RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 IRF2BPLQ9H1B7 796 aa15.7■□□□□ 0.1
USP4-212ENST00000486549 THAP9Q9H5L6 903 aa15.7■□□□□ 0.1
USP4-212ENST00000486549 NUMBLQ9Y6R0 609 aa15.7■□□□□ 0.1
USP4-212ENST00000486549 GREB1Q4ZG55 1949 aa15.7■□□□□ 0.1
USP4-212ENST00000486549 ATP8B3O60423 1300 aa15.69■□□□□ 0.1
USP4-212ENST00000486549 DENND4CQ5VZ89 1909 aa15.69■□□□□ 0.1
USP4-212ENST00000486549 F8VP50 259 aa15.69■□□□□ 0.1
USP4-212ENST00000486549 TRIM66O15016 1216 aa15.69■□□□□ 0.1
USP4-212ENST00000486549 CILPO75339 1184 aa15.69■□□□□ 0.1
USP4-212ENST00000486549 FGF19O95750 216 aa15.69■□□□□ 0.1
USP4-212ENST00000486549 CSH1P0DML2 217 aa15.69■□□□□ 0.1
USP4-212ENST00000486549 CSH2P0DML3 217 aa15.69■□□□□ 0.1
USP4-212ENST00000486549 ADORA2BP29275 332 aa15.69■□□□□ 0.1
USP4-212ENST00000486549 CACNA2D1P54289 1103 aa15.69■□□□□ 0.1
USP4-212ENST00000486549 CYP4F8P98187 520 aa15.69■□□□□ 0.1
USP4-212ENST00000486549 CUL2Q13617 745 aa15.69■□□□□ 0.1
USP4-212ENST00000486549 STXBP5Q5T5C0 1151 aa15.69■□□□□ 0.1
USP4-212ENST00000486549 C11orf57Q6ZUT1 292 aaPredicted RBP15.69■□□□□ 0.1
USP4-212ENST00000486549 GAREM2Q75VX8 874 aa15.69■□□□□ 0.1
USP4-212ENST00000486549 MTSS1LQ765P7 747 aa15.69■□□□□ 0.1
USP4-212ENST00000486549 FAM114A1Q8IWE2 563 aa15.69■□□□□ 0.1
USP4-212ENST00000486549 C12orf29Q8N999 325 aa15.69■□□□□ 0.1
USP4-212ENST00000486549 NT5C1BQ96P26 610 aa15.69■□□□□ 0.1
USP4-212ENST00000486549 KXD1Q9BQD3 176 aa15.69■□□□□ 0.1
USP4-212ENST00000486549 KRT82Q9NSB4 513 aa15.69■□□□□ 0.1
USP4-212ENST00000486549 CISHQ9NSE2 258 aa15.69■□□□□ 0.1
USP4-212ENST00000486549 ANO10Q9NW15 660 aa15.69■□□□□ 0.1
USP4-212ENST00000486549 GDE1Q9NZC3 331 aa15.69■□□□□ 0.1
USP4-212ENST00000486549 TRIOO75962 3097 aa15.68■□□□□ 0.1
USP4-212ENST00000486549 P4HA2O15460 535 aa15.68■□□□□ 0.1
USP4-212ENST00000486549 MICAL2O94851 1124 aa15.68■□□□□ 0.1
USP4-212ENST00000486549 HMGA1P17096 107 aaKnown RBP15.68■□□□□ 0.1
USP4-212ENST00000486549 CDC25CP30307 473 aa15.68■□□□□ 0.1
USP4-212ENST00000486549 IFRD2Q12894 506 aaPredicted RBP15.68■□□□□ 0.1
USP4-212ENST00000486549 TDGQ13569 410 aa15.68■□□□□ 0.1
USP4-212ENST00000486549 ARHGAP15Q53QZ3 475 aa15.68■□□□□ 0.1
USP4-212ENST00000486549 GPR158Q5T848 1215 aa15.68■□□□□ 0.1
USP4-212ENST00000486549 CRYBG2Q8N1P7 616 aa15.68■□□□□ 0.1
USP4-212ENST00000486549 PPM1KQ8N3J5 372 aa15.68■□□□□ 0.1
USP4-212ENST00000486549 SLC2A14Q8TDB8 520 aa15.68■□□□□ 0.1
USP4-212ENST00000486549 WHAMMQ8TF30 809 aa15.68■□□□□ 0.1
USP4-212ENST00000486549 SMARCD1Q96GM5 515 aa15.68■□□□□ 0.1
USP4-212ENST00000486549 ZSWIM3Q96MP5 696 aa15.68■□□□□ 0.1
USP4-212ENST00000486549 RPP25Q9BUL9 199 aaKnown RBP15.68■□□□□ 0.1
USP4-212ENST00000486549 DNAI2Q9GZS0 605 aa15.68■□□□□ 0.1
USP4-212ENST00000486549 IL21Q9HBE4 155 aa15.68■□□□□ 0.1
USP4-212ENST00000486549 TMEM30AQ9NV96 361 aa15.68■□□□□ 0.1
USP4-212ENST00000486549 GCNT4Q9P109 453 aa15.68■□□□□ 0.1
USP4-212ENST00000486549 ZNF638Q14966 1978 aaKnown RBP15.67■□□□□ 0.1
USP4-212ENST00000486549 ANHXE9PGG2 379 aa15.67■□□□□ 0.1
USP4-212ENST00000486549 PMM2O15305 246 aa15.67■□□□□ 0.1
USP4-212ENST00000486549 NARSO43776 548 aaKnown RBP15.67■□□□□ 0.1
USP4-212ENST00000486549 AP1G2O75843 785 aa15.67■□□□□ 0.1
USP4-212ENST00000486549 NOL4O94818 638 aa15.67■□□□□ 0.1
USP4-212ENST00000486549 PRKCSHP14314 528 aaPredicted RBP15.67■□□□□ 0.1
USP4-212ENST00000486549 YWHAEP62258 255 aaKnown RBP15.67■□□□□ 0.1
USP4-212ENST00000486549 CT47A1Q5JQC4 288 aaPredicted RBP15.67■□□□□ 0.1
USP4-212ENST00000486549 FAM78AQ5JUQ0 283 aa15.67■□□□□ 0.1
USP4-212ENST00000486549 DENND5BQ6ZUT9 1274 aa15.67■□□□□ 0.1
USP4-212ENST00000486549 PAQR9Q6ZVX9 377 aa15.67■□□□□ 0.1
USP4-212ENST00000486549 GPIHBP1Q8IV16 184 aa15.67■□□□□ 0.1
USP4-212ENST00000486549 FUKQ8N0W3 1084 aa15.67■□□□□ 0.1
USP4-212ENST00000486549 TTC39CQ8N584 583 aa15.67■□□□□ 0.1
USP4-212ENST00000486549 EHBP1Q8NDI1 1231 aa15.67■□□□□ 0.1
USP4-212ENST00000486549 ZSCAN18Q8TBC5 510 aaPredicted RBP15.67■□□□□ 0.1
USP4-212ENST00000486549 ASIC4Q96FT7 647 aa15.67■□□□□ 0.1
USP4-212ENST00000486549 FAXDC2Q96IV6 333 aa15.67■□□□□ 0.1
USP4-212ENST00000486549 C8orf48Q96LL4 319 aa15.67■□□□□ 0.1
USP4-212ENST00000486549 CRACR2AQ9BSW2 395 aa15.67■□□□□ 0.1
USP4-212ENST00000486549 INTS2Q9H0H0 1204 aaKnown RBP15.67■□□□□ 0.1
USP4-212ENST00000486549 SAMSN1Q9NSI8 373 aaKnown RBP15.67■□□□□ 0.1
USP4-212ENST00000486549 UXTQ9UBK9 157 aaPredicted RBP15.67■□□□□ 0.1
USP4-212ENST00000486549 NFE2L3Q9Y4A8 694 aa15.67■□□□□ 0.1
USP4-212ENST00000486549 NUP210Q8TEM1 1887 aaPredicted RBP15.67■□□□□ 0.1
USP4-212ENST00000486549 KCNJ18B7U540 433 aa15.66■□□□□ 0.1
USP4-212ENST00000486549 PES1O00541 588 aaKnown RBP15.66■□□□□ 0.1
USP4-212ENST00000486549 TBXAS1P24557 533 aaPredicted RBP15.66■□□□□ 0.1
USP4-212ENST00000486549 USP46P62068 366 aa15.66■□□□□ 0.1
USP4-212ENST00000486549 TYRO3Q06418 890 aa15.66■□□□□ 0.1
USP4-212ENST00000486549 KCNJ12Q14500 433 aa15.66■□□□□ 0.1
USP4-212ENST00000486549 MAN2A1Q16706 1144 aa15.66■□□□□ 0.1
USP4-212ENST00000486549 TANGO2Q6ICL3 276 aa15.66■□□□□ 0.1
USP4-212ENST00000486549 RRAGAQ7L523 313 aa15.66■□□□□ 0.1
USP4-212ENST00000486549 ARHGEF19Q8IW93 802 aa15.66■□□□□ 0.1
USP4-212ENST00000486549 SLC44A3Q8N4M1 653 aa15.66■□□□□ 0.1
USP4-212ENST00000486549 SLC4A11Q8NBS3 891 aa15.66■□□□□ 0.1
USP4-212ENST00000486549 LMO3Q8TAP4 145 aa15.66■□□□□ 0.1
USP4-212ENST00000486549 ENOX1Q8TC92 643 aaKnown RBP15.66■□□□□ 0.1
USP4-212ENST00000486549 KAT5Q92993 513 aa15.66■□□□□ 0.1
USP4-212ENST00000486549 JAKMIP2Q96AA8 810 aa15.66■□□□□ 0.1
USP4-212ENST00000486549 CYFIP2Q96F07 1278 aa15.66■□□□□ 0.1
USP4-212ENST00000486549 TRMT2BQ96GJ1 504 aaKnown RBP15.66■□□□□ 0.1
USP4-212ENST00000486549 SPATA17Q96L03 361 aa15.66■□□□□ 0.1
USP4-212ENST00000486549 HEXIM2Q96MH2 286 aaKnown RBP15.66■□□□□ 0.1
USP4-212ENST00000486549 ASB16Q96NS5 453 aa15.66■□□□□ 0.1
USP4-212ENST00000486549 KCNK16Q96T55 309 aa15.66■□□□□ 0.1
USP4-212ENST00000486549 DMAP1Q9NPF5 467 aaPredicted RBP15.66■□□□□ 0.1
USP4-212ENST00000486549 DUSP12Q9UNI6 340 aa15.66■□□□□ 0.1
USP4-212ENST00000486549 PATJQ8NI35 1801 aa15.66■□□□□ 0.1
USP4-212ENST00000486549 MYO16Q9Y6X6 1858 aa15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms