RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 ANKRD6Q9Y2G4 727 aa4.48□□□□□ -1.69
VPS13A-213ENST00000539950 OFD1O75665 1012 aa4.47□□□□□ -1.69
VPS13A-213ENST00000539950 ABLIM3O94929 683 aa4.47□□□□□ -1.69
VPS13A-213ENST00000539950 PDE8BO95263 885 aa4.47□□□□□ -1.69
VPS13A-213ENST00000539950 TUBB4AP04350 444 aa4.47□□□□□ -1.69
VPS13A-213ENST00000539950 VCAM1P19320 739 aa4.47□□□□□ -1.69
VPS13A-213ENST00000539950 CTGFP29279 349 aa4.47□□□□□ -1.69
VPS13A-213ENST00000539950 RAB1AP62820 205 aa4.47□□□□□ -1.69
VPS13A-213ENST00000539950 MYO1EQ12965 1108 aa4.47□□□□□ -1.69
VPS13A-213ENST00000539950 IFIT1BQ5T764 474 aaKnown RBP4.47□□□□□ -1.69
VPS13A-213ENST00000539950 TRIM72Q6ZMU5 477 aa4.47□□□□□ -1.69
VPS13A-213ENST00000539950 CATSPERGQ6ZRH7 1159 aa4.47□□□□□ -1.69
VPS13A-213ENST00000539950 BHLHA9Q7RTU4 235 aa4.47□□□□□ -1.69
VPS13A-213ENST00000539950 RITA1Q96K30 269 aa4.47□□□□□ -1.69
VPS13A-213ENST00000539950 LENG8Q96PV6 779 aaPredicted RBP4.47□□□□□ -1.69
VPS13A-213ENST00000539950 CAMKK2Q96RR4 588 aa4.47□□□□□ -1.69
VPS13A-213ENST00000539950 MESP1Q9BRJ9 268 aa4.47□□□□□ -1.69
VPS13A-213ENST00000539950 PDGFCQ9NRA1 345 aa4.47□□□□□ -1.69
VPS13A-213ENST00000539950 CCNL1Q9UK58 526 aaPredicted RBP4.47□□□□□ -1.69
VPS13A-213ENST00000539950 SHOC2Q9UQ13 582 aa4.47□□□□□ -1.69
VPS13A-213ENST00000539950 TMX2Q9Y320 296 aa4.47□□□□□ -1.69
VPS13A-213ENST00000539950 SMIM35A0A1B0GVV1 85 aa4.46□□□□□ -1.7
VPS13A-213ENST00000539950 MOSPD3O75425 235 aa4.46□□□□□ -1.7
VPS13A-213ENST00000539950 TJP3O95049 919 aa4.46□□□□□ -1.7
VPS13A-213ENST00000539950 VNN1O95497 513 aa4.46□□□□□ -1.7
VPS13A-213ENST00000539950 IBSPP21815 317 aaPredicted RBP4.46□□□□□ -1.7
VPS13A-213ENST00000539950 ARHGAP25P42331 645 aa4.46□□□□□ -1.7
VPS13A-213ENST00000539950 GPSM2P81274 684 aa4.46□□□□□ -1.7
VPS13A-213ENST00000539950 FGL2Q14314 439 aa4.46□□□□□ -1.7
VPS13A-213ENST00000539950 LY6KQ17RY6 165 aa4.46□□□□□ -1.7
VPS13A-213ENST00000539950 FCRL6Q6DN72 434 aa4.46□□□□□ -1.7
VPS13A-213ENST00000539950 KIRREL2Q6UWL6 708 aa4.46□□□□□ -1.7
VPS13A-213ENST00000539950 SLC15A3Q8IY34 581 aa4.46□□□□□ -1.7
VPS13A-213ENST00000539950 DNAJC5GQ8N7S2 189 aa4.46□□□□□ -1.7
VPS13A-213ENST00000539950 DIS3LQ8TF46 1054 aaKnown RBP4.46□□□□□ -1.7
VPS13A-213ENST00000539950 SOCS4Q8WXH5 440 aa4.46□□□□□ -1.7
VPS13A-213ENST00000539950 ZBTB9Q96C00 473 aa4.46□□□□□ -1.7
VPS13A-213ENST00000539950 C5orf34Q96MH7 638 aa4.46□□□□□ -1.7
VPS13A-213ENST00000539950 NT5C1BQ96P26 610 aa4.46□□□□□ -1.7
VPS13A-213ENST00000539950 ASB2Q96Q27 587 aa4.46□□□□□ -1.7
VPS13A-213ENST00000539950 THAP7Q9BT49 309 aaPredicted RBP4.46□□□□□ -1.7
VPS13A-213ENST00000539950 RHOBTB2Q9BYZ6 727 aa4.46□□□□□ -1.7
VPS13A-213ENST00000539950 GABRQQ9UN88 632 aa4.46□□□□□ -1.7
VPS13A-213ENST00000539950 ZNF521Q96K83 1311 aa4.46□□□□□ -1.7
VPS13A-213ENST00000539950 FER1L4A9Z1Z3 1794 aa4.45□□□□□ -1.7
VPS13A-213ENST00000539950 A0A088AWK7 358 aa4.45□□□□□ -1.7
VPS13A-213ENST00000539950 PROB1E7EW31 1015 aa4.45□□□□□ -1.7
VPS13A-213ENST00000539950 AP1G1O43747 822 aa4.45□□□□□ -1.7
VPS13A-213ENST00000539950 EXOC3O60645 756 aa4.45□□□□□ -1.7
VPS13A-213ENST00000539950 TOP3BO95985 862 aaKnown RBP4.45□□□□□ -1.7
VPS13A-213ENST00000539950 NPR1P16066 1061 aa4.45□□□□□ -1.7
VPS13A-213ENST00000539950 NCLP19338 710 aaKnown RBP4.45□□□□□ -1.7
VPS13A-213ENST00000539950 LRPAP1P30533 357 aa4.45□□□□□ -1.7
VPS13A-213ENST00000539950 PTGER1P34995 402 aa4.45□□□□□ -1.7
VPS13A-213ENST00000539950 PDE6CP51160 858 aa4.45□□□□□ -1.7
VPS13A-213ENST00000539950 TPTEP56180 551 aa4.45□□□□□ -1.7
VPS13A-213ENST00000539950 L1TD1Q5T7N2 865 aaKnown RBP4.45□□□□□ -1.7
VPS13A-213ENST00000539950 SLC9A4Q6AI14 798 aa4.45□□□□□ -1.7
VPS13A-213ENST00000539950 GALNT16Q8N428 558 aa4.45□□□□□ -1.7
VPS13A-213ENST00000539950 SLC15A4Q8N697 577 aa4.45□□□□□ -1.7
VPS13A-213ENST00000539950 C8orf58Q8NAV2 365 aa4.45□□□□□ -1.7
VPS13A-213ENST00000539950 DENND1AQ8TEH3 1009 aa4.45□□□□□ -1.7
VPS13A-213ENST00000539950 OSCP1Q8WVF1 389 aa4.45□□□□□ -1.7
VPS13A-213ENST00000539950 DAZAP1Q96EP5 407 aaKnown RBP4.45□□□□□ -1.7
VPS13A-213ENST00000539950 FCRL4Q96PJ5 515 aa4.45□□□□□ -1.7
VPS13A-213ENST00000539950 PUS7Q96PZ0 661 aaKnown RBP4.45□□□□□ -1.7
VPS13A-213ENST00000539950 PRSS22Q9GZN4 317 aa4.45□□□□□ -1.7
VPS13A-213ENST00000539950 SPRTNQ9H040 489 aaPredicted RBP4.45□□□□□ -1.7
VPS13A-213ENST00000539950 CNNM1Q9NRU3 951 aa4.45□□□□□ -1.7
VPS13A-213ENST00000539950 PIH1D1Q9NWS0 290 aaKnown RBP4.45□□□□□ -1.7
VPS13A-213ENST00000539950 GABBR1Q9UBS5 961 aa4.45□□□□□ -1.7
VPS13A-213ENST00000539950 NOP58Q9Y2X3 529 aaKnown RBP4.45□□□□□ -1.7
VPS13A-213ENST00000539950 SNX14Q9Y5W7 946 aa4.45□□□□□ -1.7
VPS13A-213ENST00000539950 ANKRD62A6NC57 917 aa4.44□□□□□ -1.7
VPS13A-213ENST00000539950 KCNU1A8MYU2 1149 aa4.44□□□□□ -1.7
VPS13A-213ENST00000539950 H7C1Q1 480 aa4.44□□□□□ -1.7
VPS13A-213ENST00000539950 MYO1CO00159 1063 aa4.44□□□□□ -1.7
VPS13A-213ENST00000539950 IGKV2-30P06310 120 aa4.44□□□□□ -1.7
VPS13A-213ENST00000539950 THP07101 528 aa4.44□□□□□ -1.7
VPS13A-213ENST00000539950 KCNA3P22001 575 aa4.44□□□□□ -1.7
VPS13A-213ENST00000539950 FPR3P25089 353 aa4.44□□□□□ -1.7
VPS13A-213ENST00000539950 HTR1BP28222 390 aa4.44□□□□□ -1.7
VPS13A-213ENST00000539950 DGKEP52429 567 aa4.44□□□□□ -1.7
VPS13A-213ENST00000539950 ARFIP2P53365 341 aa4.44□□□□□ -1.7
VPS13A-213ENST00000539950 WNT3P56703 355 aa4.44□□□□□ -1.7
VPS13A-213ENST00000539950 KRT17Q04695 432 aa4.44□□□□□ -1.7
VPS13A-213ENST00000539950 DAZAP2Q15038 168 aaPredicted RBP4.44□□□□□ -1.7
VPS13A-213ENST00000539950 CYP1B1Q16678 543 aa4.44□□□□□ -1.7
VPS13A-213ENST00000539950 TBC1D25Q3MII6 688 aa4.44□□□□□ -1.7
VPS13A-213ENST00000539950 DPY19L3Q6ZPD9 716 aa4.44□□□□□ -1.7
VPS13A-213ENST00000539950 CAND1Q86VP6 1230 aaKnown RBP4.44□□□□□ -1.7
VPS13A-213ENST00000539950 COL23A1Q86Y22 540 aaPredicted RBP4.44□□□□□ -1.7
VPS13A-213ENST00000539950 DENND1CQ8IV53 801 aa4.44□□□□□ -1.7
VPS13A-213ENST00000539950 ABRAQ8N0Z2 381 aa4.44□□□□□ -1.7
VPS13A-213ENST00000539950 TERB1Q8NA31 727 aa4.44□□□□□ -1.7
VPS13A-213ENST00000539950 ABHD11Q8NFV4 315 aa4.44□□□□□ -1.7
VPS13A-213ENST00000539950 PPP1R35Q8TAP8 253 aa4.44□□□□□ -1.7
VPS13A-213ENST00000539950 TBC1D30Q9Y2I9 924 aa4.44□□□□□ -1.7
VPS13A-213ENST00000539950 A0A087WWL8 130 aa4.43□□□□□ -1.7
VPS13A-213ENST00000539950 POC1B-GALNT4F8VUJ3 575 aa4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms