RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 CEBPBP17676 345 aa18.15■□□□□ 0.5
VIM-205ENST00000485947 TRIM21P19474 475 aaKnown RBP18.15■□□□□ 0.5
VIM-205ENST00000485947 WNT7BP56706 349 aa18.15■□□□□ 0.5
VIM-205ENST00000485947 STARD6P59095 220 aa18.15■□□□□ 0.5
VIM-205ENST00000485947 CBWD6Q4V339 395 aa18.15■□□□□ 0.5
VIM-205ENST00000485947 CBWD3Q5JTY5 395 aa18.15■□□□□ 0.5
VIM-205ENST00000485947 CBWD5Q5RIA9 395 aa18.15■□□□□ 0.5
VIM-205ENST00000485947 CWF19L1Q69YN2 538 aaKnown RBP18.15■□□□□ 0.5
VIM-205ENST00000485947 CNGA4Q8IV77 575 aa18.15■□□□□ 0.5
VIM-205ENST00000485947 TMEM105Q8N8V8 129 aa18.15■□□□□ 0.5
VIM-205ENST00000485947 ATAD1Q8NBU5 361 aa18.15■□□□□ 0.5
VIM-205ENST00000485947 FLCNQ8NFG4 579 aa18.15■□□□□ 0.5
VIM-205ENST00000485947 NEK11Q8NG66 645 aa18.15■□□□□ 0.5
VIM-205ENST00000485947 SMARCD2Q92925 531 aa18.15■□□□□ 0.5
VIM-205ENST00000485947 TRIM44Q96DX7 344 aaPredicted RBP18.15■□□□□ 0.5
VIM-205ENST00000485947 MCRS1Q96EZ8 462 aa18.15■□□□□ 0.5
VIM-205ENST00000485947 PGLYRP2Q96PD5 576 aa18.15■□□□□ 0.5
VIM-205ENST00000485947 LRRC3Q9BY71 257 aa18.15■□□□□ 0.5
VIM-205ENST00000485947 TTYH3Q9C0H2 523 aa18.15■□□□□ 0.5
VIM-205ENST00000485947 MTMR12Q9C0I1 747 aa18.15■□□□□ 0.5
VIM-205ENST00000485947 MMRN2Q9H8L6 949 aa18.15■□□□□ 0.5
VIM-205ENST00000485947 GCNT4Q9P109 453 aa18.15■□□□□ 0.5
VIM-205ENST00000485947 COQ4Q9Y3A0 265 aa18.15■□□□□ 0.5
VIM-205ENST00000485947 NOTCH4Q99466 2003 aa18.15■□□□□ 0.5
VIM-205ENST00000485947 KRBA1A5PL33 1030 aa18.14■□□□□ 0.49
VIM-205ENST00000485947 SOBPA7XYQ1 873 aa18.14■□□□□ 0.49
VIM-205ENST00000485947 AKR1B15C9JRZ8 316 aaPredicted RBP18.14■□□□□ 0.49
VIM-205ENST00000485947 GYPCP04921 128 aa18.14■□□□□ 0.49
VIM-205ENST00000485947 KRT19P08727 400 aa18.14■□□□□ 0.49
VIM-205ENST00000485947 TNNI1P19237 187 aa18.14■□□□□ 0.49
VIM-205ENST00000485947 RFX1P22670 979 aa18.14■□□□□ 0.49
VIM-205ENST00000485947 PCSK1P29120 753 aa18.14■□□□□ 0.49
VIM-205ENST00000485947 WEE1P30291 646 aa18.14■□□□□ 0.49
VIM-205ENST00000485947 GCLMP48507 274 aa18.14■□□□□ 0.49
VIM-205ENST00000485947 GPC5P78333 572 aa18.14■□□□□ 0.49
VIM-205ENST00000485947 SLC39A12Q504Y0 691 aa18.14■□□□□ 0.49
VIM-205ENST00000485947 LIMS2Q7Z4I7 341 aa18.14■□□□□ 0.49
VIM-205ENST00000485947 DNAJB7Q7Z6W7 309 aaPredicted RBP18.14■□□□□ 0.49
VIM-205ENST00000485947 PDCL2Q8N4E4 241 aa18.14■□□□□ 0.49
VIM-205ENST00000485947 DEPDC1BQ8WUY9 529 aa18.14■□□□□ 0.49
VIM-205ENST00000485947 ING5Q8WYH8 240 aa18.14■□□□□ 0.49
VIM-205ENST00000485947 DNASE1L2Q92874 299 aa18.14■□□□□ 0.49
VIM-205ENST00000485947 ASB16Q96NS5 453 aa18.14■□□□□ 0.49
VIM-205ENST00000485947 NELL2Q99435 816 aa18.14■□□□□ 0.49
VIM-205ENST00000485947 RPP25Q9BUL9 199 aaKnown RBP18.14■□□□□ 0.49
VIM-205ENST00000485947 LSM14BQ9BX40 385 aaKnown RBP18.14■□□□□ 0.49
VIM-205ENST00000485947 OSBPL6Q9BZF3 934 aa18.14■□□□□ 0.49
VIM-205ENST00000485947 TRPV5Q9NQA5 729 aa18.14■□□□□ 0.49
VIM-205ENST00000485947 SIX4Q9UIU6 781 aa18.14■□□□□ 0.49
VIM-205ENST00000485947 CAPN11Q9UMQ6 739 aa18.14■□□□□ 0.49
VIM-205ENST00000485947 PCDHB5Q9Y5E4 795 aa18.14■□□□□ 0.49
VIM-205ENST00000485947 SCN1AP35498 2009 aa18.14■□□□□ 0.49
VIM-205ENST00000485947 DOCK6Q96HP0 2047 aa18.13■□□□□ 0.49
VIM-205ENST00000485947 GABRDO14764 452 aa18.13■□□□□ 0.49
VIM-205ENST00000485947 MYL4P12829 197 aa18.13■□□□□ 0.49
VIM-205ENST00000485947 PON1P27169 355 aa18.13■□□□□ 0.49
VIM-205ENST00000485947 CCR2P41597 374 aa18.13■□□□□ 0.49
VIM-205ENST00000485947 SV2AQ7L0J3 742 aa18.13■□□□□ 0.49
VIM-205ENST00000485947 TMC8Q8IU68 726 aa18.13■□□□□ 0.49
VIM-205ENST00000485947 TCEAL4Q96EI5 215 aa18.13■□□□□ 0.49
VIM-205ENST00000485947 FUBP3Q96I24 572 aaKnown RBP eCLIP18.13■□□□□ 0.49
VIM-205ENST00000485947 HPDLQ96IR7 371 aa18.13■□□□□ 0.49
VIM-205ENST00000485947 CEP295NLQ96MC4 621 aa18.13■□□□□ 0.49
VIM-205ENST00000485947 CRACR2AQ9BSW2 395 aa18.13■□□□□ 0.49
VIM-205ENST00000485947 CRISPLD1Q9H336 500 aa18.13■□□□□ 0.49
VIM-205ENST00000485947 L1RE1Q9UN81 338 aa18.13■□□□□ 0.49
VIM-205ENST00000485947 SNX9Q9Y5X1 595 aa18.13■□□□□ 0.49
VIM-205ENST00000485947 NRDCO43847 1150 aa18.12■□□□□ 0.49
VIM-205ENST00000485947 MFAP3LO75121 409 aa18.12■□□□□ 0.49
VIM-205ENST00000485947 MOSPD3O75425 235 aa18.12■□□□□ 0.49
VIM-205ENST00000485947 STAU1O95793 577 aaKnown RBP18.12■□□□□ 0.49
VIM-205ENST00000485947 HAPLN1P10915 354 aaPredicted RBP18.12■□□□□ 0.49
VIM-205ENST00000485947 CDC25CP30307 473 aa18.12■□□□□ 0.49
VIM-205ENST00000485947 CASP14P31944 242 aa18.12■□□□□ 0.49
VIM-205ENST00000485947 KLK7P49862 253 aa18.12■□□□□ 0.49
VIM-205ENST00000485947 MLLT6P55198 1093 aaPredicted RBP18.12■□□□□ 0.49
VIM-205ENST00000485947 ZBED6P86452 979 aa18.12■□□□□ 0.49
VIM-205ENST00000485947 MAPRE1Q15691 268 aaKnown RBP18.12■□□□□ 0.49
VIM-205ENST00000485947 MGAT5BQ3V5L5 792 aa18.12■□□□□ 0.49
VIM-205ENST00000485947 ZACNQ401N2 412 aa18.12■□□□□ 0.49
VIM-205ENST00000485947 ARHGAP15Q53QZ3 475 aa18.12■□□□□ 0.49
VIM-205ENST00000485947 FAM78AQ5JUQ0 283 aa18.12■□□□□ 0.49
VIM-205ENST00000485947 TRIM65Q6PJ69 517 aa18.12■□□□□ 0.49
VIM-205ENST00000485947 TRAPPC11Q7Z392 1133 aa18.12■□□□□ 0.49
VIM-205ENST00000485947 CCDC105Q8IYK2 499 aa18.12■□□□□ 0.49
VIM-205ENST00000485947 HS6ST3Q8IZP7 471 aa18.12■□□□□ 0.49
VIM-205ENST00000485947 EHBP1Q8NDI1 1231 aa18.12■□□□□ 0.49
VIM-205ENST00000485947 FBXL13Q8NEE6 735 aa18.12■□□□□ 0.49
VIM-205ENST00000485947 ZNF397Q8NF99 534 aaPredicted RBP18.12■□□□□ 0.49
VIM-205ENST00000485947 IRF7Q92985 503 aa18.12■□□□□ 0.49
VIM-205ENST00000485947 TMEM209Q96SK2 561 aa18.12■□□□□ 0.49
VIM-205ENST00000485947 KXD1Q9BQD3 176 aa18.12■□□□□ 0.49
VIM-205ENST00000485947 DDX23Q9BUQ8 820 aaKnown RBP18.12■□□□□ 0.49
VIM-205ENST00000485947 INTS2Q9H0H0 1204 aaKnown RBP18.12■□□□□ 0.49
VIM-205ENST00000485947 TBC1D17Q9HA65 648 aa18.12■□□□□ 0.49
VIM-205ENST00000485947 FAM207AQ9NSI2 230 aaPredicted RBP18.12■□□□□ 0.49
VIM-205ENST00000485947 DDX43Q9NXZ2 648 aaKnown RBP18.12■□□□□ 0.49
VIM-205ENST00000485947 OBP2AQ9NY56 170 aa18.12■□□□□ 0.49
VIM-205ENST00000485947 CA14Q9ULX7 337 aa18.12■□□□□ 0.49
VIM-205ENST00000485947 SLC27A5Q9Y2P5 690 aa18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms