RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 AVPR1AP37288 418 aa17.4■□□□□ 0.38
SF3A1-209ENST00000496189 GPR15P49685 360 aa17.4■□□□□ 0.38
SF3A1-209ENST00000496189 INCA1Q0VD86 236 aa17.4■□□□□ 0.38
SF3A1-209ENST00000496189 NFKBIBQ15653 356 aa17.4■□□□□ 0.38
SF3A1-209ENST00000496189 CBWD6Q4V339 395 aa17.4■□□□□ 0.38
SF3A1-209ENST00000496189 CBWD3Q5JTY5 395 aa17.4■□□□□ 0.38
SF3A1-209ENST00000496189 FAM78AQ5JUQ0 283 aa17.4■□□□□ 0.38
SF3A1-209ENST00000496189 CBWD5Q5RIA9 395 aa17.4■□□□□ 0.38
SF3A1-209ENST00000496189 SDHAF4Q5VUM1 108 aa17.4■□□□□ 0.38
SF3A1-209ENST00000496189 GAREM2Q75VX8 874 aa17.4■□□□□ 0.38
SF3A1-209ENST00000496189 BMP8AQ7Z5Y6 402 aa17.4■□□□□ 0.38
SF3A1-209ENST00000496189 ENOX1Q8TC92 643 aaKnown RBP17.4■□□□□ 0.38
SF3A1-209ENST00000496189 DEPDC1BQ8WUY9 529 aa17.4■□□□□ 0.38
SF3A1-209ENST00000496189 SMARCD1Q96GM5 515 aa17.4■□□□□ 0.38
SF3A1-209ENST00000496189 C8orf48Q96LL4 319 aa17.4■□□□□ 0.38
SF3A1-209ENST00000496189 TASP1Q9H6P5 420 aa17.4■□□□□ 0.38
SF3A1-209ENST00000496189 APOBEC3GQ9HC16 384 aaKnown RBP17.4■□□□□ 0.38
SF3A1-209ENST00000496189 WNT16Q9UBV4 365 aa17.4■□□□□ 0.38
SF3A1-209ENST00000496189 COQ4Q9Y3A0 265 aa17.4■□□□□ 0.38
SF3A1-209ENST00000496189 HCN4Q9Y3Q4 1203 aa17.4■□□□□ 0.38
SF3A1-209ENST00000496189 DOCK6Q96HP0 2047 aa17.39■□□□□ 0.37
SF3A1-209ENST00000496189 SOBPA7XYQ1 873 aa17.39■□□□□ 0.37
SF3A1-209ENST00000496189 F8VP50 259 aa17.39■□□□□ 0.37
SF3A1-209ENST00000496189 STK25O00506 426 aa17.39■□□□□ 0.37
SF3A1-209ENST00000496189 PMM2O15305 246 aa17.39■□□□□ 0.37
SF3A1-209ENST00000496189 NOL4O94818 638 aa17.39■□□□□ 0.37
SF3A1-209ENST00000496189 AFPP02771 609 aaKnown RBP17.39■□□□□ 0.37
SF3A1-209ENST00000496189 PDE6CP51160 858 aa17.39■□□□□ 0.37
SF3A1-209ENST00000496189 CYP4F8P98187 520 aa17.39■□□□□ 0.37
SF3A1-209ENST00000496189 CCDC142Q17RM4 750 aa17.39■□□□□ 0.37
SF3A1-209ENST00000496189 FAM35AQ86V20 835 aa17.39■□□□□ 0.37
SF3A1-209ENST00000496189 TRIM59Q8IWR1 403 aa17.39■□□□□ 0.37
SF3A1-209ENST00000496189 CRYBG2Q8N1P7 616 aa17.39■□□□□ 0.37
SF3A1-209ENST00000496189 SEMA4DQ92854 862 aa17.39■□□□□ 0.37
SF3A1-209ENST00000496189 CNOT6LQ96LI5 555 aaKnown RBP17.39■□□□□ 0.37
SF3A1-209ENST00000496189 NT5C1BQ96P26 610 aa17.39■□□□□ 0.37
SF3A1-209ENST00000496189 B3GNT5Q9BYG0 378 aa17.39■□□□□ 0.37
SF3A1-209ENST00000496189 SDCBP2Q9H190 292 aa17.39■□□□□ 0.37
SF3A1-209ENST00000496189 DMAP1Q9NPF5 467 aaPredicted RBP17.39■□□□□ 0.37
SF3A1-209ENST00000496189 SLC2A4RGQ9NR83 387 aa17.39■□□□□ 0.37
SF3A1-209ENST00000496189 NOTCH4Q99466 2003 aa17.38■□□□□ 0.37
SF3A1-209ENST00000496189 MYO10Q9HD67 2058 aa17.38■□□□□ 0.37
SF3A1-209ENST00000496189 NARSO43776 548 aaKnown RBP17.38■□□□□ 0.37
SF3A1-209ENST00000496189 CILPO75339 1184 aa17.38■□□□□ 0.37
SF3A1-209ENST00000496189 MOSPD3O75425 235 aa17.38■□□□□ 0.37
SF3A1-209ENST00000496189 AP1G2O75843 785 aa17.38■□□□□ 0.37
SF3A1-209ENST00000496189 RTN3O95197 1032 aaPredicted RBP17.38■□□□□ 0.37
SF3A1-209ENST00000496189 HMGA1P17096 107 aaKnown RBP17.38■□□□□ 0.37
SF3A1-209ENST00000496189 MTIF2P46199 727 aaKnown RBP17.38■□□□□ 0.37
SF3A1-209ENST00000496189 PPP3CCP48454 512 aa17.38■□□□□ 0.37
SF3A1-209ENST00000496189 SLC8A3P57103 927 aa17.38■□□□□ 0.37
SF3A1-209ENST00000496189 KCNH2Q12809 1159 aa17.38■□□□□ 0.37
SF3A1-209ENST00000496189 TANGO2Q6ICL3 276 aa17.38■□□□□ 0.37
SF3A1-209ENST00000496189 FBXL6Q8N531 539 aa17.38■□□□□ 0.37
SF3A1-209ENST00000496189 ST13P5Q8NFI4 369 aaPredicted RBP17.38■□□□□ 0.37
SF3A1-209ENST00000496189 ASIC4Q96FT7 647 aa17.38■□□□□ 0.37
SF3A1-209ENST00000496189 SHDQ96IW2 340 aa17.38■□□□□ 0.37
SF3A1-209ENST00000496189 MYRFLQ96LU7 910 aa17.38■□□□□ 0.37
SF3A1-209ENST00000496189 SLITRK1Q96PX8 696 aa17.38■□□□□ 0.37
SF3A1-209ENST00000496189 MED15Q96RN5 788 aa17.38■□□□□ 0.37
SF3A1-209ENST00000496189 TRMT61BQ9BVS5 477 aaKnown RBP17.38■□□□□ 0.37
SF3A1-209ENST00000496189 ZNF518BQ9C0D4 1074 aa17.38■□□□□ 0.37
SF3A1-209ENST00000496189 TRPV4Q9HBA0 871 aa17.38■□□□□ 0.37
SF3A1-209ENST00000496189 C11orf16Q9NQ32 467 aa17.38■□□□□ 0.37
SF3A1-209ENST00000496189 CISHQ9NSE2 258 aa17.38■□□□□ 0.37
SF3A1-209ENST00000496189 FAM49BQ9NUQ9 324 aa17.38■□□□□ 0.37
SF3A1-209ENST00000496189 TRPM5Q9NZQ8 1165 aa17.38■□□□□ 0.37
SF3A1-209ENST00000496189 NFE2L3Q9Y4A8 694 aa17.38■□□□□ 0.37
SF3A1-209ENST00000496189 SYCE3A1L190 88 aa17.37■□□□□ 0.37
SF3A1-209ENST00000496189 CLDN5O00501 218 aa17.37■□□□□ 0.37
SF3A1-209ENST00000496189 FAM200BP0CF97 657 aa17.37■□□□□ 0.37
SF3A1-209ENST00000496189 PRKCSHP14314 528 aaPredicted RBP17.37■□□□□ 0.37
SF3A1-209ENST00000496189 PSMC3P17980 439 aa17.37■□□□□ 0.37
SF3A1-209ENST00000496189 MYL5Q02045 173 aa17.37■□□□□ 0.37
SF3A1-209ENST00000496189 IFRD2Q12894 506 aaPredicted RBP17.37■□□□□ 0.37
SF3A1-209ENST00000496189 ORC1Q13415 861 aa17.37■□□□□ 0.37
SF3A1-209ENST00000496189 CUL2Q13617 745 aa17.37■□□□□ 0.37
SF3A1-209ENST00000496189 ANO6Q4KMQ2 910 aa17.37■□□□□ 0.37
SF3A1-209ENST00000496189 HFE2Q6ZVN8 426 aa17.37■□□□□ 0.37
SF3A1-209ENST00000496189 SIX5Q8N196 739 aa17.37■□□□□ 0.37
SF3A1-209ENST00000496189 NUP93Q8N1F7 819 aa17.37■□□□□ 0.37
SF3A1-209ENST00000496189 ANKRD20A12PQ8NF67 263 aa17.37■□□□□ 0.37
SF3A1-209ENST00000496189 SLC2A14Q8TDB8 520 aa17.37■□□□□ 0.37
SF3A1-209ENST00000496189 IRF7Q92985 503 aa17.37■□□□□ 0.37
SF3A1-209ENST00000496189 HEXIM2Q96MH2 286 aaKnown RBP17.37■□□□□ 0.37
SF3A1-209ENST00000496189 ZSWIM3Q96MP5 696 aa17.37■□□□□ 0.37
SF3A1-209ENST00000496189 SMOC2Q9H3U7 446 aa17.37■□□□□ 0.37
SF3A1-209ENST00000496189 BRD9Q9H8M2 597 aa17.37■□□□□ 0.37
SF3A1-209ENST00000496189 IL21Q9HBE4 155 aa17.37■□□□□ 0.37
SF3A1-209ENST00000496189 TRPC7Q9HCX4 862 aa17.37■□□□□ 0.37
SF3A1-209ENST00000496189 KRT82Q9NSB4 513 aa17.37■□□□□ 0.37
SF3A1-209ENST00000496189 THG1LQ9NWX6 298 aaKnown RBP17.37■□□□□ 0.37
SF3A1-209ENST00000496189 NME7Q9Y5B8 376 aa17.37■□□□□ 0.37
SF3A1-209ENST00000496189 F11P03951 625 aa17.36■□□□□ 0.37
SF3A1-209ENST00000496189 TPM2P07951 284 aa17.36■□□□□ 0.37
SF3A1-209ENST00000496189 EEF1GP26641 437 aaKnown RBP17.36■□□□□ 0.37
SF3A1-209ENST00000496189 ADORA2BP29275 332 aa17.36■□□□□ 0.37
SF3A1-209ENST00000496189 WEE1P30291 646 aa17.36■□□□□ 0.37
SF3A1-209ENST00000496189 GPC5P78333 572 aa17.36■□□□□ 0.37
SF3A1-209ENST00000496189 LRMPQ12912 555 aa17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms