RNA–Protein interactions for RNA: ENST00000532550.1

PHRF1-204, Transcript of PHD and ring finger domains 1, humanhuman

TSL 3

Gene PHRF1, Length 748 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-204ENST00000532550 DENND4CQ5VZ89 1909 aa18.38■□□□□ 0.53
PHRF1-204ENST00000532550 NCANO14594 1321 aa18.38■□□□□ 0.53
PHRF1-204ENST00000532550 NUP210Q8TEM1 1887 aaPredicted RBP18.37■□□□□ 0.53
PHRF1-204ENST00000532550 TRIM66O15016 1216 aa18.37■□□□□ 0.53
PHRF1-204ENST00000532550 AKAP3O75969 853 aa18.37■□□□□ 0.53
PHRF1-204ENST00000532550 PRAMEF12O95522 483 aa18.37■□□□□ 0.53
PHRF1-204ENST00000532550 TARSP26639 723 aaKnown RBP18.37■□□□□ 0.53
PHRF1-204ENST00000532550 NBL1P41271 181 aa18.37■□□□□ 0.53
PHRF1-204ENST00000532550 KPNA1P52294 538 aaPredicted RBP18.37■□□□□ 0.53
PHRF1-204ENST00000532550 MLLT6P55198 1093 aaPredicted RBP18.37■□□□□ 0.53
PHRF1-204ENST00000532550 PLCB2Q00722 1185 aa18.37■□□□□ 0.53
PHRF1-204ENST00000532550 DENND5BQ6ZUT9 1274 aa18.37■□□□□ 0.53
PHRF1-204ENST00000532550 FAM186BQ8IYM0 893 aa18.37■□□□□ 0.53
PHRF1-204ENST00000532550 SMYD4Q8IYR2 804 aaPredicted RBP18.37■□□□□ 0.53
PHRF1-204ENST00000532550 TIGD1Q96MW7 591 aa18.37■□□□□ 0.53
PHRF1-204ENST00000532550 GSDMAQ96QA5 445 aa18.37■□□□□ 0.53
PHRF1-204ENST00000532550 DPEP3Q9H4B8 488 aa18.37■□□□□ 0.53
PHRF1-204ENST00000532550 SMYD3Q9H7B4 428 aa18.37■□□□□ 0.53
PHRF1-204ENST00000532550 C8orf33Q9H7E9 229 aaPredicted RBP18.37■□□□□ 0.53
PHRF1-204ENST00000532550 TDP1Q9NUW8 608 aa18.37■□□□□ 0.53
PHRF1-204ENST00000532550 SPATA6Q9NWH7 488 aaPredicted RBP18.37■□□□□ 0.53
PHRF1-204ENST00000532550 EHD2Q9NZN4 543 aa18.37■□□□□ 0.53
PHRF1-204ENST00000532550 NDRG2Q9UN36 371 aaKnown RBP18.37■□□□□ 0.53
PHRF1-204ENST00000532550 NME7Q9Y5B8 376 aa18.37■□□□□ 0.53
PHRF1-204ENST00000532550 TICRRQ7Z2Z1 1910 aa18.37■□□□□ 0.53
PHRF1-204ENST00000532550 ARNTLO00327 626 aa18.36■□□□□ 0.53
PHRF1-204ENST00000532550 COL4A3Q01955 1670 aa18.36■□□□□ 0.53
PHRF1-204ENST00000532550 EDRF1Q3B7T1 1238 aa18.36■□□□□ 0.53
PHRF1-204ENST00000532550 ZNF658Q5TYW1 1059 aaPredicted RBP18.36■□□□□ 0.53
PHRF1-204ENST00000532550 C1orf228Q6PIY5 440 aa18.36■□□□□ 0.53
PHRF1-204ENST00000532550 B3GALNT2Q8NCR0 500 aa18.36■□□□□ 0.53
PHRF1-204ENST00000532550 SMARCE1Q969G3 411 aa18.36■□□□□ 0.53
PHRF1-204ENST00000532550 CLDN23Q96B33 292 aa18.36■□□□□ 0.53
PHRF1-204ENST00000532550 ELMO3Q96BJ8 720 aa18.36■□□□□ 0.53
PHRF1-204ENST00000532550 ZFYVE19Q96K21 471 aa18.36■□□□□ 0.53
PHRF1-204ENST00000532550 TNIP3Q96KP6 325 aa18.36■□□□□ 0.53
PHRF1-204ENST00000532550 C8orf48Q96LL4 319 aa18.36■□□□□ 0.53
PHRF1-204ENST00000532550 ZFHX2Q9C0A1 2572 aaPredicted RBP18.36■□□□□ 0.53
PHRF1-204ENST00000532550 TRPC7Q9HCX4 862 aa18.36■□□□□ 0.53
PHRF1-204ENST00000532550 PROB1E7EW31 1015 aa18.35■□□□□ 0.53
PHRF1-204ENST00000532550 CETN3O15182 167 aa18.35■□□□□ 0.53
PHRF1-204ENST00000532550 LAMTOR5O43504 91 aa18.35■□□□□ 0.53
PHRF1-204ENST00000532550 HLA-DRAP01903 254 aa18.35■□□□□ 0.53
PHRF1-204ENST00000532550 CCNE1P24864 410 aa18.35■□□□□ 0.53
PHRF1-204ENST00000532550 PIK3CAP42336 1068 aa18.35■□□□□ 0.53
PHRF1-204ENST00000532550 PRCPP42785 496 aa18.35■□□□□ 0.53
PHRF1-204ENST00000532550 RPS9P46781 194 aaKnown RBP18.35■□□□□ 0.53
PHRF1-204ENST00000532550 RAP1GAPP47736 663 aa18.35■□□□□ 0.53
PHRF1-204ENST00000532550 GCLMP48507 274 aa18.35■□□□□ 0.53
PHRF1-204ENST00000532550 ENPEPQ07075 957 aa18.35■□□□□ 0.53
PHRF1-204ENST00000532550 C1orf220Q5T0J3 134 aa18.35■□□□□ 0.53
PHRF1-204ENST00000532550 SCARA5Q6ZMJ2 495 aa18.35■□□□□ 0.53
PHRF1-204ENST00000532550 FRMD5Q7Z6J6 570 aa18.35■□□□□ 0.53
PHRF1-204ENST00000532550 TTC8Q8TAM2 541 aa18.35■□□□□ 0.53
PHRF1-204ENST00000532550 USP13Q92995 863 aaPredicted RBP18.35■□□□□ 0.53
PHRF1-204ENST00000532550 MSANTD3Q96H12 275 aa18.35■□□□□ 0.53
PHRF1-204ENST00000532550 TSG101Q99816 390 aa18.35■□□□□ 0.53
PHRF1-204ENST00000532550 B3GNT5Q9BYG0 378 aa18.35■□□□□ 0.53
PHRF1-204ENST00000532550 GTPBP4Q9BZE4 634 aaKnown RBP18.35■□□□□ 0.53
PHRF1-204ENST00000532550 IMPG2Q9BZV3 1241 aa18.35■□□□□ 0.53
PHRF1-204ENST00000532550 ELOVL4Q9GZR5 314 aa18.35■□□□□ 0.53
PHRF1-204ENST00000532550 KIF9Q9HAQ2 790 aa18.35■□□□□ 0.53
PHRF1-204ENST00000532550 GKN1Q9NS71 199 aa18.35■□□□□ 0.53
PHRF1-204ENST00000532550 PCDHA5Q9Y5H7 936 aa18.35■□□□□ 0.53
PHRF1-204ENST00000532550 ATP8B3O60423 1300 aa18.34■□□□□ 0.53
PHRF1-204ENST00000532550 TRAV19A0A0A6YYK7 116 aa18.34■□□□□ 0.53
PHRF1-204ENST00000532550 SHISA7A6NL88 538 aa18.34■□□□□ 0.53
PHRF1-204ENST00000532550 F8VP50 259 aa18.34■□□□□ 0.53
PHRF1-204ENST00000532550 ASS1P00966 412 aaKnown RBP18.34■□□□□ 0.53
PHRF1-204ENST00000532550 USP17L7P0C7H9 530 aa18.34■□□□□ 0.53
PHRF1-204ENST00000532550 ZCWPW2Q504Y3 356 aa18.34■□□□□ 0.53
PHRF1-204ENST00000532550 CC2D1AQ6P1N0 951 aaPredicted RBP18.34■□□□□ 0.53
PHRF1-204ENST00000532550 CCDC150Q8NCX0 1101 aa18.34■□□□□ 0.53
PHRF1-204ENST00000532550 CYP2S1Q96SQ9 504 aa18.34■□□□□ 0.53
PHRF1-204ENST00000532550 MED10Q9BTT4 135 aa18.34■□□□□ 0.53
PHRF1-204ENST00000532550 MMRN2Q9H8L6 949 aa18.34■□□□□ 0.53
PHRF1-204ENST00000532550 LMAN1LQ9HAT1 526 aa18.34■□□□□ 0.53
PHRF1-204ENST00000532550 GTSE1Q9NYZ3 720 aa18.34■□□□□ 0.53
PHRF1-204ENST00000532550 TRPM5Q9NZQ8 1165 aa18.34■□□□□ 0.53
PHRF1-204ENST00000532550 CCL26Q9Y258 94 aa18.34■□□□□ 0.53
PHRF1-204ENST00000532550 PTPRZ1P23471 2315 aaPredicted RBP18.34■□□□□ 0.53
PHRF1-204ENST00000532550 PTPRDP23468 1912 aa18.33■□□□□ 0.53
PHRF1-204ENST00000532550 GREB1Q4ZG55 1949 aa18.33■□□□□ 0.53
PHRF1-204ENST00000532550 CLDN5O00501 218 aa18.33■□□□□ 0.52
PHRF1-204ENST00000532550 GFRA3O60609 400 aa18.33■□□□□ 0.52
PHRF1-204ENST00000532550 TADA3O75528 432 aa18.33■□□□□ 0.52
PHRF1-204ENST00000532550 CKMP06732 381 aa18.33■□□□□ 0.52
PHRF1-204ENST00000532550 SP9P0CG40 484 aa18.33■□□□□ 0.52
PHRF1-204ENST00000532550 TRIM49P0CI25 452 aa18.33■□□□□ 0.52
PHRF1-204ENST00000532550 TRIM49CP0CI26 452 aa18.33■□□□□ 0.52
PHRF1-204ENST00000532550 EPB41P11171 864 aaKnown RBP18.33■□□□□ 0.52
PHRF1-204ENST00000532550 HDCP19113 662 aa18.33■□□□□ 0.52
PHRF1-204ENST00000532550 TRIM21P19474 475 aaKnown RBP18.33■□□□□ 0.52
PHRF1-204ENST00000532550 PPP3CCP48454 512 aa18.33■□□□□ 0.52
PHRF1-204ENST00000532550 NOP14P78316 857 aaKnown RBP18.33■□□□□ 0.52
PHRF1-204ENST00000532550 PPP3CAQ08209 521 aa18.33■□□□□ 0.52
PHRF1-204ENST00000532550 FZD5Q13467 585 aa18.33■□□□□ 0.52
PHRF1-204ENST00000532550 ZNF268Q14587 947 aaPredicted RBP18.33■□□□□ 0.52
PHRF1-204ENST00000532550 SPOPLQ6IQ16 392 aa18.33■□□□□ 0.52
PHRF1-204ENST00000532550 ACOT1Q86TX2 421 aa18.33■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms