RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 SYT13Q7L8C5 426 aa14.86□□□□□ -0.03
SQSTM1-208ENST00000485412 MON1AQ86VX9 555 aa14.86□□□□□ -0.03
SQSTM1-208ENST00000485412 CPA6Q8N4T0 437 aa14.86□□□□□ -0.03
SQSTM1-208ENST00000485412 OR5B17Q8NGF7 314 aa14.86□□□□□ -0.03
SQSTM1-208ENST00000485412 ACCSQ96QU6 501 aa14.86□□□□□ -0.03
SQSTM1-208ENST00000485412 TRPC7Q9HCX4 862 aa14.86□□□□□ -0.03
SQSTM1-208ENST00000485412 SRPRBQ9Y5M8 271 aaKnown RBP14.86□□□□□ -0.03
SQSTM1-208ENST00000485412 SNX9Q9Y5X1 595 aa14.86□□□□□ -0.03
SQSTM1-208ENST00000485412 WNT6Q9Y6F9 365 aa14.86□□□□□ -0.03
SQSTM1-208ENST00000485412 FRMD3A2A2Y4 597 aa14.85□□□□□ -0.03
SQSTM1-208ENST00000485412 BCLAF3A2AJT9 711 aaKnown RBP14.85□□□□□ -0.03
SQSTM1-208ENST00000485412 C2orf78A6NCI8 922 aa14.85□□□□□ -0.03
SQSTM1-208ENST00000485412 NOL4O94818 638 aa14.85□□□□□ -0.03
SQSTM1-208ENST00000485412 KRT19P08727 400 aa14.85□□□□□ -0.03
SQSTM1-208ENST00000485412 IDEP14735 1019 aa14.85□□□□□ -0.03
SQSTM1-208ENST00000485412 ABCD1P33897 745 aa14.85□□□□□ -0.03
SQSTM1-208ENST00000485412 GJA4P35212 333 aa14.85□□□□□ -0.03
SQSTM1-208ENST00000485412 DGKEP52429 567 aa14.85□□□□□ -0.03
SQSTM1-208ENST00000485412 PSMC1P62191 440 aaKnown RBP14.85□□□□□ -0.03
SQSTM1-208ENST00000485412 POU5F1Q01860 360 aaKnown RBP14.85□□□□□ -0.03
SQSTM1-208ENST00000485412 CUL4AQ13619 759 aa14.85□□□□□ -0.03
SQSTM1-208ENST00000485412 COL9A2Q14055 689 aaPredicted RBP14.85□□□□□ -0.03
SQSTM1-208ENST00000485412 POSTNQ15063 836 aa14.85□□□□□ -0.03
SQSTM1-208ENST00000485412 ZNF77Q15935 545 aa14.85□□□□□ -0.03
SQSTM1-208ENST00000485412 SOWAHAQ2M3V2 549 aa14.85□□□□□ -0.03
SQSTM1-208ENST00000485412 SH3PXD2AQ5TCZ1 1133 aa14.85□□□□□ -0.03
SQSTM1-208ENST00000485412 NT5DC4Q86YG4 428 aa14.85□□□□□ -0.03
SQSTM1-208ENST00000485412 ADGRF2Q8IZF7 708 aa14.85□□□□□ -0.03
SQSTM1-208ENST00000485412 CSGALNACT2Q8N6G5 542 aa14.85□□□□□ -0.03
SQSTM1-208ENST00000485412 LEO1Q8WVC0 666 aaPredicted RBP14.85□□□□□ -0.03
SQSTM1-208ENST00000485412 CD101Q93033 1021 aa14.85□□□□□ -0.03
SQSTM1-208ENST00000485412 ACBD6Q9BR61 282 aa14.85□□□□□ -0.03
SQSTM1-208ENST00000485412 TMEM9BQ9NQ34 198 aa14.85□□□□□ -0.03
SQSTM1-208ENST00000485412 SEL1LQ9UBV2 794 aa14.85□□□□□ -0.03
SQSTM1-208ENST00000485412 NME7Q9Y5B8 376 aa14.85□□□□□ -0.03
SQSTM1-208ENST00000485412 ATRXP46100 2492 aa14.85□□□□□ -0.03
SQSTM1-208ENST00000485412 ASPMQ8IZT6 3477 aa14.84□□□□□ -0.03
SQSTM1-208ENST00000485412 LNP1A1A4G5 178 aa14.84□□□□□ -0.03
SQSTM1-208ENST00000485412 GABRDO14764 452 aa14.84□□□□□ -0.03
SQSTM1-208ENST00000485412 KHNYNO15037 678 aaKnown RBP14.84□□□□□ -0.03
SQSTM1-208ENST00000485412 HUS1O60921 280 aa14.84□□□□□ -0.03
SQSTM1-208ENST00000485412 CSH1P0DML2 217 aa14.84□□□□□ -0.03
SQSTM1-208ENST00000485412 CSH2P0DML3 217 aa14.84□□□□□ -0.03
SQSTM1-208ENST00000485412 GAP43P17677 238 aa14.84□□□□□ -0.03
SQSTM1-208ENST00000485412 LMO2P25791 158 aa14.84□□□□□ -0.03
SQSTM1-208ENST00000485412 HOXD13P35453 343 aa14.84□□□□□ -0.03
SQSTM1-208ENST00000485412 PNPLA4P41247 253 aa14.84□□□□□ -0.03
SQSTM1-208ENST00000485412 IFNAR2P48551 515 aa14.84□□□□□ -0.03
SQSTM1-208ENST00000485412 ZXDBP98169 803 aa14.84□□□□□ -0.03
SQSTM1-208ENST00000485412 USP4Q13107 963 aa14.84□□□□□ -0.03
SQSTM1-208ENST00000485412 ZNF268Q14587 947 aaPredicted RBP14.84□□□□□ -0.03
SQSTM1-208ENST00000485412 MTF1Q14872 753 aa14.84□□□□□ -0.03
SQSTM1-208ENST00000485412 NFE2Q16621 373 aaPredicted RBP14.84□□□□□ -0.03
SQSTM1-208ENST00000485412 SV2BQ7L1I2 683 aa14.84□□□□□ -0.03
SQSTM1-208ENST00000485412 C11orf74Q86VG3 221 aa14.84□□□□□ -0.03
SQSTM1-208ENST00000485412 CBWD2Q8IUF1 395 aa14.84□□□□□ -0.03
SQSTM1-208ENST00000485412 SCN4BQ8IWT1 228 aa14.84□□□□□ -0.03
SQSTM1-208ENST00000485412 LRRC52Q8N7C0 313 aa14.84□□□□□ -0.03
SQSTM1-208ENST00000485412 ARL14EPQ8N8R7 260 aaPredicted RBP14.84□□□□□ -0.03
SQSTM1-208ENST00000485412 TSTD1Q8NFU3 115 aa14.84□□□□□ -0.03
SQSTM1-208ENST00000485412 KBTBD7Q8WVZ9 684 aa14.84□□□□□ -0.03
SQSTM1-208ENST00000485412 USP28Q96RU2 1077 aa14.84□□□□□ -0.03
SQSTM1-208ENST00000485412 ECT2Q9H8V3 914 aa14.84□□□□□ -0.03
SQSTM1-208ENST00000485412 OLFML3Q9NRN5 406 aa14.84□□□□□ -0.03
SQSTM1-208ENST00000485412 DUS2Q9NX74 493 aaKnown RBP14.84□□□□□ -0.03
SQSTM1-208ENST00000485412 GDAP2Q9NXN4 497 aa14.84□□□□□ -0.03
SQSTM1-208ENST00000485412 GCNT4Q9P109 453 aa14.84□□□□□ -0.03
SQSTM1-208ENST00000485412 CCDC39Q9UFE4 941 aa14.84□□□□□ -0.03
SQSTM1-208ENST00000485412 EBF1Q9UH73 591 aa14.84□□□□□ -0.03
SQSTM1-208ENST00000485412 INVSQ9Y283 1065 aa14.84□□□□□ -0.03
SQSTM1-208ENST00000485412 WDFY3Q8IZQ1 3526 aa14.83□□□□□ -0.03
SQSTM1-208ENST00000485412 SOBPA7XYQ1 873 aa14.83□□□□□ -0.04
SQSTM1-208ENST00000485412 SPINK2P20155 84 aa14.83□□□□□ -0.04
SQSTM1-208ENST00000485412 GARTP22102 1010 aa14.83□□□□□ -0.04
SQSTM1-208ENST00000485412 USP46P62068 366 aa14.83□□□□□ -0.04
SQSTM1-208ENST00000485412 EML3Q32P44 896 aa14.83□□□□□ -0.04
SQSTM1-208ENST00000485412 USP39Q53GS9 565 aaKnown RBP14.83□□□□□ -0.04
SQSTM1-208ENST00000485412 CYP2U1Q7Z449 544 aa14.83□□□□□ -0.04
SQSTM1-208ENST00000485412 SYCP3Q8IZU3 236 aa14.83□□□□□ -0.04
SQSTM1-208ENST00000485412 PDILTQ8N807 584 aa14.83□□□□□ -0.04
SQSTM1-208ENST00000485412 KDF1Q8NAX2 398 aaPredicted RBP14.83□□□□□ -0.04
SQSTM1-208ENST00000485412 CCDC26Q8TAB7 109 aa14.83□□□□□ -0.04
SQSTM1-208ENST00000485412 OSCP1Q8WVF1 389 aa14.83□□□□□ -0.04
SQSTM1-208ENST00000485412 ATP2A3Q93084 1043 aa14.83□□□□□ -0.04
SQSTM1-208ENST00000485412 MYLPFQ96A32 169 aa14.83□□□□□ -0.04
SQSTM1-208ENST00000485412 TRMT2BQ96GJ1 504 aaKnown RBP14.83□□□□□ -0.04
SQSTM1-208ENST00000485412 MYRFLQ96LU7 910 aa14.83□□□□□ -0.04
SQSTM1-208ENST00000485412 ADAM33Q9BZ11 813 aa14.83□□□□□ -0.04
SQSTM1-208ENST00000485412 LINC00597Q9H2U6 94 aa14.83□□□□□ -0.04
SQSTM1-208ENST00000485412 ABCB6Q9NP58 842 aa14.83□□□□□ -0.04
SQSTM1-208ENST00000485412 CRTAC1Q9NQ79 661 aa14.83□□□□□ -0.04
SQSTM1-208ENST00000485412 PANK4Q9NVE7 773 aa14.83□□□□□ -0.04
SQSTM1-208ENST00000485412 UXTQ9UBK9 157 aaPredicted RBP14.83□□□□□ -0.04
SQSTM1-208ENST00000485412 ITGA11Q9UKX5 1188 aa14.83□□□□□ -0.04
SQSTM1-208ENST00000485412 EXOC7Q9UPT5 735 aa14.83□□□□□ -0.04
SQSTM1-208ENST00000485412 IGF2RP11717 2491 aa14.83□□□□□ -0.04
SQSTM1-208ENST00000485412 TMEM8BA6NDV4 472 aa14.82□□□□□ -0.04
SQSTM1-208ENST00000485412 SCAMP3O14828 347 aaKnown RBP14.82□□□□□ -0.04
SQSTM1-208ENST00000485412 CKMP06732 381 aa14.82□□□□□ -0.04
SQSTM1-208ENST00000485412 CEACAM1P13688 526 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms