RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 ZNF268Q14587 947 aaPredicted RBP12.33□□□□□ -0.44
RTN3-209ENST00000538995 MDH1BQ5I0G3 518 aa12.33□□□□□ -0.44
RTN3-209ENST00000538995 SDHAF4Q5VUM1 108 aa12.33□□□□□ -0.44
RTN3-209ENST00000538995 SV2AQ7L0J3 742 aa12.33□□□□□ -0.44
RTN3-209ENST00000538995 ALYREFQ86V81 257 aaKnown RBP12.33□□□□□ -0.44
RTN3-209ENST00000538995 MON1AQ86VX9 555 aa12.33□□□□□ -0.44
RTN3-209ENST00000538995 C1orf210Q8IVY1 113 aa12.33□□□□□ -0.44
RTN3-209ENST00000538995 SCN4BQ8IWT1 228 aa12.33□□□□□ -0.44
RTN3-209ENST00000538995 FAM186BQ8IYM0 893 aa12.33□□□□□ -0.44
RTN3-209ENST00000538995 B3GALNT2Q8NCR0 500 aa12.33□□□□□ -0.44
RTN3-209ENST00000538995 BPIFB1Q8TDL5 484 aa12.33□□□□□ -0.44
RTN3-209ENST00000538995 CLDN23Q96B33 292 aa12.33□□□□□ -0.44
RTN3-209ENST00000538995 TNIP3Q96KP6 325 aa12.33□□□□□ -0.44
RTN3-209ENST00000538995 C8orf48Q96LL4 319 aa12.33□□□□□ -0.44
RTN3-209ENST00000538995 IER2Q9BTL4 223 aa12.33□□□□□ -0.44
RTN3-209ENST00000538995 SLC46A2Q9BY10 475 aa12.33□□□□□ -0.44
RTN3-209ENST00000538995 IMPG2Q9BZV3 1241 aa12.33□□□□□ -0.44
RTN3-209ENST00000538995 SMYD3Q9H7B4 428 aa12.33□□□□□ -0.44
RTN3-209ENST00000538995 C8orf33Q9H7E9 229 aaPredicted RBP12.33□□□□□ -0.44
RTN3-209ENST00000538995 MAGED2Q9UNF1 606 aaPredicted RBP12.33□□□□□ -0.44
RTN3-209ENST00000538995 MAPK8IP1Q9UQF2 711 aa12.33□□□□□ -0.44
RTN3-209ENST00000538995 PIAS3Q9Y6X2 628 aa12.33□□□□□ -0.44
RTN3-209ENST00000538995 ATP8B3O60423 1300 aa12.33□□□□□ -0.44
RTN3-209ENST00000538995 COL4A2P08572 1712 aa12.32□□□□□ -0.44
RTN3-209ENST00000538995 SHISA7A6NL88 538 aa12.32□□□□□ -0.44
RTN3-209ENST00000538995 ASS1P00966 412 aaKnown RBP12.32□□□□□ -0.44
RTN3-209ENST00000538995 PFKLP17858 780 aa12.32□□□□□ -0.44
RTN3-209ENST00000538995 BDNFP23560 247 aa12.32□□□□□ -0.44
RTN3-209ENST00000538995 GTF2H1P32780 548 aa12.32□□□□□ -0.44
RTN3-209ENST00000538995 GRIK1P39086 918 aa12.32□□□□□ -0.44
RTN3-209ENST00000538995 PIK3CAP42336 1068 aa12.32□□□□□ -0.44
RTN3-209ENST00000538995 PDE6CP51160 858 aa12.32□□□□□ -0.44
RTN3-209ENST00000538995 NOP14P78316 857 aaKnown RBP12.32□□□□□ -0.44
RTN3-209ENST00000538995 C1orf220Q5T0J3 134 aa12.32□□□□□ -0.44
RTN3-209ENST00000538995 ZNF658Q5TYW1 1059 aaPredicted RBP12.32□□□□□ -0.44
RTN3-209ENST00000538995 DENND5BQ6ZUT9 1274 aa12.32□□□□□ -0.44
RTN3-209ENST00000538995 CSGALNACT1Q8TDX6 532 aa12.32□□□□□ -0.44
RTN3-209ENST00000538995 SMARCE1Q969G3 411 aa12.32□□□□□ -0.44
RTN3-209ENST00000538995 TTLL2Q9BWV7 592 aa12.32□□□□□ -0.44
RTN3-209ENST00000538995 FAM86C1Q9NVL1 165 aa12.32□□□□□ -0.44
RTN3-209ENST00000538995 THG1LQ9NWX6 298 aaKnown RBP12.32□□□□□ -0.44
RTN3-209ENST00000538995 NME7Q9Y5B8 376 aa12.32□□□□□ -0.44
RTN3-209ENST00000538995 NUP210Q8TEM1 1887 aaPredicted RBP12.31□□□□□ -0.44
RTN3-209ENST00000538995 ZFHX2Q9C0A1 2572 aaPredicted RBP12.31□□□□□ -0.44
RTN3-209ENST00000538995 MYO15AQ9UKN7 3530 aa12.31□□□□□ -0.44
RTN3-209ENST00000538995 CETN3O15182 167 aa12.31□□□□□ -0.44
RTN3-209ENST00000538995 SLC16A3O15427 465 aaKnown RBP12.31□□□□□ -0.44
RTN3-209ENST00000538995 STX10O60499 249 aa12.31□□□□□ -0.44
RTN3-209ENST00000538995 KINO60870 393 aaKnown RBP12.31□□□□□ -0.44
RTN3-209ENST00000538995 CLSTN1O94985 981 aa12.31□□□□□ -0.44
RTN3-209ENST00000538995 HLA-DRAP01903 254 aa12.31□□□□□ -0.44
RTN3-209ENST00000538995 EPB41P11171 864 aaKnown RBP12.31□□□□□ -0.44
RTN3-209ENST00000538995 TRIM21P19474 475 aaKnown RBP12.31□□□□□ -0.44
RTN3-209ENST00000538995 CD72P21854 359 aa12.31□□□□□ -0.44
RTN3-209ENST00000538995 PPP1R2P41236 205 aa12.31□□□□□ -0.44
RTN3-209ENST00000538995 PPP3CCP48454 512 aa12.31□□□□□ -0.44
RTN3-209ENST00000538995 TXNDC8Q6A555 127 aa12.31□□□□□ -0.44
RTN3-209ENST00000538995 SCARA5Q6ZMJ2 495 aa12.31□□□□□ -0.44
RTN3-209ENST00000538995 UNC93AQ86WB7 457 aa12.31□□□□□ -0.44
RTN3-209ENST00000538995 ZC3H3Q8IXZ2 948 aaKnown RBP12.31□□□□□ -0.44
RTN3-209ENST00000538995 SMYD4Q8IYR2 804 aaPredicted RBP12.31□□□□□ -0.44
RTN3-209ENST00000538995 ZNF687Q8N1G0 1237 aa12.31□□□□□ -0.44
RTN3-209ENST00000538995 MAB21L3Q8N8X9 362 aa12.31□□□□□ -0.44
RTN3-209ENST00000538995 STKLD1Q8NE28 680 aa12.31□□□□□ -0.44
RTN3-209ENST00000538995 FAM3CQ92520 227 aa12.31□□□□□ -0.44
RTN3-209ENST00000538995 USP13Q92995 863 aaPredicted RBP12.31□□□□□ -0.44
RTN3-209ENST00000538995 FAXDC2Q96IV6 333 aa12.31□□□□□ -0.44
RTN3-209ENST00000538995 LRRC3BQ96PB8 259 aa12.31□□□□□ -0.44
RTN3-209ENST00000538995 PHOX2BQ99453 314 aa12.31□□□□□ -0.44
RTN3-209ENST00000538995 TSG101Q99816 390 aa12.31□□□□□ -0.44
RTN3-209ENST00000538995 DPEP3Q9H4B8 488 aa12.31□□□□□ -0.44
RTN3-209ENST00000538995 TMEM8AQ9HCN3 771 aa12.31□□□□□ -0.44
RTN3-209ENST00000538995 TDP1Q9NUW8 608 aa12.31□□□□□ -0.44
RTN3-209ENST00000538995 MTF2Q9Y483 593 aaPredicted RBP12.31□□□□□ -0.44
RTN3-209ENST00000538995 PCDHA5Q9Y5H7 936 aa12.31□□□□□ -0.44
RTN3-209ENST00000538995 TRAV19A0A0A6YYK7 116 aa12.3□□□□□ -0.44
RTN3-209ENST00000538995 F8VP50 259 aa12.3□□□□□ -0.44
RTN3-209ENST00000538995 LRRN2O75325 713 aa12.3□□□□□ -0.44
RTN3-209ENST00000538995 USP17L7P0C7H9 530 aa12.3□□□□□ -0.44
RTN3-209ENST00000538995 TRIM49P0CI25 452 aa12.3□□□□□ -0.44
RTN3-209ENST00000538995 TRIM49CP0CI26 452 aa12.3□□□□□ -0.44
RTN3-209ENST00000538995 TCF3P15923 654 aa12.3□□□□□ -0.44
RTN3-209ENST00000538995 PRCPP42785 496 aa12.3□□□□□ -0.44
RTN3-209ENST00000538995 ASPAP45381 313 aa12.3□□□□□ -0.44
RTN3-209ENST00000538995 GCLMP48507 274 aa12.3□□□□□ -0.44
RTN3-209ENST00000538995 CDH8P55286 799 aa12.3□□□□□ -0.44
RTN3-209ENST00000538995 LRRC63Q05C16 580 aa12.3□□□□□ -0.44
RTN3-209ENST00000538995 PPP3CAQ08209 521 aa12.3□□□□□ -0.44
RTN3-209ENST00000538995 INCA1Q0VD86 236 aa12.3□□□□□ -0.44
RTN3-209ENST00000538995 ZNF528Q3MIS6 628 aa12.3□□□□□ -0.44
RTN3-209ENST00000538995 ZC3H14Q6PJT7 736 aaKnown RBP12.3□□□□□ -0.44
RTN3-209ENST00000538995 MAMSTRQ6ZN01 415 aa12.3□□□□□ -0.44
RTN3-209ENST00000538995 FAM35AQ86V20 835 aa12.3□□□□□ -0.44
RTN3-209ENST00000538995 RALGPS2Q86X27 583 aaPredicted RBP12.3□□□□□ -0.44
RTN3-209ENST00000538995 CCDC150Q8NCX0 1101 aa12.3□□□□□ -0.44
RTN3-209ENST00000538995 B3GNT5Q9BYG0 378 aa12.3□□□□□ -0.44
RTN3-209ENST00000538995 ZNF518BQ9C0D4 1074 aa12.3□□□□□ -0.44
RTN3-209ENST00000538995 NIF3L1Q9GZT8 377 aa12.3□□□□□ -0.44
RTN3-209ENST00000538995 SDCBP2Q9H190 292 aa12.3□□□□□ -0.44
RTN3-209ENST00000538995 CHRDQ9H2X0 955 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms