RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 TMEM60Q9H2L4 133 aa4.9□□□□□ -1.63
VPS41-213ENST00000485955 DUSP22Q9NRW4 184 aa4.9□□□□□ -1.63
VPS41-213ENST00000485955 TBC1D30Q9Y2I9 924 aa4.9□□□□□ -1.63
VPS41-213ENST00000485955 MYO1FO00160 1098 aa4.89□□□□□ -1.63
VPS41-213ENST00000485955 TBX3O15119 743 aa4.89□□□□□ -1.63
VPS41-213ENST00000485955 PHGDHO43175 533 aaKnown RBP4.89□□□□□ -1.63
VPS41-213ENST00000485955 PRKCGP05129 697 aa4.89□□□□□ -1.63
VPS41-213ENST00000485955 CYP2C9P11712 490 aa4.89□□□□□ -1.63
VPS41-213ENST00000485955 ENGP17813 658 aa4.89□□□□□ -1.63
VPS41-213ENST00000485955 KCNA3P22001 575 aa4.89□□□□□ -1.63
VPS41-213ENST00000485955 ABCG1P45844 678 aa4.89□□□□□ -1.63
VPS41-213ENST00000485955 PDE1AP54750 535 aa4.89□□□□□ -1.63
VPS41-213ENST00000485955 WNT3P56703 355 aa4.89□□□□□ -1.63
VPS41-213ENST00000485955 EEFSECP57772 596 aaKnown RBP4.89□□□□□ -1.63
VPS41-213ENST00000485955 SLC13A2Q13183 592 aa4.89□□□□□ -1.63
VPS41-213ENST00000485955 PPP2R5AQ15172 486 aa4.89□□□□□ -1.63
VPS41-213ENST00000485955 PTCHD3Q3KNS1 767 aa4.89□□□□□ -1.63
VPS41-213ENST00000485955 PLA1AQ53H76 456 aa4.89□□□□□ -1.63
VPS41-213ENST00000485955 DEPDC1Q5TB30 811 aa4.89□□□□□ -1.63
VPS41-213ENST00000485955 LMBRD2Q68DH5 695 aaPredicted RBP4.89□□□□□ -1.63
VPS41-213ENST00000485955 ANKRD16Q6P6B7 361 aa4.89□□□□□ -1.63
VPS41-213ENST00000485955 ZNF783Q6ZMS7 281 aa4.89□□□□□ -1.63
VPS41-213ENST00000485955 ZNF782Q6ZMW2 699 aaPredicted RBP4.89□□□□□ -1.63
VPS41-213ENST00000485955 GAS2L3Q86XJ1 694 aa4.89□□□□□ -1.63
VPS41-213ENST00000485955 OR6B3Q8NGW1 331 aa4.89□□□□□ -1.63
VPS41-213ENST00000485955 ANKS1AQ92625 1134 aa4.89□□□□□ -1.63
VPS41-213ENST00000485955 MACROD1Q9BQ69 325 aa4.89□□□□□ -1.63
VPS41-213ENST00000485955 C22orf23Q9BZE7 217 aa4.89□□□□□ -1.63
VPS41-213ENST00000485955 MS4A7Q9GZW8 240 aaPredicted RBP4.89□□□□□ -1.63
VPS41-213ENST00000485955 GLOD4Q9HC38 313 aa4.89□□□□□ -1.63
VPS41-213ENST00000485955 CPNE7Q9UBL6 633 aa4.89□□□□□ -1.63
VPS41-213ENST00000485955 L1RE1Q9UN81 338 aa4.89□□□□□ -1.63
VPS41-213ENST00000485955 SH2B3Q9UQQ2 575 aa4.89□□□□□ -1.63
VPS41-213ENST00000485955 TBC1D4O60343 1298 aa4.88□□□□□ -1.63
VPS41-213ENST00000485955 VNN1O95497 513 aa4.88□□□□□ -1.63
VPS41-213ENST00000485955 ONECUT2O95948 504 aa4.88□□□□□ -1.63
VPS41-213ENST00000485955 S100BP04271 92 aaPredicted RBP4.88□□□□□ -1.63
VPS41-213ENST00000485955 EN2P19622 333 aaPredicted RBP4.88□□□□□ -1.63
VPS41-213ENST00000485955 LRPAP1P30533 357 aa4.88□□□□□ -1.63
VPS41-213ENST00000485955 SLC7A1P30825 629 aa4.88□□□□□ -1.63
VPS41-213ENST00000485955 KRT17Q04695 432 aa4.88□□□□□ -1.63
VPS41-213ENST00000485955 MINDY4Q4G0A6 757 aa4.88□□□□□ -1.63
VPS41-213ENST00000485955 AARS2Q5JTZ9 985 aaKnown RBP4.88□□□□□ -1.63
VPS41-213ENST00000485955 PCID2Q5JVF3 399 aa4.88□□□□□ -1.63
VPS41-213ENST00000485955 CEP85Q6P2H3 762 aa4.88□□□□□ -1.63
VPS41-213ENST00000485955 APOA5Q6Q788 366 aa4.88□□□□□ -1.63
VPS41-213ENST00000485955 ZDHHC24Q6UX98 284 aa4.88□□□□□ -1.63
VPS41-213ENST00000485955 PTF1AQ7RTS3 328 aa4.88□□□□□ -1.63
VPS41-213ENST00000485955 TCEAL8Q8IYN2 117 aa4.88□□□□□ -1.63
VPS41-213ENST00000485955 MPP5Q8N3R9 675 aa4.88□□□□□ -1.63
VPS41-213ENST00000485955 LRRC71Q8N4P6 559 aa4.88□□□□□ -1.63
VPS41-213ENST00000485955 MAGEB6Q8N7X4 407 aa4.88□□□□□ -1.63
VPS41-213ENST00000485955 FANCBQ8NB91 859 aa4.88□□□□□ -1.63
VPS41-213ENST00000485955 SEMA6DQ8NFY4 1073 aa4.88□□□□□ -1.63
VPS41-213ENST00000485955 XAGE5Q8WWM1 108 aa4.88□□□□□ -1.63
VPS41-213ENST00000485955 JDP2Q8WYK2 163 aa4.88□□□□□ -1.63
VPS41-213ENST00000485955 STK32BQ9NY57 414 aa4.88□□□□□ -1.63
VPS41-213ENST00000485955 SH3BP4Q9P0V3 963 aa4.88□□□□□ -1.63
VPS41-213ENST00000485955 DDX20Q9UHI6 824 aaKnown RBP4.88□□□□□ -1.63
VPS41-213ENST00000485955 G3BP2Q9UN86 482 aaKnown RBP4.88□□□□□ -1.63
VPS41-213ENST00000485955 DNAJC9-AS1A6NH13 148 aa4.87□□□□□ -1.63
VPS41-213ENST00000485955 CAPN8A6NHC0 703 aa4.87□□□□□ -1.63
VPS41-213ENST00000485955 QSOX1O00391 747 aa4.87□□□□□ -1.63
VPS41-213ENST00000485955 JTBO76095 146 aa4.87□□□□□ -1.63
VPS41-213ENST00000485955 CELA2AP08217 269 aa4.87□□□□□ -1.63
VPS41-213ENST00000485955 XRCC6P12956 609 aaKnown RBP eCLIP4.87□□□□□ -1.63
VPS41-213ENST00000485955 SUMO3P55854 103 aaPredicted RBP4.87□□□□□ -1.63
VPS41-213ENST00000485955 CYP4F2P78329 520 aa4.87□□□□□ -1.63
VPS41-213ENST00000485955 CNN3Q15417 329 aaKnown RBP4.87□□□□□ -1.63
VPS41-213ENST00000485955 PROSER3Q2NL68 480 aa4.87□□□□□ -1.63
VPS41-213ENST00000485955 MGAT5BQ3V5L5 792 aa4.87□□□□□ -1.63
VPS41-213ENST00000485955 ARHGAP29Q52LW3 1261 aa4.87□□□□□ -1.63
VPS41-213ENST00000485955 DCAF12L1Q5VU92 463 aa4.87□□□□□ -1.63
VPS41-213ENST00000485955 NXNQ6DKJ4 435 aa4.87□□□□□ -1.63
VPS41-213ENST00000485955 NAPRTQ6XQN6 538 aa4.87□□□□□ -1.63
VPS41-213ENST00000485955 PARS2Q7L3T8 475 aaKnown RBP4.87□□□□□ -1.63
VPS41-213ENST00000485955 SLC29A4Q7RTT9 530 aa4.87□□□□□ -1.63
VPS41-213ENST00000485955 WDR53Q7Z5U6 358 aaPredicted RBP4.87□□□□□ -1.63
VPS41-213ENST00000485955 MICU3Q86XE3 530 aa4.87□□□□□ -1.63
VPS41-213ENST00000485955 SLC15A3Q8IY34 581 aa4.87□□□□□ -1.63
VPS41-213ENST00000485955 ABRAQ8N0Z2 381 aa4.87□□□□□ -1.63
VPS41-213ENST00000485955 OR56A3Q8NH54 315 aa4.87□□□□□ -1.63
VPS41-213ENST00000485955 TMEM171Q8WVE6 324 aa4.87□□□□□ -1.63
VPS41-213ENST00000485955 TBC1D5Q92609 795 aa4.87□□□□□ -1.63
VPS41-213ENST00000485955 PPP2R3CQ969Q6 453 aa4.87□□□□□ -1.63
VPS41-213ENST00000485955 GBA2Q9HCG7 927 aaPredicted RBP4.87□□□□□ -1.63
VPS41-213ENST00000485955 SNX14Q9Y5W7 946 aa4.87□□□□□ -1.63
VPS41-213ENST00000485955 CFAP69A5D8W1 941 aa4.86□□□□□ -1.63
VPS41-213ENST00000485955 LINC01548A6NM66 108 aa4.86□□□□□ -1.63
VPS41-213ENST00000485955 TISP43B9A030 160 aa4.86□□□□□ -1.63
VPS41-213ENST00000485955 TSPAN6O43657 245 aa4.86□□□□□ -1.63
VPS41-213ENST00000485955 PDE8BO95263 885 aa4.86□□□□□ -1.63
VPS41-213ENST00000485955 LMO1P25800 156 aa4.86□□□□□ -1.63
VPS41-213ENST00000485955 PDE6CP51160 858 aa4.86□□□□□ -1.63
VPS41-213ENST00000485955 MLC1Q15049 377 aa4.86□□□□□ -1.63
VPS41-213ENST00000485955 SLC9A4Q6AI14 798 aa4.86□□□□□ -1.63
VPS41-213ENST00000485955 SUMO4Q6EEV6 95 aa4.86□□□□□ -1.63
VPS41-213ENST00000485955 Q6ZWC4 215 aa4.86□□□□□ -1.63
VPS41-213ENST00000485955 BPIFB1Q8TDL5 484 aa4.86□□□□□ -1.63
VPS41-213ENST00000485955 OSCP1Q8WVF1 389 aa4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms