RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 ATF6P18850 670 aa7.03□□□□□ -1.28
CD44-237ENST00000534082 LIG1P18858 919 aa7.03□□□□□ -1.28
CD44-237ENST00000534082 MARCKSP29966 332 aaPredicted RBP7.03□□□□□ -1.28
CD44-237ENST00000534082 NMT1P30419 496 aaKnown RBP7.03□□□□□ -1.28
CD44-237ENST00000534082 WDR4P57081 412 aaKnown RBP7.03□□□□□ -1.28
CD44-237ENST00000534082 MRPS21P82921 87 aaKnown RBP7.03□□□□□ -1.28
CD44-237ENST00000534082 TLE3Q04726 772 aa7.03□□□□□ -1.28
CD44-237ENST00000534082 GPR17Q13304 367 aa7.03□□□□□ -1.28
CD44-237ENST00000534082 VEPH1Q14D04 833 aa7.03□□□□□ -1.28
CD44-237ENST00000534082 EPHA7Q15375 998 aa7.03□□□□□ -1.28
CD44-237ENST00000534082 CCDC157Q569K6 752 aa7.03□□□□□ -1.28
CD44-237ENST00000534082 COLEC12Q5KU26 742 aa7.03□□□□□ -1.28
CD44-237ENST00000534082 NCAPH2Q6IBW4 605 aa7.03□□□□□ -1.28
CD44-237ENST00000534082 MOXD1Q6UVY6 613 aa7.03□□□□□ -1.28
CD44-237ENST00000534082 PRICKLE2Q7Z3G6 844 aa7.03□□□□□ -1.28
CD44-237ENST00000534082 CHD1LQ86WJ1 897 aa7.03□□□□□ -1.28
CD44-237ENST00000534082 SLC41A1Q8IVJ1 513 aa7.03□□□□□ -1.28
CD44-237ENST00000534082 MAB21L3Q8N8X9 362 aa7.03□□□□□ -1.28
CD44-237ENST00000534082 TRIML1Q8N9V2 468 aa7.03□□□□□ -1.28
CD44-237ENST00000534082 TXNDC5Q8NBS9 432 aaKnown RBP7.03□□□□□ -1.28
CD44-237ENST00000534082 TTC16Q8NEE8 873 aa7.03□□□□□ -1.28
CD44-237ENST00000534082 OSCP1Q8WVF1 389 aa7.03□□□□□ -1.28
CD44-237ENST00000534082 ZMAT2Q96NC0 199 aaKnown RBP7.03□□□□□ -1.28
CD44-237ENST00000534082 SEPT5Q99719 369 aaPredicted RBP7.03□□□□□ -1.28
CD44-237ENST00000534082 OXCT2Q9BYC2 517 aaPredicted RBP7.03□□□□□ -1.28
CD44-237ENST00000534082 TRIM4Q9C037 500 aa7.03□□□□□ -1.28
CD44-237ENST00000534082 C2orf40Q9H1Z8 148 aa7.03□□□□□ -1.28
CD44-237ENST00000534082 KDM4CQ9H3R0 1056 aa7.03□□□□□ -1.28
CD44-237ENST00000534082 FAM124BQ9H5Z6 455 aaPredicted RBP7.03□□□□□ -1.28
CD44-237ENST00000534082 IL21RQ9HBE5 538 aa7.03□□□□□ -1.28
CD44-237ENST00000534082 GPRC5CQ9NQ84 441 aa7.03□□□□□ -1.28
CD44-237ENST00000534082 TOPORSQ9NS56 1045 aaPredicted RBP7.03□□□□□ -1.28
CD44-237ENST00000534082 VPS54Q9P1Q0 977 aa7.03□□□□□ -1.28
CD44-237ENST00000534082 NXF1Q9UBU9 619 aaKnown RBP7.03□□□□□ -1.28
CD44-237ENST00000534082 SUSD2Q9UGT4 822 aa7.03□□□□□ -1.28
CD44-237ENST00000534082 TIMM13Q9Y5L4 95 aaPredicted RBP7.03□□□□□ -1.28
CD44-237ENST00000534082 DOPEY2Q9Y3R5 2298 aa7.03□□□□□ -1.28
CD44-237ENST00000534082 HELZP42694 1942 aaKnown RBP7.03□□□□□ -1.28
CD44-237ENST00000534082 LRRK2Q5S007 2527 aa7.02□□□□□ -1.29
CD44-237ENST00000534082 KLF18A0A0U1RQI7 1052 aa7.02□□□□□ -1.29
CD44-237ENST00000534082 OR6C75A6NL08 312 aa7.02□□□□□ -1.29
CD44-237ENST00000534082 ACKR2O00590 384 aa7.02□□□□□ -1.29
CD44-237ENST00000534082 SGSM2O43147 1006 aa7.02□□□□□ -1.29
CD44-237ENST00000534082 FLRT2O43155 660 aa7.02□□□□□ -1.29
CD44-237ENST00000534082 USO1O60763 962 aaKnown RBP7.02□□□□□ -1.29
CD44-237ENST00000534082 OAZ2O95190 189 aa7.02□□□□□ -1.29
CD44-237ENST00000534082 LARGE1O95461 756 aa7.02□□□□□ -1.29
CD44-237ENST00000534082 GNSP15586 552 aa7.02□□□□□ -1.29
CD44-237ENST00000534082 DDX6P26196 483 aaKnown RBP eCLIP7.02□□□□□ -1.29
CD44-237ENST00000534082 CHMLP26374 656 aa7.02□□□□□ -1.29
CD44-237ENST00000534082 RPL9P32969 192 aaKnown RBP7.02□□□□□ -1.29
CD44-237ENST00000534082 ADD1P35611 737 aaKnown RBP7.02□□□□□ -1.29
CD44-237ENST00000534082 OPRD1P41143 372 aa7.02□□□□□ -1.29
CD44-237ENST00000534082 YARSP54577 528 aaKnown RBP7.02□□□□□ -1.29
CD44-237ENST00000534082 RHDQ02161 417 aa7.02□□□□□ -1.29
CD44-237ENST00000534082 SCRN1Q12765 414 aa7.02□□□□□ -1.29
CD44-237ENST00000534082 USP4Q13107 963 aa7.02□□□□□ -1.29
CD44-237ENST00000534082 LY6DQ14210 128 aa7.02□□□□□ -1.29
CD44-237ENST00000534082 ZNF268Q14587 947 aaPredicted RBP7.02□□□□□ -1.29
CD44-237ENST00000534082 ZNF77Q15935 545 aa7.02□□□□□ -1.29
CD44-237ENST00000534082 TAF12Q16514 161 aa7.02□□□□□ -1.29
CD44-237ENST00000534082 EML3Q32P44 896 aa7.02□□□□□ -1.29
CD44-237ENST00000534082 HSF5Q4G112 596 aaPredicted RBP7.02□□□□□ -1.29
CD44-237ENST00000534082 PREPLQ4J6C6 727 aaPredicted RBP7.02□□□□□ -1.29
CD44-237ENST00000534082 XKR4Q5GH76 650 aa7.02□□□□□ -1.29
CD44-237ENST00000534082 EOGTQ5NDL2 527 aa7.02□□□□□ -1.29
CD44-237ENST00000534082 C6orf118Q5T5N4 469 aa7.02□□□□□ -1.29
CD44-237ENST00000534082 DHRS13Q6UX07 377 aa7.02□□□□□ -1.29
CD44-237ENST00000534082 MAEAQ7L5Y9 396 aa7.02□□□□□ -1.29
CD44-237ENST00000534082 TRIM46Q7Z4K8 759 aa7.02□□□□□ -1.29
CD44-237ENST00000534082 BPHLQ86WA6 291 aaPredicted RBP7.02□□□□□ -1.29
CD44-237ENST00000534082 SFTPA1Q8IWL2 248 aa7.02□□□□□ -1.29
CD44-237ENST00000534082 EFCAB13Q8IY85 973 aa7.02□□□□□ -1.29
CD44-237ENST00000534082 RGL4Q8IZJ4 473 aa7.02□□□□□ -1.29
CD44-237ENST00000534082 CEP120Q8N960 986 aa7.02□□□□□ -1.29
CD44-237ENST00000534082 IL17RCQ8NAC3 791 aa7.02□□□□□ -1.29
CD44-237ENST00000534082 ARMC2Q8NEN0 867 aa7.02□□□□□ -1.29
CD44-237ENST00000534082 C18orf25Q96B23 403 aaPredicted RBP7.02□□□□□ -1.29
CD44-237ENST00000534082 FAM20AQ96MK3 541 aa7.02□□□□□ -1.29
CD44-237ENST00000534082 C22orf23Q9BZE7 217 aa7.02□□□□□ -1.29
CD44-237ENST00000534082 CCDC113Q9H0I3 377 aa7.02□□□□□ -1.29
CD44-237ENST00000534082 KCNMB3Q9NPA1 279 aa7.02□□□□□ -1.29
CD44-237ENST00000534082 ZDHHC4Q9NPG8 344 aa7.02□□□□□ -1.29
CD44-237ENST00000534082 TM7SF3Q9NS93 570 aa7.02□□□□□ -1.29
CD44-237ENST00000534082 CALCOCO1Q9P1Z2 691 aa7.02□□□□□ -1.29
CD44-237ENST00000534082 BTBD3Q9Y2F9 522 aa7.02□□□□□ -1.29
CD44-237ENST00000534082 FNDC3AQ9Y2H6 1198 aaKnown RBP7.02□□□□□ -1.29
CD44-237ENST00000534082 BOD1L1Q8NFC6 3051 aa7.01□□□□□ -1.29
CD44-237ENST00000534082 NID2Q14112 1375 aa7.01□□□□□ -1.29
CD44-237ENST00000534082 IGHV1OR15-9A0A0B4J2B8 117 aa7.01□□□□□ -1.29
CD44-237ENST00000534082 M0QZQ0 153 aa7.01□□□□□ -1.29
CD44-237ENST00000534082 SLC27A2O14975 620 aa7.01□□□□□ -1.29
CD44-237ENST00000534082 ADAM23O75077 832 aa7.01□□□□□ -1.29
CD44-237ENST00000534082 CILPO75339 1184 aa7.01□□□□□ -1.29
CD44-237ENST00000534082 NFATC1O95644 943 aa7.01□□□□□ -1.29
CD44-237ENST00000534082 CER1O95813 267 aa7.01□□□□□ -1.29
CD44-237ENST00000534082 ADH1CP00326 375 aa7.01□□□□□ -1.29
CD44-237ENST00000534082 ZNF883P0CG24 379 aa7.01□□□□□ -1.29
CD44-237ENST00000534082 GSPT1P15170 499 aaKnown RBP7.01□□□□□ -1.29
CD44-237ENST00000534082 KCNE1P15382 129 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms