RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 TMEFF1Q8IYR6 380 aa12.51□□□□□ -0.41
CLSTN3-209ENST00000539982 MYCT1Q8N699 235 aa12.51□□□□□ -0.41
CLSTN3-209ENST00000539982 ARL14EPQ8N8R7 260 aaPredicted RBP12.51□□□□□ -0.41
CLSTN3-209ENST00000539982 SH3RF2Q8TEC5 729 aa12.51□□□□□ -0.41
CLSTN3-209ENST00000539982 LRRC15Q8TF66 581 aa12.51□□□□□ -0.41
CLSTN3-209ENST00000539982 LEO1Q8WVC0 666 aaPredicted RBP12.51□□□□□ -0.41
CLSTN3-209ENST00000539982 RLN3Q8WXF3 142 aa12.51□□□□□ -0.41
CLSTN3-209ENST00000539982 FNBP1Q96RU3 617 aa12.51□□□□□ -0.41
CLSTN3-209ENST00000539982 ACBD6Q9BR61 282 aa12.51□□□□□ -0.41
CLSTN3-209ENST00000539982 ABCB6Q9NP58 842 aa12.51□□□□□ -0.41
CLSTN3-209ENST00000539982 GCNT4Q9P109 453 aa12.51□□□□□ -0.41
CLSTN3-209ENST00000539982 ODF2LQ9ULJ1 636 aa12.51□□□□□ -0.41
CLSTN3-209ENST00000539982 ANTXRLA6NF34 631 aa12.5□□□□□ -0.41
CLSTN3-209ENST00000539982 K7ENM7 598 aa12.5□□□□□ -0.41
CLSTN3-209ENST00000539982 CAPNS1P04632 268 aa12.5□□□□□ -0.41
CLSTN3-209ENST00000539982 PTGER3P43115 390 aa12.5□□□□□ -0.41
CLSTN3-209ENST00000539982 POU5F1Q01860 360 aaKnown RBP12.5□□□□□ -0.41
CLSTN3-209ENST00000539982 BYSLQ13895 437 aaKnown RBP12.5□□□□□ -0.41
CLSTN3-209ENST00000539982 LMBRD2Q68DH5 695 aaPredicted RBP12.5□□□□□ -0.41
CLSTN3-209ENST00000539982 CCDC83Q8IWF9 413 aa12.5□□□□□ -0.41
CLSTN3-209ENST00000539982 FSIP1Q8NA03 581 aa12.5□□□□□ -0.41
CLSTN3-209ENST00000539982 WHAMMQ8TF30 809 aa12.5□□□□□ -0.41
CLSTN3-209ENST00000539982 SPACA7Q96KW9 195 aa12.5□□□□□ -0.41
CLSTN3-209ENST00000539982 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.5□□□□□ -0.41
CLSTN3-209ENST00000539982 PILRBQ9UKJ0 227 aa12.5□□□□□ -0.41
CLSTN3-209ENST00000539982 CIZ1Q9ULV3 898 aaPredicted RBP12.5□□□□□ -0.41
CLSTN3-209ENST00000539982 ARHGAP26Q9UNA1 814 aa12.5□□□□□ -0.41
CLSTN3-209ENST00000539982 LIMCH1Q9UPQ0 1083 aa12.5□□□□□ -0.41
CLSTN3-209ENST00000539982 C2orf78A6NCI8 922 aa12.49□□□□□ -0.41
CLSTN3-209ENST00000539982 MYMKA6NI61 221 aa12.49□□□□□ -0.41
CLSTN3-209ENST00000539982 ANKRD63C9JTQ0 380 aa12.49□□□□□ -0.41
CLSTN3-209ENST00000539982 TRAK2O60296 914 aa12.49□□□□□ -0.41
CLSTN3-209ENST00000539982 HNRNPLP14866 589 aaKnown RBP eCLIP12.49□□□□□ -0.41
CLSTN3-209ENST00000539982 ABCD1P33897 745 aa12.49□□□□□ -0.41
CLSTN3-209ENST00000539982 HOXD12P35452 270 aa12.49□□□□□ -0.41
CLSTN3-209ENST00000539982 PNPLA4P41247 253 aa12.49□□□□□ -0.41
CLSTN3-209ENST00000539982 ZNF131P52739 623 aa12.49□□□□□ -0.41
CLSTN3-209ENST00000539982 HMGN5P82970 282 aaKnown RBP12.49□□□□□ -0.41
CLSTN3-209ENST00000539982 GTF2BQ00403 316 aa12.49□□□□□ -0.41
CLSTN3-209ENST00000539982 KCNB1Q14721 858 aa12.49□□□□□ -0.41
CLSTN3-209ENST00000539982 GAB4Q2WGN9 574 aa12.49□□□□□ -0.41
CLSTN3-209ENST00000539982 HSF5Q4G112 596 aaPredicted RBP12.49□□□□□ -0.41
CLSTN3-209ENST00000539982 ZC2HC1CQ53FD0 456 aaPredicted RBP12.49□□□□□ -0.41
CLSTN3-209ENST00000539982 PEAR1Q5VY43 1037 aaPredicted RBP12.49□□□□□ -0.41
CLSTN3-209ENST00000539982 ADALQ6DHV7 355 aa12.49□□□□□ -0.41
CLSTN3-209ENST00000539982 SLFN12LQ6IEE8 588 aa12.49□□□□□ -0.41
CLSTN3-209ENST00000539982 ARMCX6Q7L4S7 300 aa12.49□□□□□ -0.41
CLSTN3-209ENST00000539982 PROSER1Q86XN7 944 aa12.49□□□□□ -0.41
CLSTN3-209ENST00000539982 ADGRG2Q8IZP9 1017 aa12.49□□□□□ -0.41
CLSTN3-209ENST00000539982 PDCL2Q8N4E4 241 aa12.49□□□□□ -0.41
CLSTN3-209ENST00000539982 HDDC3Q8N4P3 179 aa12.49□□□□□ -0.41
CLSTN3-209ENST00000539982 CHCHD4Q8N4Q1 142 aa12.49□□□□□ -0.41
CLSTN3-209ENST00000539982 FRMD1Q8N878 549 aa12.49□□□□□ -0.41
CLSTN3-209ENST00000539982 FAM184AQ8NB25 1140 aa12.49□□□□□ -0.41
CLSTN3-209ENST00000539982 CEP76Q8TAP6 659 aa12.49□□□□□ -0.41
CLSTN3-209ENST00000539982 CDK5RAP3Q96JB5 506 aa12.49□□□□□ -0.41
CLSTN3-209ENST00000539982 ZNF560Q96MR9 790 aa12.49□□□□□ -0.41
CLSTN3-209ENST00000539982 REEP2Q9BRK0 252 aa12.49□□□□□ -0.41
CLSTN3-209ENST00000539982 PARVGQ9HBI0 331 aa12.49□□□□□ -0.41
CLSTN3-209ENST00000539982 POLMQ9NP87 494 aaPredicted RBP12.49□□□□□ -0.41
CLSTN3-209ENST00000539982 DDX43Q9NXZ2 648 aaKnown RBP12.49□□□□□ -0.41
CLSTN3-209ENST00000539982 MBD1Q9UIS9 605 aaPredicted RBP12.49□□□□□ -0.41
CLSTN3-209ENST00000539982 GTF3C4Q9UKN8 822 aa12.49□□□□□ -0.41
CLSTN3-209ENST00000539982 SLC6A14Q9UN76 642 aa12.49□□□□□ -0.41
CLSTN3-209ENST00000539982 STYXL1Q9Y6J8 313 aa12.49□□□□□ -0.41
CLSTN3-209ENST00000539982 CACNA1EQ15878 2313 aa12.49□□□□□ -0.41
CLSTN3-209ENST00000539982 PTPRDP23468 1912 aa12.49□□□□□ -0.41
CLSTN3-209ENST00000539982 TCHHQ07283 1943 aa12.49□□□□□ -0.41
CLSTN3-209ENST00000539982 GON4LQ3T8J9 2241 aa12.48□□□□□ -0.41
CLSTN3-209ENST00000539982 A0A0A0MRY4 1105 aa12.48□□□□□ -0.41
CLSTN3-209ENST00000539982 SGK1O00141 431 aa12.48□□□□□ -0.41
CLSTN3-209ENST00000539982 FAM13AO94988 1023 aa12.48□□□□□ -0.41
CLSTN3-209ENST00000539982 PFKLP17858 780 aa12.48□□□□□ -0.41
CLSTN3-209ENST00000539982 PDE6CP51160 858 aa12.48□□□□□ -0.41
CLSTN3-209ENST00000539982 ATXN3P54252 364 aaPredicted RBP12.48□□□□□ -0.41
CLSTN3-209ENST00000539982 ZXDBP98169 803 aa12.48□□□□□ -0.41
CLSTN3-209ENST00000539982 MYL7Q01449 175 aa12.48□□□□□ -0.41
CLSTN3-209ENST00000539982 HNRNPDQ14103 355 aaKnown RBP12.48□□□□□ -0.41
CLSTN3-209ENST00000539982 DUOXA1Q1HG43 343 aa12.48□□□□□ -0.41
CLSTN3-209ENST00000539982 ZNF423Q2M1K9 1284 aa12.48□□□□□ -0.41
CLSTN3-209ENST00000539982 MAP7D1Q3KQU3 841 aa12.48□□□□□ -0.41
CLSTN3-209ENST00000539982 CFAP221Q4G0U5 840 aa12.48□□□□□ -0.41
CLSTN3-209ENST00000539982 TMEM119Q4V9L6 283 aa12.48□□□□□ -0.41
CLSTN3-209ENST00000539982 INTS6LQ5JSJ4 861 aaKnown RBP12.48□□□□□ -0.41
CLSTN3-209ENST00000539982 LYSMD4Q5XG99 296 aa12.48□□□□□ -0.41
CLSTN3-209ENST00000539982 NT5DC4Q86YG4 428 aa12.48□□□□□ -0.41
CLSTN3-209ENST00000539982 TMEM86AQ8N2M4 240 aa12.48□□□□□ -0.41
CLSTN3-209ENST00000539982 ALLCQ8N6M5 410 aa12.48□□□□□ -0.41
CLSTN3-209ENST00000539982 KIAA1958Q8N8K9 716 aa12.48□□□□□ -0.41
CLSTN3-209ENST00000539982 IL17RCQ8NAC3 791 aa12.48□□□□□ -0.41
CLSTN3-209ENST00000539982 TXNDC5Q8NBS9 432 aaKnown RBP12.48□□□□□ -0.41
CLSTN3-209ENST00000539982 PNKPQ96T60 521 aa12.48□□□□□ -0.41
CLSTN3-209ENST00000539982 PKMYT1Q99640 499 aa12.48□□□□□ -0.41
CLSTN3-209ENST00000539982 BCCIPQ9P287 314 aaKnown RBP eCLIP12.48□□□□□ -0.41
CLSTN3-209ENST00000539982 AGO2Q9UKV8 859 aaKnown RBP12.48□□□□□ -0.41
CLSTN3-209ENST00000539982 GPSM3Q9Y4H4 160 aa12.48□□□□□ -0.41
CLSTN3-209ENST00000539982 PI4KAP42356 2102 aa12.47□□□□□ -0.41
CLSTN3-209ENST00000539982 TNRC6BQ9UPQ9 1833 aaKnown RBP12.47□□□□□ -0.41
CLSTN3-209ENST00000539982 LEFTY2O00292 366 aa12.47□□□□□ -0.41
CLSTN3-209ENST00000539982 OPHN1O60890 802 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms