RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 TGFB3P10600 412 aa17.36■□□□□ 0.37
CCDC88B-210ENST00000494566 CYP2C8P10632 490 aa17.36■□□□□ 0.37
CCDC88B-210ENST00000494566 SSTR1P30872 391 aa17.36■□□□□ 0.37
CCDC88B-210ENST00000494566 MXD4Q14582 209 aaPredicted RBP17.36■□□□□ 0.37
CCDC88B-210ENST00000494566 NBPF20Q3BBV1 942 aa17.36■□□□□ 0.37
CCDC88B-210ENST00000494566 C1orf127Q8N9H9 656 aa17.36■□□□□ 0.37
CCDC88B-210ENST00000494566 MMP19Q99542 508 aa17.36■□□□□ 0.37
CCDC88B-210ENST00000494566 METTL5Q9NRN9 209 aaKnown RBP17.36■□□□□ 0.37
CCDC88B-210ENST00000494566 NOP53Q9NZM5 478 aaKnown RBP17.36■□□□□ 0.37
CCDC88B-210ENST00000494566 A0A0G2JLL6 359 aaPredicted RBP17.35■□□□□ 0.37
CCDC88B-210ENST00000494566 SGK1O00141 431 aa17.35■□□□□ 0.37
CCDC88B-210ENST00000494566 GDF10P55107 478 aa17.35■□□□□ 0.37
CCDC88B-210ENST00000494566 KCTD2Q14681 263 aa17.35■□□□□ 0.37
CCDC88B-210ENST00000494566 MFSD5Q6N075 450 aa17.35■□□□□ 0.37
CCDC88B-210ENST00000494566 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.35■□□□□ 0.37
CCDC88B-210ENST00000494566 PRRT2Q7Z6L0 340 aaPredicted RBP17.35■□□□□ 0.37
CCDC88B-210ENST00000494566 ANKRD36BP1Q96IX9 119 aa17.35■□□□□ 0.37
CCDC88B-210ENST00000494566 TRABDQ9H4I3 376 aa17.35■□□□□ 0.37
CCDC88B-210ENST00000494566 SYNCQ9H7C4 482 aa17.35■□□□□ 0.37
CCDC88B-210ENST00000494566 hCG_1818297A0A087WSY0 165 aa17.35■□□□□ 0.37
CCDC88B-210ENST00000494566 A0A087WZ62 844 aa17.35■□□□□ 0.37
CCDC88B-210ENST00000494566 PSMC1P62191 440 aaKnown RBP17.35■□□□□ 0.37
CCDC88B-210ENST00000494566 JADE1Q6IE81 842 aa17.35■□□□□ 0.37
CCDC88B-210ENST00000494566 SYDE1Q6ZW31 735 aaPredicted RBP17.35■□□□□ 0.37
CCDC88B-210ENST00000494566 BZW1Q7L1Q6 419 aaKnown RBP17.35■□□□□ 0.37
CCDC88B-210ENST00000494566 RCOR2Q8IZ40 523 aa17.35■□□□□ 0.37
CCDC88B-210ENST00000494566 L3MBTL3Q96JM7 780 aaPredicted RBP17.35■□□□□ 0.37
CCDC88B-210ENST00000494566 FAM167AQ96KS9 214 aa17.35■□□□□ 0.37
CCDC88B-210ENST00000494566 FDXACB1Q9BRP7 624 aaPredicted RBP17.35■□□□□ 0.37
CCDC88B-210ENST00000494566 YIPF3Q9GZM5 350 aa17.35■□□□□ 0.37
CCDC88B-210ENST00000494566 AGTPBP1Q9UPW5 1226 aa17.35■□□□□ 0.37
CCDC88B-210ENST00000494566 CHKBQ9Y259 395 aa17.35■□□□□ 0.37
CCDC88B-210ENST00000494566 NUMBLQ9Y6R0 609 aa17.35■□□□□ 0.37
CCDC88B-210ENST00000494566 LACTBL1A8MY62 500 aa17.34■□□□□ 0.37
CCDC88B-210ENST00000494566 ACKR2O00590 384 aa17.34■□□□□ 0.37
CCDC88B-210ENST00000494566 ZNF286BP0CG31 522 aa17.34■□□□□ 0.37
CCDC88B-210ENST00000494566 ATP11AP98196 1134 aa17.34■□□□□ 0.37
CCDC88B-210ENST00000494566 MBTD1Q05BQ5 628 aa17.34■□□□□ 0.37
CCDC88B-210ENST00000494566 MKRN3Q13064 507 aaKnown RBP17.34■□□□□ 0.37
CCDC88B-210ENST00000494566 TAF11Q15544 211 aa17.34■□□□□ 0.37
CCDC88B-210ENST00000494566 MDH1BQ5I0G3 518 aa17.34■□□□□ 0.37
CCDC88B-210ENST00000494566 PPP1R15BQ5SWA1 713 aa17.34■□□□□ 0.37
CCDC88B-210ENST00000494566 ARHGEF18Q6ZSZ5 1173 aa17.34■□□□□ 0.37
CCDC88B-210ENST00000494566 UBA3Q8TBC4 463 aa17.34■□□□□ 0.37
CCDC88B-210ENST00000494566 P3H4Q92791 437 aa17.34■□□□□ 0.37
CCDC88B-210ENST00000494566 RBM41Q96IZ5 413 aaKnown RBP17.34■□□□□ 0.37
CCDC88B-210ENST00000494566 ROPN1BQ9BZX4 212 aaPredicted RBP17.34■□□□□ 0.37
CCDC88B-210ENST00000494566 ROPN1Q9HAT0 212 aaPredicted RBP17.34■□□□□ 0.37
CCDC88B-210ENST00000494566 RXFP1Q9HBX9 757 aa17.34■□□□□ 0.37
CCDC88B-210ENST00000494566 PTPRHQ9HD43 1115 aa17.34■□□□□ 0.37
CCDC88B-210ENST00000494566 UBN1Q9NPG3 1134 aa17.34■□□□□ 0.37
CCDC88B-210ENST00000494566 IGKV6-21A0A0C4DH24 114 aa17.34■□□□□ 0.37
CCDC88B-210ENST00000494566 TJP3O95049 919 aa17.34■□□□□ 0.37
CCDC88B-210ENST00000494566 GSTA1P08263 222 aa17.34■□□□□ 0.37
CCDC88B-210ENST00000494566 KRT3P12035 628 aa17.34■□□□□ 0.37
CCDC88B-210ENST00000494566 NEFHP12036 1026 aa17.34■□□□□ 0.37
CCDC88B-210ENST00000494566 ANK1P16157 1881 aa17.34■□□□□ 0.37
CCDC88B-210ENST00000494566 PDIA2Q13087 525 aaKnown RBP17.34■□□□□ 0.37
CCDC88B-210ENST00000494566 ANKRD20A2Q5SQ80 823 aa17.34■□□□□ 0.37
CCDC88B-210ENST00000494566 SH3PXD2AQ5TCZ1 1133 aa17.34■□□□□ 0.37
CCDC88B-210ENST00000494566 ANKRD20A1Q5TYW2 823 aa17.34■□□□□ 0.37
CCDC88B-210ENST00000494566 ANKRD20A3Q5VUR7 823 aa17.34■□□□□ 0.37
CCDC88B-210ENST00000494566 PRR11Q96HE9 360 aaPredicted RBP17.34■□□□□ 0.37
CCDC88B-210ENST00000494566 RPF1Q9H9Y2 349 aaKnown RBP17.34■□□□□ 0.37
CCDC88B-210ENST00000494566 A0A0G2JND7 137 aa17.34■□□□□ 0.37
CCDC88B-210ENST00000494566 LRCH4O75427 683 aa17.34■□□□□ 0.37
CCDC88B-210ENST00000494566 GRAP2O75791 330 aa17.34■□□□□ 0.37
CCDC88B-210ENST00000494566 MYCNP04198 464 aaPredicted RBP17.34■□□□□ 0.37
CCDC88B-210ENST00000494566 ERBB2P04626 1255 aa17.34■□□□□ 0.37
CCDC88B-210ENST00000494566 GM2AP17900 193 aa17.34■□□□□ 0.37
CCDC88B-210ENST00000494566 CDKN2BP42772 138 aa17.34■□□□□ 0.37
CCDC88B-210ENST00000494566 ZNF268Q14587 947 aaPredicted RBP17.34■□□□□ 0.37
CCDC88B-210ENST00000494566 GALNTL6Q49A17 601 aa17.34■□□□□ 0.37
CCDC88B-210ENST00000494566 TSHZ1Q6ZSZ6 1077 aa17.34■□□□□ 0.37
CCDC88B-210ENST00000494566 HSPH1Q92598 858 aa17.34■□□□□ 0.37
CCDC88B-210ENST00000494566 CXCL16Q9H2A7 254 aa17.34■□□□□ 0.37
CCDC88B-210ENST00000494566 FAM47DPA6NHR8 397 aa17.33■□□□□ 0.37
CCDC88B-210ENST00000494566 CDH16O75309 829 aa17.33■□□□□ 0.37
CCDC88B-210ENST00000494566 PROZP22891 400 aa17.33■□□□□ 0.37
CCDC88B-210ENST00000494566 GCKP35557 465 aa17.33■□□□□ 0.37
CCDC88B-210ENST00000494566 CETN2P41208 172 aa17.33■□□□□ 0.37
CCDC88B-210ENST00000494566 IREB2P48200 963 aaKnown RBP17.33■□□□□ 0.37
CCDC88B-210ENST00000494566 RAD23BP54727 409 aa17.33■□□□□ 0.37
CCDC88B-210ENST00000494566 TFDP3Q5H9I0 405 aa17.33■□□□□ 0.37
CCDC88B-210ENST00000494566 LONP2Q86WA8 852 aa17.33■□□□□ 0.37
CCDC88B-210ENST00000494566 FZD8Q9H461 694 aa17.33■□□□□ 0.37
CCDC88B-210ENST00000494566 AKT3Q9Y243 479 aa17.33■□□□□ 0.37
CCDC88B-210ENST00000494566 GINS2Q9Y248 185 aa17.33■□□□□ 0.37
CCDC88B-210ENST00000494566 A0A0G2JMZ2 1700 aa17.33■□□□□ 0.36
CCDC88B-210ENST00000494566 LRRC37A2A6NM11 1700 aa17.33■□□□□ 0.36
CCDC88B-210ENST00000494566 CFAP73A6NFT4 308 aa17.33■□□□□ 0.36
CCDC88B-210ENST00000494566 DNALI1O14645 258 aaPredicted RBP17.33■□□□□ 0.36
CCDC88B-210ENST00000494566 LGR5O75473 907 aa17.33■□□□□ 0.36
CCDC88B-210ENST00000494566 STAG3L1P0CL83 205 aa17.33■□□□□ 0.36
CCDC88B-210ENST00000494566 INSRRP14616 1297 aa17.33■□□□□ 0.36
CCDC88B-210ENST00000494566 KRT4P19013 534 aa17.33■□□□□ 0.36
CCDC88B-210ENST00000494566 CPA2P48052 419 aa17.33■□□□□ 0.36
CCDC88B-210ENST00000494566 IL9RQ01113 521 aa17.33■□□□□ 0.36
CCDC88B-210ENST00000494566 ZNF667Q5HYK9 610 aa17.33■□□□□ 0.36
CCDC88B-210ENST00000494566 HHATQ5VTY9 493 aa17.33■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms