RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 C8orf48Q96LL4 319 aa21.98■■□□□ 1.11
VPS28-206ENST00000526734 SMYD3Q9H7B4 428 aa21.98■■□□□ 1.11
VPS28-206ENST00000526734 LTB4R2Q9NPC1 389 aa21.98■■□□□ 1.11
VPS28-206ENST00000526734 THG1LQ9NWX6 298 aaKnown RBP21.98■■□□□ 1.11
VPS28-206ENST00000526734 CHMP5Q9NZZ3 219 aa21.98■■□□□ 1.11
VPS28-206ENST00000526734 SLC16A3O15427 465 aaKnown RBP21.97■■□□□ 1.11
VPS28-206ENST00000526734 HLA-DRAP01903 254 aa21.97■■□□□ 1.11
VPS28-206ENST00000526734 PFKLP17858 780 aa21.97■■□□□ 1.11
VPS28-206ENST00000526734 BDNFP23560 247 aa21.97■■□□□ 1.11
VPS28-206ENST00000526734 GRIK1P39086 918 aa21.97■■□□□ 1.11
VPS28-206ENST00000526734 PDE6CP51160 858 aa21.97■■□□□ 1.11
VPS28-206ENST00000526734 FKBP3Q00688 224 aaKnown RBP21.97■■□□□ 1.11
VPS28-206ENST00000526734 SDHAF4Q5VUM1 108 aa21.97■■□□□ 1.11
VPS28-206ENST00000526734 UNC93AQ86WB7 457 aa21.97■■□□□ 1.11
VPS28-206ENST00000526734 BPIFB1Q8TDL5 484 aa21.97■■□□□ 1.11
VPS28-206ENST00000526734 FAXDC2Q96IV6 333 aa21.97■■□□□ 1.11
VPS28-206ENST00000526734 SLC46A2Q9BY10 475 aa21.97■■□□□ 1.11
VPS28-206ENST00000526734 DNAI2Q9GZS0 605 aa21.97■■□□□ 1.11
VPS28-206ENST00000526734 TMEM8AQ9HCN3 771 aa21.97■■□□□ 1.11
VPS28-206ENST00000526734 HEBP1Q9NRV9 189 aa21.97■■□□□ 1.11
VPS28-206ENST00000526734 PSMA7O14818 248 aa21.96■■□□□ 1.11
VPS28-206ENST00000526734 HOXD11P31277 338 aaPredicted RBP21.96■■□□□ 1.11
VPS28-206ENST00000526734 PPP3CCP48454 512 aa21.96■■□□□ 1.11
VPS28-206ENST00000526734 ZNF268Q14587 947 aaPredicted RBP21.96■■□□□ 1.11
VPS28-206ENST00000526734 UBXN2BQ14CS0 331 aa21.96■■□□□ 1.11
VPS28-206ENST00000526734 KRT39Q6A163 491 aa21.96■■□□□ 1.11
VPS28-206ENST00000526734 DENND5BQ6ZUT9 1274 aa21.96■■□□□ 1.11
VPS28-206ENST00000526734 ZC3H3Q8IXZ2 948 aaKnown RBP21.96■■□□□ 1.11
VPS28-206ENST00000526734 ADSSL1Q8N142 457 aa21.96■■□□□ 1.11
VPS28-206ENST00000526734 CSGALNACT1Q8TDX6 532 aa21.96■■□□□ 1.11
VPS28-206ENST00000526734 RSPRY1Q96DX4 576 aa21.96■■□□□ 1.11
VPS28-206ENST00000526734 BCO2Q9BYV7 579 aa21.96■■□□□ 1.11
VPS28-206ENST00000526734 FOXQ1Q9C009 403 aa21.96■■□□□ 1.11
VPS28-206ENST00000526734 CYP3A43Q9HB55 503 aa21.96■■□□□ 1.11
VPS28-206ENST00000526734 DLGAP2Q9P1A6 1054 aa21.96■■□□□ 1.11
VPS28-206ENST00000526734 NME7Q9Y5B8 376 aa21.96■■□□□ 1.11
VPS28-206ENST00000526734 NUP210Q8TEM1 1887 aaPredicted RBP21.96■■□□□ 1.11
VPS28-206ENST00000526734 ARNTLO00327 626 aa21.95■■□□□ 1.1
VPS28-206ENST00000526734 PRAMEF12O95522 483 aa21.95■■□□□ 1.1
VPS28-206ENST00000526734 TRIM49P0CI25 452 aa21.95■■□□□ 1.1
VPS28-206ENST00000526734 TRIM49CP0CI26 452 aa21.95■■□□□ 1.1
VPS28-206ENST00000526734 GCLMP48507 274 aa21.95■■□□□ 1.1
VPS28-206ENST00000526734 NOP14P78316 857 aaKnown RBP21.95■■□□□ 1.1
VPS28-206ENST00000526734 PPP3CAQ08209 521 aa21.95■■□□□ 1.1
VPS28-206ENST00000526734 SCARA5Q6ZMJ2 495 aa21.95■■□□□ 1.1
VPS28-206ENST00000526734 ATOH1Q92858 354 aaPredicted RBP21.95■■□□□ 1.1
VPS28-206ENST00000526734 TTLL2Q9BWV7 592 aa21.95■■□□□ 1.1
VPS28-206ENST00000526734 DPEP3Q9H4B8 488 aa21.95■■□□□ 1.1
VPS28-206ENST00000526734 C8orf33Q9H7E9 229 aaPredicted RBP21.95■■□□□ 1.1
VPS28-206ENST00000526734 NCANO14594 1321 aa21.95■■□□□ 1.1
VPS28-206ENST00000526734 CACNA1HO95180 2353 aa21.95■■□□□ 1.1
VPS28-206ENST00000526734 FAM170BA6NMN3 283 aa21.94■■□□□ 1.1
VPS28-206ENST00000526734 ANP32AP39687 249 aaKnown RBP21.94■■□□□ 1.1
VPS28-206ENST00000526734 ASPAP45381 313 aa21.94■■□□□ 1.1
VPS28-206ENST00000526734 RPS9P46781 194 aaKnown RBP21.94■■□□□ 1.1
VPS28-206ENST00000526734 CDH8P55286 799 aa21.94■■□□□ 1.1
VPS28-206ENST00000526734 FOXR2Q6PJQ5 311 aa21.94■■□□□ 1.1
VPS28-206ENST00000526734 TTC39CQ8N584 583 aa21.94■■□□□ 1.1
VPS28-206ENST00000526734 MAB21L3Q8N8X9 362 aa21.94■■□□□ 1.1
VPS28-206ENST00000526734 DHTKD1Q96HY7 919 aaPredicted RBP21.94■■□□□ 1.1
VPS28-206ENST00000526734 IER2Q9BTL4 223 aa21.94■■□□□ 1.1
VPS28-206ENST00000526734 NIF3L1Q9GZT8 377 aa21.94■■□□□ 1.1
VPS28-206ENST00000526734 FAM124BQ9H5Z6 455 aaPredicted RBP21.94■■□□□ 1.1
VPS28-206ENST00000526734 TDP1Q9NUW8 608 aa21.94■■□□□ 1.1
VPS28-206ENST00000526734 PIAS3Q9Y6X2 628 aa21.94■■□□□ 1.1
VPS28-206ENST00000526734 TRAV19A0A0A6YYK7 116 aa21.93■■□□□ 1.1
VPS28-206ENST00000526734 F8VP50 259 aa21.93■■□□□ 1.1
VPS28-206ENST00000526734 H0Y858 1186 aa21.93■■□□□ 1.1
VPS28-206ENST00000526734 TADA3O75528 432 aa21.93■■□□□ 1.1
VPS28-206ENST00000526734 DCNP07585 359 aaKnown RBP21.93■■□□□ 1.1
VPS28-206ENST00000526734 CCNE1P24864 410 aa21.93■■□□□ 1.1
VPS28-206ENST00000526734 RAP1GAPP47736 663 aa21.93■■□□□ 1.1
VPS28-206ENST00000526734 MXI1P50539 228 aa21.93■■□□□ 1.1
VPS28-206ENST00000526734 INCA1Q0VD86 236 aa21.93■■□□□ 1.1
VPS28-206ENST00000526734 ANGPT1Q15389 498 aa21.93■■□□□ 1.1
VPS28-206ENST00000526734 TXNDC8Q6A555 127 aa21.93■■□□□ 1.1
VPS28-206ENST00000526734 CRYBG2Q8N1P7 616 aa21.93■■□□□ 1.1
VPS28-206ENST00000526734 TAS1R2Q8TE23 839 aa21.93■■□□□ 1.1
VPS28-206ENST00000526734 CLDN23Q96B33 292 aa21.93■■□□□ 1.1
VPS28-206ENST00000526734 SMARCD1Q96GM5 515 aa21.93■■□□□ 1.1
VPS28-206ENST00000526734 B3GNT5Q9BYG0 378 aa21.93■■□□□ 1.1
VPS28-206ENST00000526734 ZNF518BQ9C0D4 1074 aa21.93■■□□□ 1.1
VPS28-206ENST00000526734 SDCBP2Q9H190 292 aa21.93■■□□□ 1.1
VPS28-206ENST00000526734 TRPM5Q9NZQ8 1165 aa21.93■■□□□ 1.1
VPS28-206ENST00000526734 RTN3O95197 1032 aaPredicted RBP21.92■■□□□ 1.1
VPS28-206ENST00000526734 USP17L7P0C7H9 530 aa21.92■■□□□ 1.1
VPS28-206ENST00000526734 UBE2HP62256 183 aa21.92■■□□□ 1.1
VPS28-206ENST00000526734 ANKRD40Q6AI12 368 aa21.92■■□□□ 1.1
VPS28-206ENST00000526734 FAM35AQ86V20 835 aa21.92■■□□□ 1.1
VPS28-206ENST00000526734 STKLD1Q8NE28 680 aa21.92■■□□□ 1.1
VPS28-206ENST00000526734 FBXL13Q8NEE6 735 aa21.92■■□□□ 1.1
VPS28-206ENST00000526734 FAM3CQ92520 227 aa21.92■■□□□ 1.1
VPS28-206ENST00000526734 METTL14Q9HCE5 456 aaKnown RBP21.92■■□□□ 1.1
VPS28-206ENST00000526734 DMAP1Q9NPF5 467 aaPredicted RBP21.92■■□□□ 1.1
VPS28-206ENST00000526734 MAN1B1Q9UKM7 699 aa21.92■■□□□ 1.1
VPS28-206ENST00000526734 PIEZO1Q92508 2521 aa21.92■■□□□ 1.1
VPS28-206ENST00000526734 COL4A2P08572 1712 aa21.92■■□□□ 1.1
VPS28-206ENST00000526734 TARSP26639 723 aaKnown RBP21.91■■□□□ 1.1
VPS28-206ENST00000526734 KPNA1P52294 538 aaPredicted RBP21.91■■□□□ 1.1
VPS28-206ENST00000526734 NDST1P52848 882 aa21.91■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms