RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 SLC30A1Q9Y6M5 507 aa17.07■□□□□ 0.32
COL7A1-210ENST00000487017 OGTO15294 1046 aa17.07■□□□□ 0.32
COL7A1-210ENST00000487017 PLOD1Q02809 727 aaPredicted RBP17.07■□□□□ 0.32
COL7A1-210ENST00000487017 MYBPC2Q14324 1141 aa17.07■□□□□ 0.32
COL7A1-210ENST00000487017 CRYMQ14894 314 aa17.07■□□□□ 0.32
COL7A1-210ENST00000487017 LAYNQ6UX15 382 aa17.07■□□□□ 0.32
COL7A1-210ENST00000487017 DENND5BQ6ZUT9 1274 aa17.07■□□□□ 0.32
COL7A1-210ENST00000487017 KCND1Q9NSA2 647 aa17.07■□□□□ 0.32
COL7A1-210ENST00000487017 RIC8BQ9NVN3 520 aa17.07■□□□□ 0.32
COL7A1-210ENST00000487017 SALL1Q9NSC2 1324 aa17.07■□□□□ 0.32
COL7A1-210ENST00000487017 TNPO2O14787 897 aaKnown RBP17.07■□□□□ 0.32
COL7A1-210ENST00000487017 XPO1O14980 1071 aaKnown RBP17.07■□□□□ 0.32
COL7A1-210ENST00000487017 UBOX5O94941 541 aa17.07■□□□□ 0.32
COL7A1-210ENST00000487017 PCSK1P29120 753 aa17.07■□□□□ 0.32
COL7A1-210ENST00000487017 TMEM62Q0P6H9 643 aa17.07■□□□□ 0.32
COL7A1-210ENST00000487017 CLEC16AQ2KHT3 1053 aa17.07■□□□□ 0.32
COL7A1-210ENST00000487017 RRM2BQ7LG56 351 aa17.07■□□□□ 0.32
COL7A1-210ENST00000487017 PATL1Q86TB9 770 aaKnown RBP17.07■□□□□ 0.32
COL7A1-210ENST00000487017 PLD3Q8IV08 490 aa17.07■□□□□ 0.32
COL7A1-210ENST00000487017 SCUBE1Q8IWY4 988 aa17.07■□□□□ 0.32
COL7A1-210ENST00000487017 AENQ8WTP8 325 aaKnown RBP17.07■□□□□ 0.32
COL7A1-210ENST00000487017 FAM162AQ96A26 154 aa17.07■□□□□ 0.32
COL7A1-210ENST00000487017 RXFP1Q9HBX9 757 aa17.07■□□□□ 0.32
COL7A1-210ENST00000487017 DAB1O75553 588 aa17.07■□□□□ 0.32
COL7A1-210ENST00000487017 SLC25A27O95847 323 aa17.07■□□□□ 0.32
COL7A1-210ENST00000487017 TCF7P36402 384 aaPredicted RBP17.07■□□□□ 0.32
COL7A1-210ENST00000487017 STX5Q13190 355 aa17.07■□□□□ 0.32
COL7A1-210ENST00000487017 KCNT1Q5JUK3 1230 aa17.07■□□□□ 0.32
COL7A1-210ENST00000487017 CGRRF1Q99675 332 aa17.07■□□□□ 0.32
COL7A1-210ENST00000487017 KATNAL1Q9BW62 490 aa17.07■□□□□ 0.32
COL7A1-210ENST00000487017 SHCBP1LQ9BZQ2 653 aa17.07■□□□□ 0.32
COL7A1-210ENST00000487017 OLFML3Q9NRN5 406 aa17.07■□□□□ 0.32
COL7A1-210ENST00000487017 SASH3O75995 380 aa17.06■□□□□ 0.32
COL7A1-210ENST00000487017 TGM2P21980 687 aa17.06■□□□□ 0.32
COL7A1-210ENST00000487017 NAMPTP43490 491 aa17.06■□□□□ 0.32
COL7A1-210ENST00000487017 FAM83EQ2M2I3 478 aa17.06■□□□□ 0.32
COL7A1-210ENST00000487017 KBTBD12Q3ZCT8 623 aa17.06■□□□□ 0.32
COL7A1-210ENST00000487017 SEZ6Q53EL9 994 aa17.06■□□□□ 0.32
COL7A1-210ENST00000487017 EARS2Q5JPH6 523 aaKnown RBP17.06■□□□□ 0.32
COL7A1-210ENST00000487017 OLFML2BQ68BL8 750 aa17.06■□□□□ 0.32
COL7A1-210ENST00000487017 INTS5Q6P9B9 1019 aaKnown RBP17.06■□□□□ 0.32
COL7A1-210ENST00000487017 ZCWPW1Q9H0M4 648 aa17.06■□□□□ 0.32
COL7A1-210ENST00000487017 DCLRE1BQ9H816 532 aa17.06■□□□□ 0.32
COL7A1-210ENST00000487017 IL1RL2Q9HB29 575 aa17.06■□□□□ 0.32
COL7A1-210ENST00000487017 ADGRB1O14514 1584 aa17.06■□□□□ 0.32
COL7A1-210ENST00000487017 ZC3H4Q9UPT8 1303 aaKnown RBP17.06■□□□□ 0.32
COL7A1-210ENST00000487017 NCAM1P13591 858 aa17.06■□□□□ 0.32
COL7A1-210ENST00000487017 CNDP1Q96KN2 507 aa17.06■□□□□ 0.32
COL7A1-210ENST00000487017 RTFDC1Q9BY42 306 aaPredicted RBP17.06■□□□□ 0.32
COL7A1-210ENST00000487017 MTMR12Q9C0I1 747 aa17.06■□□□□ 0.32
COL7A1-210ENST00000487017 DPP3Q9NY33 737 aa17.06■□□□□ 0.32
COL7A1-210ENST00000487017 RPS6KL1Q9Y6S9 549 aa17.06■□□□□ 0.32
COL7A1-210ENST00000487017 DYNC1LI2O43237 492 aaPredicted RBP17.06■□□□□ 0.32
COL7A1-210ENST00000487017 RIPK2O43353 540 aa17.06■□□□□ 0.32
COL7A1-210ENST00000487017 HNRNPRO43390 633 aaKnown RBP17.06■□□□□ 0.32
COL7A1-210ENST00000487017 PNPLA4P41247 253 aa17.06■□□□□ 0.32
COL7A1-210ENST00000487017 VPS72Q15906 364 aa17.06■□□□□ 0.32
COL7A1-210ENST00000487017 B4GALNT2Q8NHY0 566 aa17.06■□□□□ 0.32
COL7A1-210ENST00000487017 SEMA4AQ9H3S1 761 aa17.06■□□□□ 0.32
COL7A1-210ENST00000487017 PIDD1Q9HB75 910 aa17.06■□□□□ 0.32
COL7A1-210ENST00000487017 AK9Q5TCS8 1911 aa17.06■□□□□ 0.32
COL7A1-210ENST00000487017 MYO1GB0I1T2 1018 aa17.06■□□□□ 0.32
COL7A1-210ENST00000487017 TM9SF1O15321 606 aa17.06■□□□□ 0.32
COL7A1-210ENST00000487017 ANXA9O76027 345 aa17.06■□□□□ 0.32
COL7A1-210ENST00000487017 NPTXRO95502 500 aa17.06■□□□□ 0.32
COL7A1-210ENST00000487017 HMBSP08397 361 aa17.06■□□□□ 0.32
COL7A1-210ENST00000487017 THRAP10827 490 aa17.06■□□□□ 0.32
COL7A1-210ENST00000487017 SERPINB8P50452 374 aa17.06■□□□□ 0.32
COL7A1-210ENST00000487017 CNBD2Q96M20 576 aa17.06■□□□□ 0.32
COL7A1-210ENST00000487017 LZTS1Q9Y250 596 aa17.06■□□□□ 0.32
COL7A1-210ENST00000487017 IL31Q6EBC2 164 aa17.06■□□□□ 0.32
COL7A1-210ENST00000487017 MTDHQ86UE4 582 aaKnown RBP17.06■□□□□ 0.32
COL7A1-210ENST00000487017 KIF20BQ96Q89 1820 aa17.05■□□□□ 0.32
COL7A1-210ENST00000487017 ZBTB7AO95365 584 aa17.05■□□□□ 0.32
COL7A1-210ENST00000487017 ATP6V1G2O95670 118 aa17.05■□□□□ 0.32
COL7A1-210ENST00000487017 VDRP11473 427 aa17.05■□□□□ 0.32
COL7A1-210ENST00000487017 ITGA4P13612 1032 aa17.05■□□□□ 0.32
COL7A1-210ENST00000487017 CYP24A1Q07973 514 aa17.05■□□□□ 0.32
COL7A1-210ENST00000487017 TAS1R2Q8TE23 839 aa17.05■□□□□ 0.32
COL7A1-210ENST00000487017 POP1Q99575 1024 aaKnown RBP17.05■□□□□ 0.32
COL7A1-210ENST00000487017 C17orf80Q9BSJ5 609 aa17.05■□□□□ 0.32
COL7A1-210ENST00000487017 TMEM121Q9BTD3 319 aa17.05■□□□□ 0.32
COL7A1-210ENST00000487017 TMEM120AQ9BXJ8 343 aa17.05■□□□□ 0.32
COL7A1-210ENST00000487017 RNF181Q9P0P0 153 aa17.05■□□□□ 0.32
COL7A1-210ENST00000487017 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.05■□□□□ 0.32
COL7A1-210ENST00000487017 PKP3Q9Y446 797 aa17.05■□□□□ 0.32
COL7A1-210ENST00000487017 ADGRA2Q96PE1 1338 aa17.05■□□□□ 0.32
COL7A1-210ENST00000487017 NWD1Q149M9 1564 aa17.05■□□□□ 0.32
COL7A1-210ENST00000487017 SDR42E2A6NKP2 422 aa17.05■□□□□ 0.32
COL7A1-210ENST00000487017 SOX11P35716 441 aa17.05■□□□□ 0.32
COL7A1-210ENST00000487017 TMC3Q7Z5M5 1100 aa17.05■□□□□ 0.32
COL7A1-210ENST00000487017 OTUB1Q96FW1 271 aaPredicted RBP17.05■□□□□ 0.32
COL7A1-210ENST00000487017 DUSP9Q99956 384 aaKnown RBP17.05■□□□□ 0.32
COL7A1-210ENST00000487017 GDF3Q9NR23 364 aa17.05■□□□□ 0.32
COL7A1-210ENST00000487017 DDX28Q9NUL7 540 aaKnown RBP17.05■□□□□ 0.32
COL7A1-210ENST00000487017 DEPDC5O75140 1603 aa17.05■□□□□ 0.32
COL7A1-210ENST00000487017 A0A087X0B3 334 aa17.05■□□□□ 0.32
COL7A1-210ENST00000487017 PIK3CDO00329 1044 aa17.05■□□□□ 0.32
COL7A1-210ENST00000487017 FAM200BP0CF97 657 aa17.05■□□□□ 0.32
COL7A1-210ENST00000487017 TAF6P49848 677 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms