RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 ZBTB10Q96DT7 871 aa11.3□□□□□ -0.6
CLIP1-213ENST00000540338 KATNAL1Q9BW62 490 aa11.3□□□□□ -0.6
CLIP1-213ENST00000540338 PCDH9Q9HC56 1237 aa11.3□□□□□ -0.6
CLIP1-213ENST00000540338 ZDHHC18Q9NUE0 388 aa11.3□□□□□ -0.6
CLIP1-213ENST00000540338 GRHL1Q9NZI5 618 aa11.3□□□□□ -0.6
CLIP1-213ENST00000540338 SRRM3A6NNA2 597 aaPredicted RBP11.29□□□□□ -0.6
CLIP1-213ENST00000540338 TCP11X1B4DZS4 312 aa11.29□□□□□ -0.6
CLIP1-213ENST00000540338 GPR25O00155 361 aa11.29□□□□□ -0.6
CLIP1-213ENST00000540338 EZRP15311 586 aaKnown RBP11.29□□□□□ -0.6
CLIP1-213ENST00000540338 ZFXP17010 805 aaPredicted RBP11.29□□□□□ -0.6
CLIP1-213ENST00000540338 GNL1P36915 607 aaPredicted RBP11.29□□□□□ -0.6
CLIP1-213ENST00000540338 CTCFP49711 727 aaPredicted RBP11.29□□□□□ -0.6
CLIP1-213ENST00000540338 MBTD1Q05BQ5 628 aa11.29□□□□□ -0.6
CLIP1-213ENST00000540338 ZRSR2Q15696 482 aaKnown RBP11.29□□□□□ -0.6
CLIP1-213ENST00000540338 SLC27A1Q6PCB7 646 aa11.29□□□□□ -0.6
CLIP1-213ENST00000540338 PIK3R5Q8WYR1 880 aa11.29□□□□□ -0.6
CLIP1-213ENST00000540338 TGS1Q96RS0 853 aaKnown RBP11.29□□□□□ -0.6
CLIP1-213ENST00000540338 OSMRQ99650 979 aa11.29□□□□□ -0.6
CLIP1-213ENST00000540338 TINF2Q9BSI4 451 aa11.29□□□□□ -0.6
CLIP1-213ENST00000540338 LHX5Q9H2C1 402 aa11.29□□□□□ -0.6
CLIP1-213ENST00000540338 TRABDQ9H4I3 376 aa11.29□□□□□ -0.6
CLIP1-213ENST00000540338 NINJ2Q9NZG7 142 aa11.29□□□□□ -0.6
CLIP1-213ENST00000540338 R3HDM2Q9Y2K5 976 aaKnown RBP11.29□□□□□ -0.6
CLIP1-213ENST00000540338 LIASO43766 372 aa11.29□□□□□ -0.6
CLIP1-213ENST00000540338 ACAP1Q15027 740 aa11.29□□□□□ -0.6
CLIP1-213ENST00000540338 CDCA2Q69YH5 1023 aaPredicted RBP11.29□□□□□ -0.6
CLIP1-213ENST00000540338 CEP57Q86XR8 500 aa11.29□□□□□ -0.6
CLIP1-213ENST00000540338 CDKL3Q8IVW4 592 aaPredicted RBP11.29□□□□□ -0.6
CLIP1-213ENST00000540338 KIAA0319LQ8IZA0 1049 aa11.29□□□□□ -0.6
CLIP1-213ENST00000540338 CFAP36Q96G28 342 aa11.29□□□□□ -0.6
CLIP1-213ENST00000540338 XPO7Q9UIA9 1087 aaKnown RBP11.29□□□□□ -0.6
CLIP1-213ENST00000540338 PCDHGC3Q9UN70 934 aa11.29□□□□□ -0.6
CLIP1-213ENST00000540338 DRG1Q9Y295 367 aaKnown RBP11.29□□□□□ -0.6
CLIP1-213ENST00000540338 CFAP69A5D8W1 941 aa11.29□□□□□ -0.6
CLIP1-213ENST00000540338 KCNN4O15554 427 aa11.29□□□□□ -0.6
CLIP1-213ENST00000540338 CLDN10P78369 228 aa11.29□□□□□ -0.6
CLIP1-213ENST00000540338 RNASELQ05823 741 aaKnown RBP11.29□□□□□ -0.6
CLIP1-213ENST00000540338 TSNARE1Q96NA8 513 aa11.29□□□□□ -0.6
CLIP1-213ENST00000540338 C2CD2Q9Y426 696 aa11.29□□□□□ -0.6
CLIP1-213ENST00000540338 TRAPPC3O43617 180 aa11.29□□□□□ -0.6
CLIP1-213ENST00000540338 SPAG7O75391 227 aa11.29□□□□□ -0.6
CLIP1-213ENST00000540338 CFHP08603 1231 aa11.29□□□□□ -0.6
CLIP1-213ENST00000540338 HOXC6P09630 235 aa11.29□□□□□ -0.6
CLIP1-213ENST00000540338 PNPLA4P41247 253 aa11.29□□□□□ -0.6
CLIP1-213ENST00000540338 CPT1AP50416 773 aa11.29□□□□□ -0.6
CLIP1-213ENST00000540338 FAM133BQ5BKY9 247 aaKnown RBP11.29□□□□□ -0.6
CLIP1-213ENST00000540338 ZDHHC24Q6UX98 284 aa11.29□□□□□ -0.6
CLIP1-213ENST00000540338 POLNQ7Z5Q5 900 aa11.29□□□□□ -0.6
CLIP1-213ENST00000540338 C1orf127Q8N9H9 656 aa11.29□□□□□ -0.6
CLIP1-213ENST00000540338 SGSM3Q96HU1 749 aa11.29□□□□□ -0.6
CLIP1-213ENST00000540338 RAB6BQ9NRW1 208 aa11.29□□□□□ -0.6
CLIP1-213ENST00000540338 KLK14Q9P0G3 267 aa11.29□□□□□ -0.6
CLIP1-213ENST00000540338 STAP1Q9ULZ2 295 aa11.29□□□□□ -0.6
CLIP1-213ENST00000540338 I3L4J1 428 aa11.28□□□□□ -0.6
CLIP1-213ENST00000540338 TNPO2O14787 897 aaKnown RBP11.28□□□□□ -0.6
CLIP1-213ENST00000540338 MIPP30301 263 aa11.28□□□□□ -0.6
CLIP1-213ENST00000540338 ACADSBP45954 432 aa11.28□□□□□ -0.6
CLIP1-213ENST00000540338 PTPN20Q4JDL3 420 aa11.28□□□□□ -0.6
CLIP1-213ENST00000540338 C3orf62Q6ZUJ4 267 aa11.28□□□□□ -0.6
CLIP1-213ENST00000540338 FAM47EQ6ZV65 393 aa11.28□□□□□ -0.6
CLIP1-213ENST00000540338 METTL23Q86XA0 190 aa11.28□□□□□ -0.6
CLIP1-213ENST00000540338 TFAP2BQ92481 460 aa11.28□□□□□ -0.6
CLIP1-213ENST00000540338 SHOC2Q9UQ13 582 aa11.28□□□□□ -0.6
CLIP1-213ENST00000540338 FAM47DPA6NHR8 397 aa11.28□□□□□ -0.6
CLIP1-213ENST00000540338 C22orf31O95567 290 aa11.28□□□□□ -0.6
CLIP1-213ENST00000540338 TAF6P49848 677 aa11.28□□□□□ -0.6
CLIP1-213ENST00000540338 HUNKP57058 714 aa11.28□□□□□ -0.6
CLIP1-213ENST00000540338 AUHQ13825 339 aaKnown RBP11.28□□□□□ -0.6
CLIP1-213ENST00000540338 SV2CQ496J9 727 aa11.28□□□□□ -0.6
CLIP1-213ENST00000540338 GPR142Q7Z601 462 aa11.28□□□□□ -0.6
CLIP1-213ENST00000540338 LRRC34Q8IZ02 419 aa11.28□□□□□ -0.6
CLIP1-213ENST00000540338 VPS52Q8N1B4 723 aa11.28□□□□□ -0.6
CLIP1-213ENST00000540338 GBP7Q8N8V2 638 aaPredicted RBP11.28□□□□□ -0.6
CLIP1-213ENST00000540338 SREK1Q8WXA9 508 aaKnown RBP11.28□□□□□ -0.6
CLIP1-213ENST00000540338 SEC14L1Q92503 715 aa11.28□□□□□ -0.6
CLIP1-213ENST00000540338 CYTH2Q99418 400 aa11.28□□□□□ -0.6
CLIP1-213ENST00000540338 SYT17Q9BSW7 474 aa11.28□□□□□ -0.6
CLIP1-213ENST00000540338 PAK5Q9P286 719 aa11.28□□□□□ -0.6
CLIP1-213ENST00000540338 CPA4Q9UI42 421 aa11.28□□□□□ -0.6
CLIP1-213ENST00000540338 SMG5Q9UPR3 1016 aaKnown RBP11.28□□□□□ -0.6
CLIP1-213ENST00000540338 COL1A2P08123 1366 aa11.28□□□□□ -0.6
CLIP1-213ENST00000540338 SETSIPP0DME0 302 aa11.28□□□□□ -0.6
CLIP1-213ENST00000540338 KDELR1P24390 212 aa11.28□□□□□ -0.6
CLIP1-213ENST00000540338 CHKAP35790 457 aa11.28□□□□□ -0.6
CLIP1-213ENST00000540338 POU5F1Q01860 360 aaKnown RBP11.28□□□□□ -0.6
CLIP1-213ENST00000540338 POU5F1BQ06416 359 aa11.28□□□□□ -0.6
CLIP1-213ENST00000540338 PDK2Q15119 407 aa11.28□□□□□ -0.6
CLIP1-213ENST00000540338 ZCCHC9Q8N567 271 aaKnown RBP11.28□□□□□ -0.6
CLIP1-213ENST00000540338 CDKL2Q92772 493 aa11.28□□□□□ -0.6
CLIP1-213ENST00000540338 PSMC3IPQ9P2W1 217 aaPredicted RBP11.28□□□□□ -0.6
CLIP1-213ENST00000540338 hCG_1818297A0A087WSY0 165 aa11.27□□□□□ -0.6
CLIP1-213ENST00000540338 ZSCAN5DPP0CG00 497 aa11.27□□□□□ -0.6
CLIP1-213ENST00000540338 PECAM1P16284 738 aaPredicted RBP11.27□□□□□ -0.6
CLIP1-213ENST00000540338 AMHR2Q16671 573 aa11.27□□□□□ -0.6
CLIP1-213ENST00000540338 HEATR6Q6AI08 1181 aaKnown RBP11.27□□□□□ -0.6
CLIP1-213ENST00000540338 ATP2A3Q93084 1043 aa11.27□□□□□ -0.6
CLIP1-213ENST00000540338 NAALADL1Q9UQQ1 740 aa11.27□□□□□ -0.6
CLIP1-213ENST00000540338 GREB1LQ9C091 1923 aaPredicted RBP11.27□□□□□ -0.6
CLIP1-213ENST00000540338 TTLL13PA6NNM8 815 aa11.27□□□□□ -0.6
CLIP1-213ENST00000540338 BTBD19C9JJ37 291 aa11.27□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms