RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 SPATA17Q96L03 361 aa14.59□□□□□ -0.07
TCOF1-215ENST00000515516 FAM126AQ9BYI3 521 aaPredicted RBP14.59□□□□□ -0.07
TCOF1-215ENST00000515516 CRTAC1Q9NQ79 661 aa14.59□□□□□ -0.07
TCOF1-215ENST00000515516 ZDHHC9Q9Y397 364 aa14.59□□□□□ -0.07
TCOF1-215ENST00000515516 A0A1W2PQ27 194 aa14.58□□□□□ -0.08
TCOF1-215ENST00000515516 A0A1W2PQ64 194 aa14.58□□□□□ -0.08
TCOF1-215ENST00000515516 A0A1W2PQD8 194 aa14.58□□□□□ -0.08
TCOF1-215ENST00000515516 NR3C1P04150 777 aa14.58□□□□□ -0.08
TCOF1-215ENST00000515516 CKMP06732 381 aa14.58□□□□□ -0.08
TCOF1-215ENST00000515516 PTPN1P18031 435 aaKnown RBP14.58□□□□□ -0.08
TCOF1-215ENST00000515516 CTHP32929 405 aa14.58□□□□□ -0.08
TCOF1-215ENST00000515516 CXCL12P48061 93 aa14.58□□□□□ -0.08
TCOF1-215ENST00000515516 CASP4P49662 377 aa14.58□□□□□ -0.08
TCOF1-215ENST00000515516 TNK2Q07912 1038 aa14.58□□□□□ -0.08
TCOF1-215ENST00000515516 NCOA4Q13772 614 aa14.58□□□□□ -0.08
TCOF1-215ENST00000515516 ZNF268Q14587 947 aaPredicted RBP14.58□□□□□ -0.08
TCOF1-215ENST00000515516 KCNB1Q14721 858 aa14.58□□□□□ -0.08
TCOF1-215ENST00000515516 CCDC142Q17RM4 750 aa14.58□□□□□ -0.08
TCOF1-215ENST00000515516 ZNF667Q5HYK9 610 aa14.58□□□□□ -0.08
TCOF1-215ENST00000515516 TSSK4Q6SA08 328 aa14.58□□□□□ -0.08
TCOF1-215ENST00000515516 MAMSTRQ6ZN01 415 aa14.58□□□□□ -0.08
TCOF1-215ENST00000515516 DENND5BQ6ZUT9 1274 aa14.58□□□□□ -0.08
TCOF1-215ENST00000515516 PARD3BQ8TEW8 1205 aa14.58□□□□□ -0.08
TCOF1-215ENST00000515516 SECISBP2LQ93073 1101 aaKnown RBP14.58□□□□□ -0.08
TCOF1-215ENST00000515516 PCED1BQ96HM7 432 aa14.58□□□□□ -0.08
TCOF1-215ENST00000515516 KCTD10Q9H3F6 313 aa14.58□□□□□ -0.08
TCOF1-215ENST00000515516 PRMT8Q9NR22 394 aaPredicted RBP14.58□□□□□ -0.08
TCOF1-215ENST00000515516 DMAC2Q9NW81 257 aa14.58□□□□□ -0.08
TCOF1-215ENST00000515516 TRPM5Q9NZQ8 1165 aa14.58□□□□□ -0.08
TCOF1-215ENST00000515516 CCL26Q9Y258 94 aa14.58□□□□□ -0.08
TCOF1-215ENST00000515516 SCN1AP35498 2009 aa14.58□□□□□ -0.08
TCOF1-215ENST00000515516 FAM237AA0A1B0GTK4 181 aa14.57□□□□□ -0.08
TCOF1-215ENST00000515516 GOLGA6L4A6NEF3 574 aa14.57□□□□□ -0.08
TCOF1-215ENST00000515516 LRRIQ3A6PVS8 624 aaPredicted RBP14.57□□□□□ -0.08
TCOF1-215ENST00000515516 TRIM21P19474 475 aaKnown RBP14.57□□□□□ -0.08
TCOF1-215ENST00000515516 PPP3CCP48454 512 aa14.57□□□□□ -0.08
TCOF1-215ENST00000515516 FAM160A1Q05DH4 1040 aa14.57□□□□□ -0.08
TCOF1-215ENST00000515516 RUNX3Q13761 415 aa14.57□□□□□ -0.08
TCOF1-215ENST00000515516 PON2Q15165 354 aa14.57□□□□□ -0.08
TCOF1-215ENST00000515516 PDGFRLQ15198 375 aa14.57□□□□□ -0.08
TCOF1-215ENST00000515516 TDRD10Q5VZ19 366 aaKnown RBP14.57□□□□□ -0.08
TCOF1-215ENST00000515516 SYNPOQ8N3V7 929 aa14.57□□□□□ -0.08
TCOF1-215ENST00000515516 SPEM1Q8N4L4 309 aa14.57□□□□□ -0.08
TCOF1-215ENST00000515516 B3GALNT2Q8NCR0 500 aa14.57□□□□□ -0.08
TCOF1-215ENST00000515516 TMEM174Q8WUU8 243 aa14.57□□□□□ -0.08
TCOF1-215ENST00000515516 RUBCNQ92622 972 aa14.57□□□□□ -0.08
TCOF1-215ENST00000515516 CHAMP1Q96JM3 812 aa14.57□□□□□ -0.08
TCOF1-215ENST00000515516 C8orf48Q96LL4 319 aa14.57□□□□□ -0.08
TCOF1-215ENST00000515516 ELOVL4Q9GZR5 314 aa14.57□□□□□ -0.08
TCOF1-215ENST00000515516 XYLT2Q9H1B5 865 aa14.57□□□□□ -0.08
TCOF1-215ENST00000515516 EBF3Q9H4W6 596 aa14.57□□□□□ -0.08
TCOF1-215ENST00000515516 ATP8B3O60423 1300 aa14.57□□□□□ -0.08
TCOF1-215ENST00000515516 ANK1P16157 1881 aa14.57□□□□□ -0.08
TCOF1-215ENST00000515516 COL4A3Q01955 1670 aa14.56□□□□□ -0.08
TCOF1-215ENST00000515516 RHOBTB3O94955 611 aa14.56□□□□□ -0.08
TCOF1-215ENST00000515516 C4BPAP04003 597 aaKnown RBP14.56□□□□□ -0.08
TCOF1-215ENST00000515516 HDCP19113 662 aa14.56□□□□□ -0.08
TCOF1-215ENST00000515516 RPL13P26373 211 aaKnown RBP14.56□□□□□ -0.08
TCOF1-215ENST00000515516 CLDN10P78369 228 aa14.56□□□□□ -0.08
TCOF1-215ENST00000515516 GRSF1Q12849 480 aaKnown RBP eCLIP14.56□□□□□ -0.08
TCOF1-215ENST00000515516 MTF1Q14872 753 aa14.56□□□□□ -0.08
TCOF1-215ENST00000515516 SGSM1Q2NKQ1 1148 aa14.56□□□□□ -0.08
TCOF1-215ENST00000515516 TXNDC11Q6PKC3 985 aa14.56□□□□□ -0.08
TCOF1-215ENST00000515516 KRBA2Q6ZNG9 492 aa14.56□□□□□ -0.08
TCOF1-215ENST00000515516 ARL14EPQ8N8R7 260 aaPredicted RBP14.56□□□□□ -0.08
TCOF1-215ENST00000515516 ZBTB44Q8NCP5 570 aa14.56□□□□□ -0.08
TCOF1-215ENST00000515516 TMC2Q8TDI7 906 aa14.56□□□□□ -0.08
TCOF1-215ENST00000515516 TNIP3Q96KP6 325 aa14.56□□□□□ -0.08
TCOF1-215ENST00000515516 CYP2S1Q96SQ9 504 aa14.56□□□□□ -0.08
TCOF1-215ENST00000515516 FAM83CQ9BQN1 747 aa14.56□□□□□ -0.08
TCOF1-215ENST00000515516 MED10Q9BTT4 135 aa14.56□□□□□ -0.08
TCOF1-215ENST00000515516 GZF1Q9H116 711 aaPredicted RBP14.56□□□□□ -0.08
TCOF1-215ENST00000515516 VRTNQ9H8Y1 702 aa14.56□□□□□ -0.08
TCOF1-215ENST00000515516 DUS2Q9NX74 493 aaKnown RBP14.56□□□□□ -0.08
TCOF1-215ENST00000515516 TSC2P49815 1807 aa14.56□□□□□ -0.08
TCOF1-215ENST00000515516 F8VP50 259 aa14.55□□□□□ -0.08
TCOF1-215ENST00000515516 IKBKBO14920 756 aa14.55□□□□□ -0.08
TCOF1-215ENST00000515516 TADA3O75528 432 aa14.55□□□□□ -0.08
TCOF1-215ENST00000515516 ZNF202O95125 648 aa14.55□□□□□ -0.08
TCOF1-215ENST00000515516 ABL1P00519 1130 aa14.55□□□□□ -0.08
TCOF1-215ENST00000515516 PRR29P0C7W0 189 aa14.55□□□□□ -0.08
TCOF1-215ENST00000515516 KRT13P13646 458 aa14.55□□□□□ -0.08
TCOF1-215ENST00000515516 PFKLP17858 780 aa14.55□□□□□ -0.08
TCOF1-215ENST00000515516 IFNAR2P48551 515 aa14.55□□□□□ -0.08
TCOF1-215ENST00000515516 DPYDQ12882 1025 aa14.55□□□□□ -0.08
TCOF1-215ENST00000515516 NR1H3Q13133 447 aa14.55□□□□□ -0.08
TCOF1-215ENST00000515516 TRIM68Q6AZZ1 485 aa14.55□□□□□ -0.08
TCOF1-215ENST00000515516 SCARA5Q6ZMJ2 495 aa14.55□□□□□ -0.08
TCOF1-215ENST00000515516 CPA6Q8N4T0 437 aa14.55□□□□□ -0.08
TCOF1-215ENST00000515516 PLEKHO2Q8TD55 490 aa14.55□□□□□ -0.08
TCOF1-215ENST00000515516 TAF4BQ92750 862 aa14.55□□□□□ -0.08
TCOF1-215ENST00000515516 SLITRK1Q96PX8 696 aa14.55□□□□□ -0.08
TCOF1-215ENST00000515516 DPEP3Q9H4B8 488 aa14.55□□□□□ -0.08
TCOF1-215ENST00000515516 SMYD3Q9H7B4 428 aa14.55□□□□□ -0.08
TCOF1-215ENST00000515516 RBM12Q9NTZ6 932 aaKnown RBP14.55□□□□□ -0.08
TCOF1-215ENST00000515516 NCDNQ9UBB6 729 aa14.55□□□□□ -0.08
TCOF1-215ENST00000515516 RAB23Q9ULC3 237 aa14.55□□□□□ -0.08
TCOF1-215ENST00000515516 TRAF3IP3Q9Y228 551 aa14.55□□□□□ -0.08
TCOF1-215ENST00000515516 MAPK13O15264 365 aa14.54□□□□□ -0.08
TCOF1-215ENST00000515516 ARSAP15289 507 aa14.54□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms