RNA–Protein interactions for RNA: ENST00000494956.1

NELFE-213, Transcript of negative elongation factor complex member E, humanhuman

TSL 3

Gene NELFE, Length 568 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NELFE-213ENST00000494956 HMGXB4Q9UGU5 601 aa11.34□□□□□ -0.59
NELFE-213ENST00000494956 F5P12259 2224 aa11.33□□□□□ -0.59
NELFE-213ENST00000494956 HELZP42694 1942 aaKnown RBP11.33□□□□□ -0.6
NELFE-213ENST00000494956 PRR23AA6NEV1 266 aa11.33□□□□□ -0.6
NELFE-213ENST00000494956 OTOL1A6NHN0 477 aaPredicted RBP11.33□□□□□ -0.6
NELFE-213ENST00000494956 A8MXQ7 604 aa11.33□□□□□ -0.6
NELFE-213ENST00000494956 F8VP50 259 aa11.33□□□□□ -0.6
NELFE-213ENST00000494956 CHADO15335 359 aa11.33□□□□□ -0.6
NELFE-213ENST00000494956 CALUO43852 315 aaPredicted RBP11.33□□□□□ -0.6
NELFE-213ENST00000494956 TACC1O75410 805 aa11.33□□□□□ -0.6
NELFE-213ENST00000494956 AKAP3O75969 853 aa11.33□□□□□ -0.6
NELFE-213ENST00000494956 NOL4O94818 638 aa11.33□□□□□ -0.6
NELFE-213ENST00000494956 FGF19O95750 216 aa11.33□□□□□ -0.6
NELFE-213ENST00000494956 MYL1P05976 194 aa11.33□□□□□ -0.6
NELFE-213ENST00000494956 PTPN1P18031 435 aaKnown RBP11.33□□□□□ -0.6
NELFE-213ENST00000494956 NR2F2P24468 414 aa11.33□□□□□ -0.6
NELFE-213ENST00000494956 CLDN10P78369 228 aa11.33□□□□□ -0.6
NELFE-213ENST00000494956 IFRD2Q12894 506 aaPredicted RBP11.33□□□□□ -0.6
NELFE-213ENST00000494956 NCOA4Q13772 614 aa11.33□□□□□ -0.6
NELFE-213ENST00000494956 ZNF699Q32M78 642 aa11.33□□□□□ -0.6
NELFE-213ENST00000494956 ISM2Q6H9L7 571 aa11.33□□□□□ -0.6
NELFE-213ENST00000494956 C4orf50Q6ZRC1 276 aa11.33□□□□□ -0.6
NELFE-213ENST00000494956 SV2AQ7L0J3 742 aa11.33□□□□□ -0.6
NELFE-213ENST00000494956 ARL14EPQ8N8R7 260 aaPredicted RBP11.33□□□□□ -0.6
NELFE-213ENST00000494956 ENGASEQ8NFI3 743 aa11.33□□□□□ -0.6
NELFE-213ENST00000494956 GOLGA5Q8TBA6 731 aa11.33□□□□□ -0.6
NELFE-213ENST00000494956 MYCBPAPQ8TBZ2 947 aa11.33□□□□□ -0.6
NELFE-213ENST00000494956 BPIFB1Q8TDL5 484 aa11.33□□□□□ -0.6
NELFE-213ENST00000494956 CSGALNACT1Q8TDX6 532 aa11.33□□□□□ -0.6
NELFE-213ENST00000494956 FUBP3Q96I24 572 aaKnown RBP eCLIP11.33□□□□□ -0.6
NELFE-213ENST00000494956 B3GNT5Q9BYG0 378 aa11.33□□□□□ -0.6
NELFE-213ENST00000494956 IRF2BPLQ9H1B7 796 aa11.33□□□□□ -0.6
NELFE-213ENST00000494956 TRAF3IP3Q9Y228 551 aa11.33□□□□□ -0.6
NELFE-213ENST00000494956 PROB1E7EW31 1015 aa11.32□□□□□ -0.6
NELFE-213ENST00000494956 HLA-DRAP01903 254 aa11.32□□□□□ -0.6
NELFE-213ENST00000494956 ARSAP15289 507 aa11.32□□□□□ -0.6
NELFE-213ENST00000494956 CTHP32929 405 aa11.32□□□□□ -0.6
NELFE-213ENST00000494956 AVPR1AP37288 418 aa11.32□□□□□ -0.6
NELFE-213ENST00000494956 MAGEA11P43364 429 aa11.32□□□□□ -0.6
NELFE-213ENST00000494956 GCLMP48507 274 aa11.32□□□□□ -0.6
NELFE-213ENST00000494956 VAMP7P51809 220 aa11.32□□□□□ -0.6
NELFE-213ENST00000494956 KPNA1P52294 538 aaPredicted RBP11.32□□□□□ -0.6
NELFE-213ENST00000494956 CSTF1Q05048 431 aaKnown RBP11.32□□□□□ -0.6
NELFE-213ENST00000494956 PPP3CAQ08209 521 aa11.32□□□□□ -0.6
NELFE-213ENST00000494956 MTAPQ13126 283 aa11.32□□□□□ -0.6
NELFE-213ENST00000494956 KCNB1Q14721 858 aa11.32□□□□□ -0.6
NELFE-213ENST00000494956 PON2Q15165 354 aa11.32□□□□□ -0.6
NELFE-213ENST00000494956 ZACNQ401N2 412 aa11.32□□□□□ -0.6
NELFE-213ENST00000494956 ZCWPW2Q504Y3 356 aa11.32□□□□□ -0.6
NELFE-213ENST00000494956 ZNF667Q5HYK9 610 aa11.32□□□□□ -0.6
NELFE-213ENST00000494956 NAIF1Q69YI7 327 aaPredicted RBP11.32□□□□□ -0.6
NELFE-213ENST00000494956 CELF5Q8N6W0 485 aaKnown RBP11.32□□□□□ -0.6
NELFE-213ENST00000494956 TMC2Q8TDI7 906 aa11.32□□□□□ -0.6
NELFE-213ENST00000494956 MRPS31Q92665 395 aaKnown RBP11.32□□□□□ -0.6
NELFE-213ENST00000494956 CCDC47Q96A33 483 aaKnown RBP11.32□□□□□ -0.6
NELFE-213ENST00000494956 SYAP1Q96A49 352 aaPredicted RBP11.32□□□□□ -0.6
NELFE-213ENST00000494956 E2F7Q96AV8 911 aa11.32□□□□□ -0.6
NELFE-213ENST00000494956 CLDN23Q96B33 292 aa11.32□□□□□ -0.6
NELFE-213ENST00000494956 CHFRQ96EP1 664 aa11.32□□□□□ -0.6
NELFE-213ENST00000494956 MYRFLQ96LU7 910 aa11.32□□□□□ -0.6
NELFE-213ENST00000494956 KCNK16Q96T55 309 aa11.32□□□□□ -0.6
NELFE-213ENST00000494956 EBF3Q9H4W6 596 aa11.32□□□□□ -0.6
NELFE-213ENST00000494956 LMAN1LQ9HAT1 526 aa11.32□□□□□ -0.6
NELFE-213ENST00000494956 APOBEC3GQ9HC16 384 aaKnown RBP11.32□□□□□ -0.6
NELFE-213ENST00000494956 TRPV5Q9NQA5 729 aa11.32□□□□□ -0.6
NELFE-213ENST00000494956 HPS4Q9NQG7 708 aa11.32□□□□□ -0.6
NELFE-213ENST00000494956 GKN1Q9NS71 199 aa11.32□□□□□ -0.6
NELFE-213ENST00000494956 SPECC1L-ADORA2AF8WAN1 911 aa11.31□□□□□ -0.6
NELFE-213ENST00000494956 MAN2B1O00754 1011 aa11.31□□□□□ -0.6
NELFE-213ENST00000494956 SCAMP3O14828 347 aaKnown RBP11.31□□□□□ -0.6
NELFE-213ENST00000494956 LAMTOR5O43504 91 aa11.31□□□□□ -0.6
NELFE-213ENST00000494956 GADD45BO75293 160 aaPredicted RBP11.31□□□□□ -0.6
NELFE-213ENST00000494956 STAU1O95793 577 aaKnown RBP11.31□□□□□ -0.6
NELFE-213ENST00000494956 CHRNB1P11230 501 aa11.31□□□□□ -0.6
NELFE-213ENST00000494956 CCDC130P13994 396 aa11.31□□□□□ -0.6
NELFE-213ENST00000494956 ATICP31939 592 aa11.31□□□□□ -0.6
NELFE-213ENST00000494956 PIK3CAP42336 1068 aa11.31□□□□□ -0.6
NELFE-213ENST00000494956 PRCPP42785 496 aa11.31□□□□□ -0.6
NELFE-213ENST00000494956 PMS1P54277 932 aaKnown RBP11.31□□□□□ -0.6
NELFE-213ENST00000494956 NUCB2P80303 420 aa11.31□□□□□ -0.6
NELFE-213ENST00000494956 ZXDBP98169 803 aa11.31□□□□□ -0.6
NELFE-213ENST00000494956 ADAM9Q13443 819 aa11.31□□□□□ -0.6
NELFE-213ENST00000494956 GAS6Q14393 721 aa11.31□□□□□ -0.6
NELFE-213ENST00000494956 ARHGAP29Q52LW3 1261 aa11.31□□□□□ -0.6
NELFE-213ENST00000494956 Q6ZS52 159 aa11.31□□□□□ -0.6
NELFE-213ENST00000494956 PAQR9Q6ZVX9 377 aa11.31□□□□□ -0.6
NELFE-213ENST00000494956 ACOT1Q86TX2 421 aa11.31□□□□□ -0.6
NELFE-213ENST00000494956 MON1AQ86VX9 555 aa11.31□□□□□ -0.6
NELFE-213ENST00000494956 GUF1Q8N442 669 aaKnown RBP11.31□□□□□ -0.6
NELFE-213ENST00000494956 B3GALNT2Q8NCR0 500 aa11.31□□□□□ -0.6
NELFE-213ENST00000494956 TRMT2BQ96GJ1 504 aaKnown RBP11.31□□□□□ -0.6
NELFE-213ENST00000494956 OSBPL6Q9BZF3 934 aa11.31□□□□□ -0.6
NELFE-213ENST00000494956 TDP1Q9NUW8 608 aa11.31□□□□□ -0.6
NELFE-213ENST00000494956 C2orf42Q9NWW7 574 aa11.31□□□□□ -0.6
NELFE-213ENST00000494956 OBP2AQ9NY56 170 aa11.31□□□□□ -0.6
NELFE-213ENST00000494956 GCNT4Q9P109 453 aa11.31□□□□□ -0.6
NELFE-213ENST00000494956 FRMD4BQ9Y2L6 1034 aa11.31□□□□□ -0.6
NELFE-213ENST00000494956 PCDHA5Q9Y5H7 936 aa11.31□□□□□ -0.6
NELFE-213ENST00000494956 MYO16Q9Y6X6 1858 aa11.31□□□□□ -0.6
NELFE-213ENST00000494956 PIEZO1Q92508 2521 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms