RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 OR56A3Q8NH54 315 aa5.01□□□□□ -1.61
CD44-217ENST00000525348 RAPGEF4Q8WZA2 1011 aa5.01□□□□□ -1.61
CD44-217ENST00000525348 DPF1Q92782 380 aa5.01□□□□□ -1.61
CD44-217ENST00000525348 MOGAT1Q96PD6 335 aa5.01□□□□□ -1.61
CD44-217ENST00000525348 MS4A7Q9GZW8 240 aaPredicted RBP5.01□□□□□ -1.61
CD44-217ENST00000525348 KLHL42Q9P2K6 505 aa5.01□□□□□ -1.61
CD44-217ENST00000525348 CPNE7Q9UBL6 633 aa5.01□□□□□ -1.61
CD44-217ENST00000525348 CGB1A6NKQ9 187 aa5□□□□□ -1.61
CD44-217ENST00000525348 VSTM5A8MXK1 200 aa5□□□□□ -1.61
CD44-217ENST00000525348 TLR5O60602 858 aa5□□□□□ -1.61
CD44-217ENST00000525348 NXPH3O95157 252 aa5□□□□□ -1.61
CD44-217ENST00000525348 HNRNPCP07910 306 aaKnown RBP eCLIP5□□□□□ -1.61
CD44-217ENST00000525348 DGKEP52429 567 aa5□□□□□ -1.61
CD44-217ENST00000525348 SUMO3P55854 103 aaPredicted RBP5□□□□□ -1.61
CD44-217ENST00000525348 TFF2Q03403 129 aa5□□□□□ -1.61
CD44-217ENST00000525348 E2F2Q14209 437 aa5□□□□□ -1.61
CD44-217ENST00000525348 PLA1AQ53H76 456 aa5□□□□□ -1.61
CD44-217ENST00000525348 PLAC9Q5JTB6 97 aa5□□□□□ -1.61
CD44-217ENST00000525348 TEDDM1Q5T9Z0 273 aa5□□□□□ -1.61
CD44-217ENST00000525348 C14orf80Q86SX3 495 aa5□□□□□ -1.61
CD44-217ENST00000525348 MICU3Q86XE3 530 aa5□□□□□ -1.61
CD44-217ENST00000525348 MYO1HQ8N1T3 1032 aa5□□□□□ -1.61
CD44-217ENST00000525348 R3HDM4Q96D70 268 aa5□□□□□ -1.61
CD44-217ENST00000525348 REPS1Q96D71 796 aa5□□□□□ -1.61
CD44-217ENST00000525348 BHMT2Q9H2M3 363 aa5□□□□□ -1.61
CD44-217ENST00000525348 ADARB2Q9NS39 739 aaKnown RBP5□□□□□ -1.61
CD44-217ENST00000525348 TCEAL9Q9UHQ7 104 aa5□□□□□ -1.61
CD44-217ENST00000525348 SNX14Q9Y5W7 946 aa5□□□□□ -1.61
CD44-217ENST00000525348 WNT6Q9Y6F9 365 aa5□□□□□ -1.61
CD44-217ENST00000525348 A1L4Q6 167 aa4.99□□□□□ -1.61
CD44-217ENST00000525348 CFAP69A5D8W1 941 aa4.99□□□□□ -1.61
CD44-217ENST00000525348 MANSC4A6NHS7 340 aaPredicted RBP4.99□□□□□ -1.61
CD44-217ENST00000525348 MYO1CO00159 1063 aa4.99□□□□□ -1.61
CD44-217ENST00000525348 TBC1D4O60343 1298 aa4.99□□□□□ -1.61
CD44-217ENST00000525348 VNN1O95497 513 aa4.99□□□□□ -1.61
CD44-217ENST00000525348 NHLRC4P0CG21 123 aaPredicted RBP4.99□□□□□ -1.61
CD44-217ENST00000525348 CYP2C9P11712 490 aa4.99□□□□□ -1.61
CD44-217ENST00000525348 LRPAP1P30533 357 aa4.99□□□□□ -1.61
CD44-217ENST00000525348 SOX10P56693 466 aa4.99□□□□□ -1.61
CD44-217ENST00000525348 KRT17Q04695 432 aa4.99□□□□□ -1.61
CD44-217ENST00000525348 FOXF2Q12947 444 aa4.99□□□□□ -1.61
CD44-217ENST00000525348 LY6KQ17RY6 165 aa4.99□□□□□ -1.61
CD44-217ENST00000525348 PTCHD3Q3KNS1 767 aa4.99□□□□□ -1.61
CD44-217ENST00000525348 FAM153CQ494X1 144 aa4.99□□□□□ -1.61
CD44-217ENST00000525348 DEPDC1Q5TB30 811 aa4.99□□□□□ -1.61
CD44-217ENST00000525348 CYB5RLQ6IPT4 315 aa4.99□□□□□ -1.61
CD44-217ENST00000525348 SLC15A3Q8IY34 581 aa4.99□□□□□ -1.61
CD44-217ENST00000525348 MPP5Q8N3R9 675 aa4.99□□□□□ -1.61
CD44-217ENST00000525348 FAM156AQ8NDB6 213 aa4.99□□□□□ -1.61
CD44-217ENST00000525348 TTC8Q8TAM2 541 aa4.99□□□□□ -1.61
CD44-217ENST00000525348 BPIFB1Q8TDL5 484 aa4.99□□□□□ -1.61
CD44-217ENST00000525348 MACROD1Q9BQ69 325 aa4.99□□□□□ -1.61
CD44-217ENST00000525348 GLOD4Q9HC38 313 aa4.99□□□□□ -1.61
CD44-217ENST00000525348 TRIM43BA6NCK2 446 aa4.98□□□□□ -1.61
CD44-217ENST00000525348 TPP1O14773 563 aa4.98□□□□□ -1.61
CD44-217ENST00000525348 FRS3O43559 492 aa4.98□□□□□ -1.61
CD44-217ENST00000525348 NDUFB7P17568 137 aa4.98□□□□□ -1.61
CD44-217ENST00000525348 ENGP17813 658 aa4.98□□□□□ -1.61
CD44-217ENST00000525348 CYP2C18P33260 490 aa4.98□□□□□ -1.61
CD44-217ENST00000525348 ALDH9A1P49189 494 aa4.98□□□□□ -1.61
CD44-217ENST00000525348 PDE6CP51160 858 aa4.98□□□□□ -1.61
CD44-217ENST00000525348 GBX1Q14549 363 aa4.98□□□□□ -1.61
CD44-217ENST00000525348 C3orf38Q5JPI3 329 aa4.98□□□□□ -1.61
CD44-217ENST00000525348 FCRLBQ6BAA4 426 aa4.98□□□□□ -1.61
CD44-217ENST00000525348 ANKRD16Q6P6B7 361 aa4.98□□□□□ -1.61
CD44-217ENST00000525348 CHST15Q7LFX5 561 aaPredicted RBP4.98□□□□□ -1.61
CD44-217ENST00000525348 ABRAQ8N0Z2 381 aa4.98□□□□□ -1.61
CD44-217ENST00000525348 TMEM171Q8WVE6 324 aa4.98□□□□□ -1.61
CD44-217ENST00000525348 SOCS4Q8WXH5 440 aa4.98□□□□□ -1.61
CD44-217ENST00000525348 TRIM43Q96BQ3 446 aaPredicted RBP4.98□□□□□ -1.61
CD44-217ENST00000525348 DUSP22Q9NRW4 184 aa4.98□□□□□ -1.61
CD44-217ENST00000525348 SACM1LQ9NTJ5 587 aa4.98□□□□□ -1.61
CD44-217ENST00000525348 PADI4Q9UM07 663 aa4.98□□□□□ -1.61
CD44-217ENST00000525348 SH2B3Q9UQQ2 575 aa4.98□□□□□ -1.61
CD44-217ENST00000525348 FNDC1Q4ZHG4 1894 aaPredicted RBP4.98□□□□□ -1.61
CD44-217ENST00000525348 FER1L4A9Z1Z3 1794 aa4.97□□□□□ -1.61
CD44-217ENST00000525348 TARM1B6A8C7 271 aa4.97□□□□□ -1.61
CD44-217ENST00000525348 FAM163BP0C2L3 166 aa4.97□□□□□ -1.61
CD44-217ENST00000525348 XRCC6P12956 609 aaKnown RBP eCLIP4.97□□□□□ -1.61
CD44-217ENST00000525348 CYP4F2P78329 520 aa4.97□□□□□ -1.61
CD44-217ENST00000525348 RAB32Q13637 225 aa4.97□□□□□ -1.61
CD44-217ENST00000525348 MGAT5BQ3V5L5 792 aa4.97□□□□□ -1.61
CD44-217ENST00000525348 AARS2Q5JTZ9 985 aaKnown RBP4.97□□□□□ -1.61
CD44-217ENST00000525348 RNF220Q5VTB9 566 aa4.97□□□□□ -1.61
CD44-217ENST00000525348 KRTAP5-3Q6L8H2 238 aa4.97□□□□□ -1.61
CD44-217ENST00000525348 ZNF782Q6ZMW2 699 aaPredicted RBP4.97□□□□□ -1.61
CD44-217ENST00000525348 DPY19L3Q6ZPD9 716 aa4.97□□□□□ -1.61
CD44-217ENST00000525348 KCTD20Q7Z5Y7 419 aa4.97□□□□□ -1.61
CD44-217ENST00000525348 HASPINQ8TF76 798 aa4.97□□□□□ -1.61
CD44-217ENST00000525348 OSCP1Q8WVF1 389 aa4.97□□□□□ -1.61
CD44-217ENST00000525348 ZNF518BQ9C0D4 1074 aa4.97□□□□□ -1.61
CD44-217ENST00000525348 FAM204AQ9H8W3 233 aa4.97□□□□□ -1.61
CD44-217ENST00000525348 OBP2AQ9NY56 170 aa4.97□□□□□ -1.61
CD44-217ENST00000525348 COL20A1Q9P218 1284 aa4.97□□□□□ -1.61
CD44-217ENST00000525348 ONECUT2O95948 504 aa4.96□□□□□ -1.62
CD44-217ENST00000525348 ZBED1O96006 694 aa4.96□□□□□ -1.62
CD44-217ENST00000525348 HRGP04196 525 aa4.96□□□□□ -1.62
CD44-217ENST00000525348 IL1R1P14778 569 aa4.96□□□□□ -1.62
CD44-217ENST00000525348 BRAFP15056 766 aa4.96□□□□□ -1.62
CD44-217ENST00000525348 CTGFP29279 349 aa4.96□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms