RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 MAP2K6P52564 334 aa8.29□□□□□ -1.08
SDCBP-208ENST00000520228 ZNF280AP59817 542 aaPredicted RBP8.29□□□□□ -1.08
SDCBP-208ENST00000520228 MTX1Q13505 466 aa8.29□□□□□ -1.08
SDCBP-208ENST00000520228 DACT2Q5SW24 774 aa8.29□□□□□ -1.08
SDCBP-208ENST00000520228 ERICH6BQ5W0A0 696 aa8.29□□□□□ -1.08
SDCBP-208ENST00000520228 DRICH1Q6PGQ1 229 aaPredicted RBP8.29□□□□□ -1.08
SDCBP-208ENST00000520228 USP50Q70EL3 339 aaPredicted RBP8.29□□□□□ -1.08
SDCBP-208ENST00000520228 ZNF804AQ7Z570 1209 aa8.29□□□□□ -1.08
SDCBP-208ENST00000520228 KRTAP1-3Q8IUG1 177 aa8.29□□□□□ -1.08
SDCBP-208ENST00000520228 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.29□□□□□ -1.08
SDCBP-208ENST00000520228 KRTAP3-1Q9BYR8 98 aa8.29□□□□□ -1.08
SDCBP-208ENST00000520228 CD209Q9NNX6 404 aa8.29□□□□□ -1.08
SDCBP-208ENST00000520228 PA2G4Q9UQ80 394 aaKnown RBP8.29□□□□□ -1.08
SDCBP-208ENST00000520228 LAMB2P55268 1798 aa8.29□□□□□ -1.08
SDCBP-208ENST00000520228 CACNA1FO60840 1977 aa8.28□□□□□ -1.08
SDCBP-208ENST00000520228 GOLGA6CA6NDK9 693 aa8.28□□□□□ -1.08
SDCBP-208ENST00000520228 GOLGA6BA6NDN3 693 aa8.28□□□□□ -1.08
SDCBP-208ENST00000520228 LRRC14BA6NHZ5 514 aa8.28□□□□□ -1.08
SDCBP-208ENST00000520228 H3BML4 177 aa8.28□□□□□ -1.08
SDCBP-208ENST00000520228 ERC2O15083 957 aa8.28□□□□□ -1.08
SDCBP-208ENST00000520228 GOLGA6DP0CG33 693 aa8.28□□□□□ -1.08
SDCBP-208ENST00000520228 HIBADHP31937 336 aaKnown RBP8.28□□□□□ -1.08
SDCBP-208ENST00000520228 IL15P40933 162 aaPredicted RBP8.28□□□□□ -1.08
SDCBP-208ENST00000520228 GYG1P46976 350 aa8.28□□□□□ -1.08
SDCBP-208ENST00000520228 HK3P52790 923 aa8.28□□□□□ -1.08
SDCBP-208ENST00000520228 CLRN1P58418 232 aa8.28□□□□□ -1.08
SDCBP-208ENST00000520228 HHEXQ03014 270 aa8.28□□□□□ -1.08
SDCBP-208ENST00000520228 PUM3Q15397 648 aaKnown RBP8.28□□□□□ -1.08
SDCBP-208ENST00000520228 KHDC1Q4VXA5 237 aaKnown RBP8.28□□□□□ -1.08
SDCBP-208ENST00000520228 CAVIN4Q5BKX8 364 aa8.28□□□□□ -1.08
SDCBP-208ENST00000520228 DCAF17Q5H9S7 520 aaPredicted RBP8.28□□□□□ -1.08
SDCBP-208ENST00000520228 THEMIS2Q5TEJ8 643 aa8.28□□□□□ -1.08
SDCBP-208ENST00000520228 STRIP1Q5VSL9 837 aa8.28□□□□□ -1.08
SDCBP-208ENST00000520228 NAIF1Q69YI7 327 aaPredicted RBP8.28□□□□□ -1.08
SDCBP-208ENST00000520228 TTLL5Q6EMB2 1281 aa8.28□□□□□ -1.08
SDCBP-208ENST00000520228 ATG9AQ7Z3C6 839 aa8.28□□□□□ -1.08
SDCBP-208ENST00000520228 SGMS1Q86VZ5 419 aa8.28□□□□□ -1.08
SDCBP-208ENST00000520228 VGLL2Q8N8G2 317 aa8.28□□□□□ -1.08
SDCBP-208ENST00000520228 C3orf20Q8ND61 904 aa8.28□□□□□ -1.08
SDCBP-208ENST00000520228 AGBL3Q8NEM8 1001 aa8.28□□□□□ -1.08
SDCBP-208ENST00000520228 RGMAQ96B86 450 aa8.28□□□□□ -1.08
SDCBP-208ENST00000520228 MYOCQ99972 504 aa8.28□□□□□ -1.08
SDCBP-208ENST00000520228 GOLGA6AQ9NYA3 693 aa8.28□□□□□ -1.08
SDCBP-208ENST00000520228 ARID1BQ8NFD5 2236 aaPredicted RBP8.27□□□□□ -1.08
SDCBP-208ENST00000520228 LRRC37AA6NMS7 1700 aa8.27□□□□□ -1.09
SDCBP-208ENST00000520228 PNMA6EA0A0J9YXQ4 647 aa8.27□□□□□ -1.09
SDCBP-208ENST00000520228 CAPN14A8MX76 684 aa8.27□□□□□ -1.09
SDCBP-208ENST00000520228 FTLP02792 175 aaPredicted RBP8.27□□□□□ -1.09
SDCBP-208ENST00000520228 IFIT1P09914 478 aaKnown RBP8.27□□□□□ -1.09
SDCBP-208ENST00000520228 RAP2AP10114 183 aa8.27□□□□□ -1.09
SDCBP-208ENST00000520228 SLC5A1P13866 664 aa8.27□□□□□ -1.09
SDCBP-208ENST00000520228 IL1R1P14778 569 aa8.27□□□□□ -1.09
SDCBP-208ENST00000520228 ATP5JP18859 108 aa8.27□□□□□ -1.09
SDCBP-208ENST00000520228 SELENOPP49908 381 aa8.27□□□□□ -1.09
SDCBP-208ENST00000520228 EFEMP1Q12805 493 aa8.27□□□□□ -1.09
SDCBP-208ENST00000520228 NOGQ13253 232 aa8.27□□□□□ -1.09
SDCBP-208ENST00000520228 SNAPC2Q13487 334 aa8.27□□□□□ -1.09
SDCBP-208ENST00000520228 MVPQ14764 893 aaKnown RBP8.27□□□□□ -1.09
SDCBP-208ENST00000520228 GFOD2Q3B7J2 385 aa8.27□□□□□ -1.09
SDCBP-208ENST00000520228 HS1BP3Q53T59 392 aa8.27□□□□□ -1.09
SDCBP-208ENST00000520228 CNTROBQ8N137 903 aa8.27□□□□□ -1.09
SDCBP-208ENST00000520228 LPIN2Q92539 896 aa8.27□□□□□ -1.09
SDCBP-208ENST00000520228 FAM84BQ96KN1 310 aaPredicted RBP8.27□□□□□ -1.09
SDCBP-208ENST00000520228 VRK1Q99986 396 aaPredicted RBP8.27□□□□□ -1.09
SDCBP-208ENST00000520228 MXD3Q9BW11 206 aa8.27□□□□□ -1.09
SDCBP-208ENST00000520228 CHMP4BQ9H444 224 aaKnown RBP8.27□□□□□ -1.09
SDCBP-208ENST00000520228 SMPD4Q9NXE4 827 aa8.27□□□□□ -1.09
SDCBP-208ENST00000520228 GABBR1Q9UBS5 961 aa8.27□□□□□ -1.09
SDCBP-208ENST00000520228 DDX19BQ9UMR2 479 aa8.27□□□□□ -1.09
SDCBP-208ENST00000520228 CLCA2Q9UQC9 943 aa8.27□□□□□ -1.09
SDCBP-208ENST00000520228 POLHQ9Y253 713 aa8.27□□□□□ -1.09
SDCBP-208ENST00000520228 SBF1O95248 1867 aa8.27□□□□□ -1.09
SDCBP-208ENST00000520228 WDR90Q96KV7 1748 aa8.26□□□□□ -1.09
SDCBP-208ENST00000520228 CACNA1SQ13698 1873 aa8.26□□□□□ -1.09
SDCBP-208ENST00000520228 NT5C1B-RDH14C9J2C7 533 aa8.26□□□□□ -1.09
SDCBP-208ENST00000520228 FRAT2O75474 233 aaPredicted RBP8.26□□□□□ -1.09
SDCBP-208ENST00000520228 MALP21145 153 aa8.26□□□□□ -1.09
SDCBP-208ENST00000520228 FGFR2P21802 821 aa8.26□□□□□ -1.09
SDCBP-208ENST00000520228 G3BP1Q13283 466 aaKnown RBP eCLIP8.26□□□□□ -1.09
SDCBP-208ENST00000520228 ATP2B3Q16720 1220 aa8.26□□□□□ -1.09
SDCBP-208ENST00000520228 C20orf194Q5TEA3 1177 aa8.26□□□□□ -1.09
SDCBP-208ENST00000520228 Q6ZRM9 215 aa8.26□□□□□ -1.09
SDCBP-208ENST00000520228 DENND1CQ8IV53 801 aa8.26□□□□□ -1.09
SDCBP-208ENST00000520228 MB21D1Q8N884 522 aa8.26□□□□□ -1.09
SDCBP-208ENST00000520228 ZBTB34Q8NCN2 500 aa8.26□□□□□ -1.09
SDCBP-208ENST00000520228 TDRD7Q8NHU6 1098 aaKnown RBP8.26□□□□□ -1.09
SDCBP-208ENST00000520228 ATXN2LQ8WWM7 1075 aaKnown RBP8.26□□□□□ -1.09
SDCBP-208ENST00000520228 C8orf49Q96NF6 230 aa8.26□□□□□ -1.09
SDCBP-208ENST00000520228 CGRRF1Q99675 332 aa8.26□□□□□ -1.09
SDCBP-208ENST00000520228 LRFN3Q9BTN0 628 aa8.26□□□□□ -1.09
SDCBP-208ENST00000520228 NDC1Q9BTX1 674 aa8.26□□□□□ -1.09
SDCBP-208ENST00000520228 C11orf54Q9H0W9 315 aaPredicted RBP8.26□□□□□ -1.09
SDCBP-208ENST00000520228 KMT5AQ9NQR1 393 aa8.26□□□□□ -1.09
SDCBP-208ENST00000520228 OBP2AQ9NY56 170 aa8.26□□□□□ -1.09
SDCBP-208ENST00000520228 RUVBL1Q9Y265 456 aaKnown RBP8.26□□□□□ -1.09
SDCBP-208ENST00000520228 MYO3BQ8WXR4 1341 aa8.26□□□□□ -1.09
SDCBP-208ENST00000520228 TIAM2Q8IVF5 1701 aa8.26□□□□□ -1.09
SDCBP-208ENST00000520228 TAF1P21675 1872 aa8.26□□□□□ -1.09
SDCBP-208ENST00000520228 KRTAP23-1A1A580 65 aa8.25□□□□□ -1.09
SDCBP-208ENST00000520228 VSTM5A8MXK1 200 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms