RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 VPS4BO75351 444 aa11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 RCVRNP35243 200 aa11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 BTDP43251 543 aa11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 PHKA2P46019 1235 aa11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 CPA2P48052 419 aa11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 DDR1Q08345 913 aa11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 PDIA5Q14554 519 aa11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 NEK5Q6P3R8 708 aa11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 SDR42E1Q8WUS8 393 aa11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 EPB41L4BQ9H329 900 aa11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 NEK6Q9HC98 313 aa11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 TUBE1Q9UJT0 475 aa11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 JAG2Q9Y219 1238 aa11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 PKP3Q9Y446 797 aa11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 IQCJ-SCHIP1C9J366 451 aaPredicted RBP11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 ATG7O95352 703 aa11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 FLT3P36888 993 aa11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 PEX3P56589 373 aa11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 EXOSC10Q01780 885 aaKnown RBP11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 POU4F1Q01851 419 aa11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 NFYCQ13952 458 aa11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 NFIL3Q16649 462 aa11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 SYDE2Q5VT97 1194 aa11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 PDXDC2PQ6P474 469 aa11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 EDC3Q96F86 508 aaKnown RBP11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 ZNF560Q96MR9 790 aa11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 POLG2Q9UHN1 485 aa11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 WDR37Q9Y2I8 494 aa11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 SYNJ1O43426 1573 aa11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 MAPKBP1O60336 1514 aa11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 ERVV-2B6SEH9 535 aa11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 SNAP91O60641 907 aa11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 WFS1O76024 890 aa11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 PDHBP11177 359 aa11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 CYP19A1P11511 503 aaPredicted RBP11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 ATF6P18850 670 aa11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 CACNB1Q02641 598 aaPredicted RBP11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 PACS2Q86VP3 889 aa11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 DHFR2Q86XF0 187 aa11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 SLC22A9Q8IVM8 553 aa11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 TC2NQ8N9U0 490 aa11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 MYLPFQ96A32 169 aa11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 JMJD4Q9H9V9 463 aa11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 NCKIPSDQ9NZQ3 722 aa11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 CD274Q9NZQ7 290 aa11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 KCND2Q9NZV8 630 aa11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 ZNF624Q9P2J8 865 aaPredicted RBP11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 DMTF1Q9Y222 760 aa11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 ATXN2Q99700 1313 aaKnown RBP11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 SEC24AO95486 1093 aa11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 IFNGR2P38484 337 aa11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 RFC5P40937 340 aa11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 PAPD7Q5XG87 772 aaKnown RBP11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 KLHL24Q6TFL4 600 aa11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 OTUD5Q96G74 571 aa11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 PIGSQ96S52 555 aa11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 CHCHD6Q9BRQ6 235 aa11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 DCUN1D5Q9BTE7 237 aa11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 APEX2Q9UBZ4 518 aa11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 TPST1O60507 370 aa11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 PRLP01236 227 aa11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 CCDC166P0CW27 439 aa11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 PABPC1P11940 636 aaKnown RBP11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 ATP6V1C1P21283 382 aa11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 ADSSP30520 456 aa11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 SLC9A5Q14940 896 aa11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 ADSSL1Q8N142 457 aa11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 AP5M1Q9H0R1 490 aa11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 TFCP2L1Q9NZI6 479 aa11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 DDX20Q9UHI6 824 aaKnown RBP11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 DUSP12Q9UNI6 340 aa11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 DMRT2Q9Y5R5 561 aa11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 PLEKHG3A1L390 1219 aa11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 PIK3CDO00329 1044 aa11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 ZBTB39O15060 712 aa11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 SNAPC5O75971 98 aa11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 ATP6V1B2P21281 511 aa11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 SKIV2L2P42285 1042 aaKnown RBP11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 HNMTP50135 292 aa11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 TPI1P60174 286 aa11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 KCNMA1Q12791 1236 aa11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 MYBPC2Q14324 1141 aa11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 MAPK11Q15759 364 aa11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 CYP51A1Q16850 503 aa11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 CASP12Q6UXS9 341 aa11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 SCARA5Q6ZMJ2 495 aa11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 CACTIN-AS1Q8N1I8 211 aa11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 POC5Q8NA72 575 aa11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 ZNF507Q8TCN5 953 aa11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 RASGRP4Q8TDF6 673 aa11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 ACTRT1Q8TDG2 376 aa11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 CABLES1Q8TDN4 633 aa11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 UBP1Q9NZI7 540 aa11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 RAB21Q9UL25 225 aa11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 LRFN2Q9ULH4 789 aa11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 PRELID1Q9Y255 219 aa11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 SUPT3HB4E1H0 165 aa11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 MYL12BO14950 172 aa11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 DHFRP00374 187 aa11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 PRKAR1AP10644 381 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms