□□ -0.26
VIPAS39-206ENST00000553888 DUPD1Q68J44 220 aa13.42□□□□□ -0.26
VIPAS39-206ENST00000553888 RNF180Q86T96 592 aa13.42□□□□□ -0.26
VIPAS39-206ENST00000553888 PCSK9Q8NBP7 692 aaKnown RBP13.42□□□□□ -0.26
VIPAS39-206ENST00000553888 HASPINQ8TF76 798 aa13.42□□□□□ -0.26
VIPAS39-206ENST00000553888 ZNF296Q8WUU4 475 aaPredicted RBP13.42□□□□□ -0.26
VIPAS39-206ENST00000553888 ZNF560Q96MR9 790 aa13.42□□□□□ -0.26
VIPAS39-206ENST00000553888 SLITRK1Q96PX8 696 aa13.42□□□□□ -0.26
VIPAS39-206ENST00000553888 ERP44Q9BS26 406 aa13.42□□□□□ -0.26
VIPAS39-206ENST00000553888 TSPYL2Q9H2G4 693 aaPredicted RBP13.42□□□□□ -0.26
VIPAS39-206ENST00000553888 SNX25Q9H3E2 840 aa13.42□□□□□ -0.26
VIPAS39-206ENST00000553888 MTUS1Q9ULD2 1270 aa13.42□□□□□ -0.26
VIPAS39-206ENST00000553888 INPP5FQ9Y2H2 1132 aa13.42□□□□□ -0.26
VIPAS39-206ENST00000553888 ZNF638Q14966 1978 aaKnown RBP13.42□□□□□ -0.26
VIPAS39-206ENST00000553888 F8W810 466 aa13.42□□□□□ -0.26
VIPAS39-206ENST00000553888 KLF1Q13351 362 aaPredicted RBP13.42□□□□□ -0.26
VIPAS39-206ENST00000553888 CYP1B1Q16678 543 aa13.42□□□□□ -0.26
VIPAS39-206ENST00000553888 KIAA0319Q5VV43 1072 aa13.42□□□□□ -0.26
VIPAS39-206ENST00000553888 LHX8Q68G74 356 aa13.42□□□□□ -0.26
VIPAS39-206ENST00000553888 SLC2A14Q8TDB8 520 aa13.42□□□□□ -0.26
VIPAS39-206ENST00000553888 SH3TC2Q8TF17 1288 aa13.42□□□□□ -0.26
VIPAS39-206ENST00000553888 NDRG1Q92597 394 aaKnown RBP13.42□□□□□ -0.26
VIPAS39-206ENST00000553888 ADAM2Q99965 735 aa13.42□□□□□ -0.26
VIPAS39-206ENST00000553888 GDAP2Q9NXN4 497 aa13.42□□□□□ -0.26
VIPAS39-206ENST00000553888 PCYOX1Q9UHG3 505 aa13.42□□□□□ -0.26
VIPAS39-206ENST00000553888 FAN1Q9Y2M0 1017 aa13.42□□□□□ -0.26
VIPAS39-206ENST00000553888 LRRD1A4D1F6 860 aa13.41□□□□□ -0.26
VIPAS39-206ENST00000553888 CYB561D2O14569 222 aa13.41□□□□□ -0.26
VIPAS39-206ENST00000553888 GPR182O15218 404 aa13.41□□□□□ -0.26
VIPAS39-206ENST00000553888 TFE3P19532 575 aaPredicted RBP13.41□□□□□ -0.26
VIPAS39-206ENST00000553888 SLC25A11Q02978 314 aaKnown RBP13.41□□□□□ -0.26
VIPAS39-206ENST00000553888 PIGHQ14442 188 aaPredicted RBP13.41□□□□□ -0.26
VIPAS39-206ENST00000553888 ZNF268Q14587 947 aaPredicted RBP13.41□□□□□ -0.26
VIPAS39-206ENST00000553888 UBAP2Q5T6F2 1119 aaKnown RBP13.41□□□□□ -0.26
VIPAS39-206ENST00000553888 PIK3R5Q8WYR1 880 aa13.41□□□□□ -0.26
VIPAS39-206ENST00000553888 CFAP57Q96MR6 1250 aa13.41□□□□□ -0.26
VIPAS39-206ENST00000553888 SAE1Q9UBE0 346 aaPredicted RBP13.41□□□□□ -0.26
VIPAS39-206ENST00000553888 XPOTO43592 962 aaKnown RBP13.41□□□□□ -0.26
VIPAS39-206ENST00000553888 HUS1O60921 280 aa13.41□□□□□ -0.26
VIPAS39-206ENST00000553888 VPS41P49754 854 aa13.41□□□□□ -0.26
VIPAS39-206ENST00000553888 PLTPP55058 493 aa13.41□□□□□ -0.26
VIPAS39-206ENST00000553888 ATP11AP98196 1134 aa13.41□□□□□ -0.26
VIPAS39-206ENST00000553888 MBTPS1Q14703 1052 aa13.41□□□□□ -0.26
VIPAS39-206ENST00000553888 SV2CQ496J9 727 aa13.41□□□□□ -0.26
VIPAS39-206ENST00000553888 EXD1Q8NHP7 514 aa13.41□□□□□ -0.26
VIPAS39-206ENST00000553888 SLC35F5Q8WV83 523 aa13.41□□□□□ -0.26
VIPAS39-206ENST00000553888 SEC14L1Q92503 715 aa13.41□□□□□ -0.26
VIPAS39-206ENST00000553888 ZIM3Q96PE6 472 aa13.41□□□□□ -0.26
VIPAS39-206ENST00000553888 PEBP4Q96S96 227 aa13.41□□□□□ -0.26
VIPAS39-206ENST00000553888 DCLK3Q9C098 648 aa13.41□□□□□ -0.26
VIPAS39-206ENST00000553888 TET1Q8NFU7 2136 aa13.41□□□□□ -0.26
VIPAS39-206ENST00000553888 GOLGA6BA6NDN3 693 aa13.4□□□□□ -0.26
VIPAS39-206ENST00000553888 PAPSS1O43252 624 aaPredicted RBP13.4□□□□□ -0.26
VIPAS39-206ENST00000553888 BEST1O76090 585 aa13.4□□□□□ -0.26
VIPAS39-206ENST00000553888 THP07101 528 aa13.4□□□□□ -0.26
VIPAS39-206ENST00000553888 LCP1P13796 627 aa13.4□□□□□ -0.26
VIPAS39-206ENST00000553888 HSPA6P17066 643 aa13.4□□□□□ -0.26
VIPAS39-206ENST00000553888 HOXD10P28358 340 aa13.4□□□□□ -0.26
VIPAS39-206ENST00000553888 DYNLT1P63172 113 aa13.4□□□□□ -0.26
VIPAS39-206ENST00000553888 CUL1Q13616 776 aa13.4□□□□□ -0.26
VIPAS39-206ENST00000553888 DHX34Q14147 1143 aaKnown RBP13.4□□□□□ -0.26
VIPAS39-206ENST00000553888 ZDHHC24Q6UX98 284 aa13.4□□□□□ -0.26
VIPAS39-206ENST00000553888 NIPA2Q8N8Q9 360 aa13.4□□□□□ -0.26
VIPAS39-206ENST00000553888 RXFP2Q8WXD0 754 aa13.4□□□□□ -0.26
VIPAS39-206ENST00000553888 C10orf88Q9H8K7 445 aa13.4□□□□□ -0.26
VIPAS39-206ENST00000553888 VIPAS39Q9H9C1 493 aa13.4□□□□□ -0.26
VIPAS39-206ENST00000553888 GRHL1Q9NZI5 618 aa13.4□□□□□ -0.26
VIPAS39-206ENST00000553888 VPS18Q9P253 973 aa13.4□□□□□ -0.26
VIPAS39-206ENST00000553888 PTCH2Q9Y6C5 1203 aa13.4□□□□□ -0.26
VIPAS39-206ENST00000553888 A0A1W2PQ45 241 aaPredicted RBP13.4□□□□□ -0.26
VIPAS39-206ENST00000553888 A0A1W2PQY0 241 aa13.4□□□□□ -0.26
VIPAS39-206ENST00000553888 MIPP30301 263 aa13.4□□□□□ -0.26
VIPAS39-206ENST00000553888 LRPAP1P30533 357 aa13.4□□□□□ -0.26
VIPAS39-206ENST00000553888 TAP1Q03518 808 aa13.4□□□□□ -0.26
VIPAS39-206ENST00000553888 KRT17Q04695 432 aa13.4□□□□□ -0.26
VIPAS39-206ENST00000553888 UAP1Q16222 522 aaPredicted RBP13.4□□□□□ -0.26
VIPAS39-206ENST00000553888 SPOCD1Q6ZMY3 1216 aa13.4□□□□□ -0.26
VIPAS39-206ENST00000553888 OR2W6PQ8NHA6 318 aa13.4□□□□□ -0.26
VIPAS39-206ENST00000553888 FBXO25Q8TCJ0 367 aa13.4□□□□□ -0.26
VIPAS39-206ENST00000553888 HSPH1Q92598 858 aa13.4□□□□□ -0.26
VIPAS39-206ENST00000553888 KHSRPQ92945 711 aaKnown RBP eCLIP13.4□□□□□ -0.26
VIPAS39-206ENST00000553888 CCDC114Q96M63 670 aa13.4□□□□□ -0.26
VIPAS39-206ENST00000553888 PLVAPQ9BX97 442 aa13.4□□□□□ -0.26
VIPAS39-206ENST00000553888 ADAM33Q9BZ11 813 aa13.4□□□□□ -0.26
VIPAS39-206ENST00000553888 LRRC19Q9H756 370 aa13.4□□□□□ -0.26
VIPAS39-206ENST00000553888 LRRC4CQ9HCJ2 640 aa13.4□□□□□ -0.26
VIPAS39-206ENST00000553888 ZDHHC18Q9NUE0 388 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms