RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 BPHLQ86WA6 291 aaPredicted RBP8.09□□□□□ -1.11
USP4-211ENST00000485450 C7orf61Q8IZ16 206 aa8.09□□□□□ -1.11
USP4-211ENST00000485450 ATXN2LQ8WWM7 1075 aaKnown RBP8.09□□□□□ -1.11
USP4-211ENST00000485450 CTNNBL1Q8WYA6 563 aaPredicted RBP8.09□□□□□ -1.11
USP4-211ENST00000485450 EPSTI1Q96J88 318 aa8.09□□□□□ -1.11
USP4-211ENST00000485450 TLR10Q9BXR5 811 aa8.09□□□□□ -1.11
USP4-211ENST00000485450 TRIM9Q9C026 710 aa8.09□□□□□ -1.11
USP4-211ENST00000485450 TTYH3Q9C0H2 523 aa8.09□□□□□ -1.11
USP4-211ENST00000485450 VCX3BQ9H321 246 aa8.09□□□□□ -1.11
USP4-211ENST00000485450 THAP9Q9H5L6 903 aa8.09□□□□□ -1.11
USP4-211ENST00000485450 AGO3Q9H9G7 860 aaKnown RBP8.09□□□□□ -1.11
USP4-211ENST00000485450 RNPEPL1Q9HAU8 725 aa8.09□□□□□ -1.11
USP4-211ENST00000485450 VCX3AQ9NNX9 186 aa8.09□□□□□ -1.11
USP4-211ENST00000485450 DMAC2Q9NW81 257 aa8.09□□□□□ -1.11
USP4-211ENST00000485450 ZNHIT6Q9NWK9 470 aaKnown RBP8.09□□□□□ -1.11
USP4-211ENST00000485450 STK39Q9UEW8 545 aa8.09□□□□□ -1.11
USP4-211ENST00000485450 TCEAL9Q9UHQ7 104 aa8.09□□□□□ -1.11
USP4-211ENST00000485450 ZNF180Q9UJW8 692 aa8.09□□□□□ -1.11
USP4-211ENST00000485450 DNM3Q9UQ16 869 aa8.09□□□□□ -1.11
USP4-211ENST00000485450 TRIP11Q15643 1979 aa8.09□□□□□ -1.11
USP4-211ENST00000485450 A0A0U1RQF3 1178 aa8.09□□□□□ -1.11
USP4-211ENST00000485450 SIGLEC16A6NMB1 481 aa8.09□□□□□ -1.11
USP4-211ENST00000485450 LGALS16A8MUM7 142 aa8.09□□□□□ -1.11
USP4-211ENST00000485450 ENPP3O14638 875 aa8.09□□□□□ -1.11
USP4-211ENST00000485450 KIAA0391O15091 583 aaKnown RBP8.09□□□□□ -1.11
USP4-211ENST00000485450 GPR182O15218 404 aa8.09□□□□□ -1.11
USP4-211ENST00000485450 PMM2O15305 246 aa8.09□□□□□ -1.11
USP4-211ENST00000485450 MAGEB3O15480 346 aa8.09□□□□□ -1.11
USP4-211ENST00000485450 MOCS3O95396 460 aa8.09□□□□□ -1.11
USP4-211ENST00000485450 POU2F2P09086 479 aa8.09□□□□□ -1.11
USP4-211ENST00000485450 SKIP12755 728 aa8.09□□□□□ -1.11
USP4-211ENST00000485450 ENDOUP21128 410 aaKnown RBP8.09□□□□□ -1.11
USP4-211ENST00000485450 CYP27A1Q02318 531 aa8.09□□□□□ -1.11
USP4-211ENST00000485450 CUL1Q13616 776 aa8.09□□□□□ -1.11
USP4-211ENST00000485450 TRADDQ15628 312 aa8.09□□□□□ -1.11
USP4-211ENST00000485450 ZBTB6Q15916 424 aa8.09□□□□□ -1.11
USP4-211ENST00000485450 CNPY1Q3B7I2 92 aa8.09□□□□□ -1.11
USP4-211ENST00000485450 ZC2HC1CQ53FD0 456 aaPredicted RBP8.09□□□□□ -1.11
USP4-211ENST00000485450 SMYD4Q8IYR2 804 aaPredicted RBP8.09□□□□□ -1.11
USP4-211ENST00000485450 PTPRN2Q92932 1015 aa8.09□□□□□ -1.11
USP4-211ENST00000485450 INO80BQ9C086 356 aaPredicted RBP8.09□□□□□ -1.11
USP4-211ENST00000485450 CIDEBQ9UHD4 219 aa8.09□□□□□ -1.11
USP4-211ENST00000485450 FBXO9Q9UK97 447 aaPredicted RBP8.09□□□□□ -1.11
USP4-211ENST00000485450 DERAQ9Y315 318 aa8.09□□□□□ -1.11
USP4-211ENST00000485450 NOC2LQ9Y3T9 749 aaKnown RBP8.09□□□□□ -1.11
USP4-211ENST00000485450 MYMKA6NI61 221 aa8.09□□□□□ -1.11
USP4-211ENST00000485450 BHMG1C9JSJ3 638 aaPredicted RBP8.09□□□□□ -1.11
USP4-211ENST00000485450 ACKR2O00590 384 aa8.09□□□□□ -1.11
USP4-211ENST00000485450 SART1O43290 800 aaKnown RBP8.09□□□□□ -1.11
USP4-211ENST00000485450 COL6A2P12110 1019 aa8.09□□□□□ -1.11
USP4-211ENST00000485450 PPARDQ03181 441 aa8.09□□□□□ -1.11
USP4-211ENST00000485450 PLA2G4FQ68DD2 849 aa8.09□□□□□ -1.11
USP4-211ENST00000485450 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP8.09□□□□□ -1.11
USP4-211ENST00000485450 LRRC34Q8IZ02 419 aa8.09□□□□□ -1.11
USP4-211ENST00000485450 PAGE5Q96GU1 130 aa8.09□□□□□ -1.11
USP4-211ENST00000485450 QPCTLQ9NXS2 382 aa8.09□□□□□ -1.11
USP4-211ENST00000485450 LZTS1Q9Y250 596 aa8.09□□□□□ -1.11
USP4-211ENST00000485450 CEP104O60308 925 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 CCT8P50990 548 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 EMP3P54852 163 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 DSC1Q08554 894 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 SPA17Q15506 151 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 KYAT1Q16773 422 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 SLC39A4Q6P5W5 647 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 UNC13DQ70J99 1090 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 ENDOVQ8N8Q3 282 aaKnown RBP8.08□□□□□ -1.12
USP4-211ENST00000485450 SMG8Q8ND04 991 aaKnown RBP8.08□□□□□ -1.12
USP4-211ENST00000485450 MDM1Q8TC05 714 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 DNAJB3Q8WWF6 145 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 IQCDQ96DY2 449 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 DHTKD1Q96HY7 919 aaPredicted RBP8.08□□□□□ -1.12
USP4-211ENST00000485450 EGLN2Q96KS0 407 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 CASD1Q96PB1 797 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 NR1H4Q96RI1 486 aaPredicted RBP8.08□□□□□ -1.12
USP4-211ENST00000485450 PSMB7Q99436 277 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 ELAC2Q9BQ52 826 aaKnown RBP8.08□□□□□ -1.12
USP4-211ENST00000485450 MINDY3Q9H8M7 445 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 TMEM161AQ9NX61 479 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 SUCLA2Q9P2R7 463 aaPredicted RBP8.08□□□□□ -1.12
USP4-211ENST00000485450 SCOCQ9UIL1 159 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 PAIP2BQ9ULR5 123 aaKnown RBP8.08□□□□□ -1.12
USP4-211ENST00000485450 KIAA1024Q9UPX6 916 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 STK38LQ9Y2H1 464 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 LCA5LO95447 670 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 GSTT2P0CG29 244 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 GSTT2BP0CG30 244 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 TPBGLP0DKB5 382 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 SKIV2L2P42285 1042 aaKnown RBP8.08□□□□□ -1.12
USP4-211ENST00000485450 KCNC3Q14003 757 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 LRP8Q14114 963 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 RCN1Q15293 331 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 ZNF720Q7Z2F6 126 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 CYP4X1Q8N118 509 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 ARHGAP18Q8N392 663 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 STK32AQ8WU08 396 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 TRAPPC12Q8WVT3 735 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 PRPF31Q8WWY3 499 aaKnown RBP8.08□□□□□ -1.12
USP4-211ENST00000485450 PSPC1Q8WXF1 523 aaKnown RBP8.08□□□□□ -1.12
USP4-211ENST00000485450 GLG1Q92896 1179 aa8.08□□□□□ -1.12
USP4-211ENST00000485450 BHMTQ93088 406 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms