RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, human

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-222	ENST00000541204	TXLNG	Q9NUQ3	528 aa		13.15	□□□□□ -0.3
RNF4-222	ENST00000541204	CEP83	Q9Y592	693 aa		13.15	□□□□□ -0.3
RNF4-222	ENST00000541204	SCIN	Q9Y6U3	715 aa		13.15	□□□□□ -0.3
RNF4-222	ENST00000541204	C11orf97	A0A1B0GVM6	126 aa	Predicted RBP	13.15	□□□□□ -0.31
RNF4-222	ENST00000541204		A0A1W2PPM1	405 aa		13.15	□□□□□ -0.31
RNF4-222	ENST00000541204	GPR25	O00155	361 aa		13.15	□□□□□ -0.31
RNF4-222	ENST00000541204	MAGEB2	O15479	319 aa		13.15	□□□□□ -0.31
RNF4-222	ENST00000541204	PRPF4	O43172	522 aa	Known RBP eCLIP	13.15	□□□□□ -0.31
RNF4-222	ENST00000541204	HBP1	O60381	514 aa		13.15	□□□□□ -0.31
RNF4-222	ENST00000541204	BANF1	O75531	89 aa		13.15	□□□□□ -0.31
RNF4-222	ENST00000541204	KRT1	P04264	644 aa		13.15	□□□□□ -0.31
RNF4-222	ENST00000541204	ATP2A2	P16615	1042 aa	Known RBP	13.15	□□□□□ -0.31
RNF4-222	ENST00000541204	CA4	P22748	312 aa		13.15	□□□□□ -0.31
RNF4-222	ENST00000541204	PAX7	P23759	505 aa		13.15	□□□□□ -0.31
RNF4-222	ENST00000541204	MBTD1	Q05BQ5	628 aa		13.15	□□□□□ -0.31
RNF4-222	ENST00000541204	TFDP1	Q14186	410 aa		13.15	□□□□□ -0.31
RNF4-222	ENST00000541204	SGSM1	Q2NKQ1	1148 aa		13.15	□□□□□ -0.31
RNF4-222	ENST00000541204	TSHZ1	Q6ZSZ6	1077 aa		13.15	□□□□□ -0.31
RNF4-222	ENST00000541204	PHF13	Q86YI8	300 aa	Predicted RBP	13.15	□□□□□ -0.31
RNF4-222	ENST00000541204	KCNV2	Q8TDN2	545 aa		13.15	□□□□□ -0.31
RNF4-222	ENST00000541204	C2orf40	Q9H1Z8	148 aa		13.15	□□□□□ -0.31
RNF4-222	ENST00000541204	PARVA	Q9NVD7	372 aa		13.15	□□□□□ -0.31
RNF4-222	ENST00000541204	ERAP1	Q9NZ08	941 aa		13.15	□□□□□ -0.31
RNF4-222	ENST00000541204	TJP2	Q9UDY2	1190 aa		13.15	□□□□□ -0.31
RNF4-222	ENST00000541204	USH1C	Q9Y6N9	552 aa		13.15	□□□□□ -0.31
RNF4-222	ENST00000541204	IVNS1ABP	Q9Y6Y0	642 aa		13.15	□□□□□ -0.31
RNF4-222	ENST00000541204		F8VP50	259 aa		13.14	□□□□□ -0.31
RNF4-222	ENST00000541204	GOLGA8S	H3BPF8	625 aa		13.14	□□□□□ -0.31
RNF4-222	ENST00000541204	GOLGA8M	H3BSY2	632 aa		13.14	□□□□□ -0.31
RNF4-222	ENST00000541204	PDHX	O00330	501 aa		13.14	□□□□□ -0.31
RNF4-222	ENST00000541204	TNNC2	P02585	160 aa		13.14	□□□□□ -0.31
RNF4-222	ENST00000541204	LGALS2	P05162	132 aa		13.14	□□□□□ -0.31
RNF4-222	ENST00000541204	CETN2	P41208	172 aa		13.14	□□□□□ -0.31
RNF4-222	ENST00000541204	YARS	P54577	528 aa	Known RBP	13.14	□□□□□ -0.31
RNF4-222	ENST00000541204	NR1H3	Q13133	447 aa		13.14	□□□□□ -0.31
RNF4-222	ENST00000541204	SLC1A5	Q15758	541 aa		13.14	□□□□□ -0.31
RNF4-222	ENST00000541204	TXNRD3NB	Q6F5E7	133 aa		13.14	□□□□□ -0.31
RNF4-222	ENST00000541204	DCUN1D2	Q6PH85	259 aa		13.14	□□□□□ -0.31
RNF4-222	ENST00000541204	TRIM72	Q6ZMU5	477 aa		13.14	□□□□□ -0.31
RNF4-222	ENST00000541204	USP50	Q70EL3	339 aa	Predicted RBP	13.14	□□□□□ -0.31
RNF4-222	ENST00000541204	BZW1	Q7L1Q6	419 aa	Known RBP	13.14	□□□□□ -0.31
RNF4-222	ENST00000541204	ALLC	Q8N6M5	410 aa		13.14	□□□□□ -0.31
RNF4-222	ENST00000541204	GPRC5A	Q8NFJ5	357 aa		13.14	□□□□□ -0.31
RNF4-222	ENST00000541204	VCPIP1	Q96JH7	1222 aa		13.14	□□□□□ -0.31
RNF4-222	ENST00000541204	RAB3IP	Q96QF0	476 aa	Predicted RBP	13.14	□□□□□ -0.31
RNF4-222	ENST00000541204	FOXP3	Q9BZS1	431 aa		13.14	□□□□□ -0.31
RNF4-222	ENST00000541204	UBN1	Q9NPG3	1134 aa		13.14	□□□□□ -0.31
RNF4-222	ENST00000541204	LOC285556	D6RIA3	1793 aa		13.14	□□□□□ -0.31
RNF4-222	ENST00000541204	PIAS1	O75925	651 aa		13.14	□□□□□ -0.31
RNF4-222	ENST00000541204	TJP3	O95049	919 aa		13.14	□□□□□ -0.31
RNF4-222	ENST00000541204	C22orf31	O95567	290 aa		13.14	□□□□□ -0.31
RNF4-222	ENST00000541204	ASPA	P45381	313 aa		13.14	□□□□□ -0.31
RNF4-222	ENST00000541204	RNASEL	Q05823	741 aa	Known RBP	13.14	□□□□□ -0.31
RNF4-222	ENST00000541204	ARHGAP1	Q07960	439 aa		13.14	□□□□□ -0.31
RNF4-222	ENST00000541204	ZNF252P-AS1	Q0IIN9	211 aa		13.14	□□□□□ -0.31
RNF4-222	ENST00000541204	TMEM62	Q0P6H9	643 aa		13.14	□□□□□ -0.31
RNF4-222	ENST00000541204	PDK4	Q16654	411 aa		13.14	□□□□□ -0.31
RNF4-222	ENST00000541204	CEP128	Q6ZU80	1094 aa		13.14	□□□□□ -0.31
RNF4-222	ENST00000541204	TDRP	Q86YL5	185 aa		13.14	□□□□□ -0.31
RNF4-222	ENST00000541204	ANKMY2	Q8IV38	441 aa		13.14	□□□□□ -0.31
RNF4-222	ENST00000541204	RCOR2	Q8IZ40	523 aa		13.14	□□□□□ -0.31
RNF4-222	ENST00000541204	LRRC8C	Q8TDW0	803 aa		13.14	□□□□□ -0.31
RNF4-222	ENST00000541204	ANKRD36BP1	Q96IX9	119 aa		13.14	□□□□□ -0.31
RNF4-222	ENST00000541204	TTC25	Q96NG3	672 aa		13.14	□□□□□ -0.31
RNF4-222	ENST00000541204	TMEM121	Q9BTD3	319 aa		13.14	□□□□□ -0.31
RNF4-222	ENST00000541204	FZD8	Q9H461	694 aa		13.14	□□□□□ -0.31
RNF4-222	ENST00000541204	RPF1	Q9H9Y2	349 aa	Known RBP	13.14	□□□□□ -0.31
RNF4-222	ENST00000541204	IFT122	Q9HBG6	1241 aa		13.14	□□□□□ -0.31
RNF4-222	ENST00000541204	SLC5A4	Q9NY91	659 aa		13.14	□□□□□ -0.31
RNF4-222	ENST00000541204	IP6K2	Q9UHH9	426 aa		13.14	□□□□□ -0.31
RNF4-222	ENST00000541204		A0A0G2JMZ2	1700 aa		13.14	□□□□□ -0.31
RNF4-222	ENST00000541204	EDF1	O60869	148 aa	Known RBP	13.13	□□□□□ -0.31
RNF4-222	ENST00000541204	SKAP2	O75563	359 aa	Predicted RBP	13.13	□□□□□ -0.31
RNF4-222	ENST00000541204	IFNB1	P01574	187 aa		13.13	□□□□□ -0.31
RNF4-222	ENST00000541204	FGFR1	P11362	822 aa		13.13	□□□□□ -0.31
RNF4-222	ENST00000541204	MMP8	P22894	467 aa		13.13	□□□□□ -0.31
RNF4-222	ENST00000541204	PSMC4	P43686	418 aa		13.13	□□□□□ -0.31
RNF4-222	ENST00000541204	PLCB3	Q01970	1234 aa		13.13	□□□□□ -0.31
RNF4-222	ENST00000541204	C1QBP	Q07021	282 aa	Known RBP	13.13	□□□□□ -0.31
RNF4-222	ENST00000541204	PDIA2	Q13087	525 aa	Known RBP	13.13	□□□□□ -0.31
RNF4-222	ENST00000541204	ANKRD20A2	Q5SQ80	823 aa		13.13	□□□□□ -0.31
RNF4-222	ENST00000541204	ANKRD20A1	Q5TYW2	823 aa		13.13	□□□□□ -0.31
RNF4-222	ENST00000541204	ANKRD20A3	Q5VUR7	823 aa		13.13	□□□□□ -0.31
RNF4-222	ENST00000541204	ZNF449	Q6P9G9	518 aa		13.13	□□□□□ -0.31
RNF4-222	ENST00000541204	RBM41	Q96IZ5	413 aa	Known RBP	13.13	□□□□□ -0.31
RNF4-222	ENST00000541204	MAK16	Q9BXY0	300 aa	Known RBP	13.13	□□□□□ -0.31
RNF4-222	ENST00000541204	XYLT2	Q9H1B5	865 aa		13.13	□□□□□ -0.31
RNF4-222	ENST00000541204	PTPRH	Q9HD43	1115 aa		13.13	□□□□□ -0.31
RNF4-222	ENST00000541204	RNF19A	Q9NV58	838 aa		13.13	□□□□□ -0.31
RNF4-222	ENST00000541204	NKX1-2	Q9UD57	310 aa	Predicted RBP	13.13	□□□□□ -0.31
RNF4-222	ENST00000541204	CNTN6	Q9UQ52	1028 aa		13.13	□□□□□ -0.31
RNF4-222	ENST00000541204	DICER1	Q9UPY3	1922 aa	Known RBP	13.13	□□□□□ -0.31
RNF4-222	ENST00000541204	ASB14	A6NK59	587 aa		13.13	□□□□□ -0.31
RNF4-222	ENST00000541204	LACTBL1	A8MY62	500 aa		13.13	□□□□□ -0.31
RNF4-222	ENST00000541204	ITGB3	P05106	788 aa		13.13	□□□□□ -0.31
RNF4-222	ENST00000541204	STAG3L1	P0CL83	205 aa		13.13	□□□□□ -0.31
RNF4-222	ENST00000541204	ZNF132	P52740	706 aa		13.13	□□□□□ -0.31
RNF4-222	ENST00000541204	DENND1B	Q6P3S1	775 aa		13.13	□□□□□ -0.31
RNF4-222	ENST00000541204	DNAJC24	Q6P3W2	148 aa		13.13	□□□□□ -0.31
RNF4-222	ENST00000541204	SPOCD1	Q6ZMY3	1216 aa		13.13	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms