RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 IFNAR2P48551 515 aa16.51■□□□□ 0.23
MCF2L-228ENST00000487354 SEC13P55735 322 aa16.51■□□□□ 0.23
MCF2L-228ENST00000487354 PSMD2Q13200 908 aa16.51■□□□□ 0.23
MCF2L-228ENST00000487354 NFE2Q16621 373 aaPredicted RBP16.51■□□□□ 0.23
MCF2L-228ENST00000487354 SV2CQ496J9 727 aa16.51■□□□□ 0.23
MCF2L-228ENST00000487354 ADALQ6DHV7 355 aa16.51■□□□□ 0.23
MCF2L-228ENST00000487354 FRMD1Q8N878 549 aa16.51■□□□□ 0.23
MCF2L-228ENST00000487354 ARL14EPQ8N8R7 260 aaPredicted RBP16.51■□□□□ 0.23
MCF2L-228ENST00000487354 SH3RF2Q8TEC5 729 aa16.51■□□□□ 0.23
MCF2L-228ENST00000487354 FNBP1Q96RU3 617 aa16.51■□□□□ 0.23
MCF2L-228ENST00000487354 ST6GALNAC4Q9H4F1 302 aa16.51■□□□□ 0.23
MCF2L-228ENST00000487354 EVLQ9UI08 416 aaPredicted RBP16.51■□□□□ 0.23
MCF2L-228ENST00000487354 AGO2Q9UKV8 859 aaKnown RBP16.51■□□□□ 0.23
MCF2L-228ENST00000487354 MMP17Q9ULZ9 603 aa16.51■□□□□ 0.23
MCF2L-228ENST00000487354 SMG1Q96Q15 3661 aaKnown RBP16.5■□□□□ 0.23
MCF2L-228ENST00000487354 TRAV19A0A0A6YYK7 116 aa16.5■□□□□ 0.23
MCF2L-228ENST00000487354 PPP1R37O75864 691 aa16.5■□□□□ 0.23
MCF2L-228ENST00000487354 CKMP06732 381 aa16.5■□□□□ 0.23
MCF2L-228ENST00000487354 TSPY1Q01534 308 aa16.5■□□□□ 0.23
MCF2L-228ENST00000487354 POU5F1Q01860 360 aaKnown RBP16.5■□□□□ 0.23
MCF2L-228ENST00000487354 GRIN1Q05586 938 aa16.5■□□□□ 0.23
MCF2L-228ENST00000487354 DHX8Q14562 1220 aaKnown RBP16.5■□□□□ 0.23
MCF2L-228ENST00000487354 MCM6Q14566 821 aa16.5■□□□□ 0.23
MCF2L-228ENST00000487354 CRY1Q16526 586 aa16.5■□□□□ 0.23
MCF2L-228ENST00000487354 CFAP221Q4G0U5 840 aa16.5■□□□□ 0.23
MCF2L-228ENST00000487354 USP39Q53GS9 565 aaKnown RBP16.5■□□□□ 0.23
MCF2L-228ENST00000487354 C2orf27AQ580R0 203 aa16.5■□□□□ 0.23
MCF2L-228ENST00000487354 RILPL1Q5EBL4 403 aa16.5■□□□□ 0.23
MCF2L-228ENST00000487354 ARL6IP4Q66PJ3 421 aaKnown RBP16.5■□□□□ 0.23
MCF2L-228ENST00000487354 KIAA1211LQ6NV74 962 aa16.5■□□□□ 0.23
MCF2L-228ENST00000487354 C11orf74Q86VG3 221 aa16.5■□□□□ 0.23
MCF2L-228ENST00000487354 C1orf127Q8N9H9 656 aa16.5■□□□□ 0.23
MCF2L-228ENST00000487354 CDK5RAP3Q96JB5 506 aa16.5■□□□□ 0.23
MCF2L-228ENST00000487354 ZNF560Q96MR9 790 aa16.5■□□□□ 0.23
MCF2L-228ENST00000487354 ACBD6Q9BR61 282 aa16.5■□□□□ 0.23
MCF2L-228ENST00000487354 STRA6Q9BX79 667 aa16.5■□□□□ 0.23
MCF2L-228ENST00000487354 TMEM74BQ9NUR3 256 aa16.5■□□□□ 0.23
MCF2L-228ENST00000487354 DDX43Q9NXZ2 648 aaKnown RBP16.5■□□□□ 0.23
MCF2L-228ENST00000487354 UXTQ9UBK9 157 aaPredicted RBP16.5■□□□□ 0.23
MCF2L-228ENST00000487354 MBD1Q9UIS9 605 aaPredicted RBP16.5■□□□□ 0.23
MCF2L-228ENST00000487354 ARHGAP26Q9UNA1 814 aa16.5■□□□□ 0.23
MCF2L-228ENST00000487354 ADAMTS20P59510 1910 aa16.5■□□□□ 0.23
MCF2L-228ENST00000487354 HYAL3O43820 417 aaPredicted RBP16.49■□□□□ 0.23
MCF2L-228ENST00000487354 CAPNS1P04632 268 aa16.49■□□□□ 0.23
MCF2L-228ENST00000487354 PLCG1P19174 1290 aa16.49■□□□□ 0.23
MCF2L-228ENST00000487354 POLR2BP30876 1174 aaKnown RBP16.49■□□□□ 0.23
MCF2L-228ENST00000487354 RPL10AP62906 217 aaKnown RBP16.49■□□□□ 0.23
MCF2L-228ENST00000487354 PIP4P1Q86T03 277 aa16.49■□□□□ 0.23
MCF2L-228ENST00000487354 CCDC33Q8N5R6 958 aa16.49■□□□□ 0.23
MCF2L-228ENST00000487354 TTC16Q8NEE8 873 aa16.49■□□□□ 0.23
MCF2L-228ENST00000487354 RLN3Q8WXF3 142 aa16.49■□□□□ 0.23
MCF2L-228ENST00000487354 ZCCHC14Q8WYQ9 949 aaKnown RBP16.49■□□□□ 0.23
MCF2L-228ENST00000487354 PIGKQ92643 395 aa16.49■□□□□ 0.23
MCF2L-228ENST00000487354 RAD54LQ92698 747 aa16.49■□□□□ 0.23
MCF2L-228ENST00000487354 ZSCAN31Q96LW9 406 aaPredicted RBP16.49■□□□□ 0.23
MCF2L-228ENST00000487354 GTF3C4Q9UKN8 822 aa16.49■□□□□ 0.23
MCF2L-228ENST00000487354 KLK13Q9UKR3 277 aa16.49■□□□□ 0.23
MCF2L-228ENST00000487354 CELSR3Q9NYQ7 3312 aa16.48■□□□□ 0.23
MCF2L-228ENST00000487354 GABRDO14764 452 aa16.48■□□□□ 0.23
MCF2L-228ENST00000487354 SLC26A4O43511 780 aa16.48■□□□□ 0.23
MCF2L-228ENST00000487354 CYP17A1P05093 508 aa16.48■□□□□ 0.23
MCF2L-228ENST00000487354 ITGB3P05106 788 aa16.48■□□□□ 0.23
MCF2L-228ENST00000487354 P2RY2P41231 377 aa16.48■□□□□ 0.23
MCF2L-228ENST00000487354 PTGER3P43115 390 aa16.48■□□□□ 0.23
MCF2L-228ENST00000487354 DHPSP49366 369 aaPredicted RBP16.48■□□□□ 0.23
MCF2L-228ENST00000487354 RING1Q06587 406 aa16.48■□□□□ 0.23
MCF2L-228ENST00000487354 KCNA1Q09470 495 aa16.48■□□□□ 0.23
MCF2L-228ENST00000487354 UAP1L1Q3KQV9 507 aa16.48■□□□□ 0.23
MCF2L-228ENST00000487354 TRIM61Q5EBN2 209 aa16.48■□□□□ 0.23
MCF2L-228ENST00000487354 PEAR1Q5VY43 1037 aaPredicted RBP16.48■□□□□ 0.23
MCF2L-228ENST00000487354 C12orf40Q86WS4 652 aa16.48■□□□□ 0.23
MCF2L-228ENST00000487354 NT5DC4Q86YG4 428 aa16.48■□□□□ 0.23
MCF2L-228ENST00000487354 EXOC4Q96A65 974 aa16.48■□□□□ 0.23
MCF2L-228ENST00000487354 SIX4Q9UIU6 781 aa16.48■□□□□ 0.23
MCF2L-228ENST00000487354 NEUROG3Q9Y4Z2 214 aa16.48■□□□□ 0.23
MCF2L-228ENST00000487354 PLXNB3Q9ULL4 1909 aa16.48■□□□□ 0.23
MCF2L-228ENST00000487354 SGK1O00141 431 aa16.47■□□□□ 0.23
MCF2L-228ENST00000487354 ADAM23O75077 832 aa16.47■□□□□ 0.23
MCF2L-228ENST00000487354 IL18RAPO95256 599 aa16.47■□□□□ 0.23
MCF2L-228ENST00000487354 PNPLA4P41247 253 aa16.47■□□□□ 0.23
MCF2L-228ENST00000487354 USP46P62068 366 aa16.47■□□□□ 0.23
MCF2L-228ENST00000487354 ACAP1Q15027 740 aa16.47■□□□□ 0.23
MCF2L-228ENST00000487354 MAP7D1Q3KQU3 841 aa16.47■□□□□ 0.23
MCF2L-228ENST00000487354 SLFN12LQ6IEE8 588 aa16.47■□□□□ 0.23
MCF2L-228ENST00000487354 FAM171BQ6P995 826 aa16.47■□□□□ 0.23
MCF2L-228ENST00000487354 LIMS2Q7Z4I7 341 aa16.47■□□□□ 0.23
MCF2L-228ENST00000487354 BRSK2Q8IWQ3 736 aa16.47■□□□□ 0.23
MCF2L-228ENST00000487354 ALLCQ8N6M5 410 aa16.47■□□□□ 0.23
MCF2L-228ENST00000487354 IL17RCQ8NAC3 791 aa16.47■□□□□ 0.23
MCF2L-228ENST00000487354 AK8Q96MA6 479 aa16.47■□□□□ 0.23
MCF2L-228ENST00000487354 GDAP2Q9NXN4 497 aa16.47■□□□□ 0.23
MCF2L-228ENST00000487354 AGAP1Q9UPQ3 857 aa16.47■□□□□ 0.23
MCF2L-228ENST00000487354 ATXN2Q99700 1313 aaKnown RBP16.46■□□□□ 0.23
MCF2L-228ENST00000487354 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa16.46■□□□□ 0.23
MCF2L-228ENST00000487354 SPAARA0A1B0GVQ0 90 aa16.46■□□□□ 0.23
MCF2L-228ENST00000487354 TAF4O00268 1085 aa16.46■□□□□ 0.23
MCF2L-228ENST00000487354 LEFTY2O00292 366 aa16.46■□□□□ 0.23
MCF2L-228ENST00000487354 TNFRSF10BO14763 440 aa16.46■□□□□ 0.23
MCF2L-228ENST00000487354 ATP2C2O75185 946 aa16.46■□□□□ 0.23
MCF2L-228ENST00000487354 NFATC1O95644 943 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms