RNA–Protein interactions for RNA: ENST00000481019.5

PTPRF-213, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 459 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-213ENST00000481019 IER5LQ5T953 404 aa13.02□□□□□ -0.33
PTPRF-213ENST00000481019 TANGO2Q6ICL3 276 aa13.02□□□□□ -0.33
PTPRF-213ENST00000481019 C11orf57Q6ZUT1 292 aaPredicted RBP13.02□□□□□ -0.33
PTPRF-213ENST00000481019 SLC44A3Q8N4M1 653 aa13.02□□□□□ -0.33
PTPRF-213ENST00000481019 KAT5Q92993 513 aa13.02□□□□□ -0.33
PTPRF-213ENST00000481019 RSPRY1Q96DX4 576 aa13.02□□□□□ -0.33
PTPRF-213ENST00000481019 CNOT6LQ96LI5 555 aaKnown RBP13.02□□□□□ -0.33
PTPRF-213ENST00000481019 ASB3Q9Y575 518 aa13.02□□□□□ -0.33
PTPRF-213ENST00000481019 CILPO75339 1184 aa13.01□□□□□ -0.33
PTPRF-213ENST00000481019 BEST1O76090 585 aa13.01□□□□□ -0.33
PTPRF-213ENST00000481019 NOL4O94818 638 aa13.01□□□□□ -0.33
PTPRF-213ENST00000481019 PDGFBP01127 241 aaPredicted RBP13.01□□□□□ -0.33
PTPRF-213ENST00000481019 F11P03951 625 aa13.01□□□□□ -0.33
PTPRF-213ENST00000481019 ALADP13716 330 aa13.01□□□□□ -0.33
PTPRF-213ENST00000481019 CDK11BP21127 795 aaKnown RBP13.01□□□□□ -0.33
PTPRF-213ENST00000481019 APBA1Q02410 837 aa13.01□□□□□ -0.33
PTPRF-213ENST00000481019 CYP4A22Q5TCH4 519 aa13.01□□□□□ -0.33
PTPRF-213ENST00000481019 C4orf50Q6ZRC1 276 aa13.01□□□□□ -0.33
PTPRF-213ENST00000481019 FAM35AQ86V20 835 aa13.01□□□□□ -0.33
PTPRF-213ENST00000481019 ARHGEF19Q8IW93 802 aa13.01□□□□□ -0.33
PTPRF-213ENST00000481019 FUKQ8N0W3 1084 aa13.01□□□□□ -0.33
PTPRF-213ENST00000481019 CRYBG2Q8N1P7 616 aa13.01□□□□□ -0.33
PTPRF-213ENST00000481019 UBR7Q8N806 425 aa13.01□□□□□ -0.33
PTPRF-213ENST00000481019 ASIC4Q96FT7 647 aa13.01□□□□□ -0.33
PTPRF-213ENST00000481019 FUBP3Q96I24 572 aaKnown RBP eCLIP13.01□□□□□ -0.33
PTPRF-213ENST00000481019 CYP3A43Q9HB55 503 aa13.01□□□□□ -0.33
PTPRF-213ENST00000481019 SAMSN1Q9NSI8 373 aaKnown RBP13.01□□□□□ -0.33
PTPRF-213ENST00000481019 FAM49BQ9NUQ9 324 aa13.01□□□□□ -0.33
PTPRF-213ENST00000481019 MAGED2Q9UNF1 606 aaPredicted RBP13.01□□□□□ -0.33
PTPRF-213ENST00000481019 SORCS3Q9UPU3 1222 aa13.01□□□□□ -0.33
PTPRF-213ENST00000481019 DENND4CQ5VZ89 1909 aa13.01□□□□□ -0.33
PTPRF-213ENST00000481019 F8VP50 259 aa13□□□□□ -0.33
PTPRF-213ENST00000481019 ZNF197O14709 1029 aa13□□□□□ -0.33
PTPRF-213ENST00000481019 CBFA2T2O43439 604 aa13□□□□□ -0.33
PTPRF-213ENST00000481019 MICAL2O94851 1124 aa13□□□□□ -0.33
PTPRF-213ENST00000481019 CALCAP01258 141 aa13□□□□□ -0.33
PTPRF-213ENST00000481019 P4HA1P13674 534 aa13□□□□□ -0.33
PTPRF-213ENST00000481019 GRIK1P39086 918 aa13□□□□□ -0.33
PTPRF-213ENST00000481019 VIPR2P41587 438 aa13□□□□□ -0.33
PTPRF-213ENST00000481019 TDGQ13569 410 aa13□□□□□ -0.33
PTPRF-213ENST00000481019 ZNF394Q53GI3 561 aa13□□□□□ -0.33
PTPRF-213ENST00000481019 TRIM67Q6ZTA4 783 aa13□□□□□ -0.33
PTPRF-213ENST00000481019 ITIH5Q86UX2 942 aa13□□□□□ -0.33
PTPRF-213ENST00000481019 LUZP1Q86V48 1076 aa13□□□□□ -0.33
PTPRF-213ENST00000481019 FAM114A1Q8IWE2 563 aa13□□□□□ -0.33
PTPRF-213ENST00000481019 AOPEPQ8N6M6 819 aa13□□□□□ -0.33
PTPRF-213ENST00000481019 SLC4A11Q8NBS3 891 aa13□□□□□ -0.33
PTPRF-213ENST00000481019 ZMIZ2Q8NF64 920 aa13□□□□□ -0.33
PTPRF-213ENST00000481019 SLC2A14Q8TDB8 520 aa13□□□□□ -0.33
PTPRF-213ENST00000481019 ASB16Q96NS5 453 aa13□□□□□ -0.33
PTPRF-213ENST00000481019 LRRC3BQ96PB8 259 aa13□□□□□ -0.33
PTPRF-213ENST00000481019 KCNK16Q96T55 309 aa13□□□□□ -0.33
PTPRF-213ENST00000481019 SMOQ99835 787 aa13□□□□□ -0.33
PTPRF-213ENST00000481019 IMPG2Q9BZV3 1241 aa13□□□□□ -0.33
PTPRF-213ENST00000481019 SMG9Q9H0W8 520 aaKnown RBP13□□□□□ -0.33
PTPRF-213ENST00000481019 ATXN3LQ9H3M9 355 aa13□□□□□ -0.33
PTPRF-213ENST00000481019 CISHQ9NSE2 258 aa13□□□□□ -0.33
PTPRF-213ENST00000481019 WDFY4Q6ZS81 3184 aa12.99□□□□□ -0.33
PTPRF-213ENST00000481019 TMEM221A6NGB7 291 aa12.99□□□□□ -0.33
PTPRF-213ENST00000481019 M0R296 226 aa12.99□□□□□ -0.33
PTPRF-213ENST00000481019 PMM2O15305 246 aa12.99□□□□□ -0.33
PTPRF-213ENST00000481019 GNA14O95837 355 aa12.99□□□□□ -0.33
PTPRF-213ENST00000481019 AFPP02771 609 aaKnown RBP12.99□□□□□ -0.33
PTPRF-213ENST00000481019 TPM2P07951 284 aa12.99□□□□□ -0.33
PTPRF-213ENST00000481019 ADORA2BP29275 332 aa12.99□□□□□ -0.33
PTPRF-213ENST00000481019 PGFP49763 221 aa12.99□□□□□ -0.33
PTPRF-213ENST00000481019 RAD23BP54727 409 aa12.99□□□□□ -0.33
PTPRF-213ENST00000481019 RPL10AP62906 217 aaKnown RBP12.99□□□□□ -0.33
PTPRF-213ENST00000481019 CUL2Q13617 745 aa12.99□□□□□ -0.33
PTPRF-213ENST00000481019 VEPH1Q14D04 833 aa12.99□□□□□ -0.33
PTPRF-213ENST00000481019 MAPRE1Q15691 268 aaKnown RBP12.99□□□□□ -0.33
PTPRF-213ENST00000481019 WDR44Q5JSH3 913 aa12.99□□□□□ -0.33
PTPRF-213ENST00000481019 GPR158Q5T848 1215 aa12.99□□□□□ -0.33
PTPRF-213ENST00000481019 GJB7Q6PEY0 223 aa12.99□□□□□ -0.33
PTPRF-213ENST00000481019 VSTM1Q6UX27 236 aa12.99□□□□□ -0.33
PTPRF-213ENST00000481019 HFE2Q6ZVN8 426 aa12.99□□□□□ -0.33
PTPRF-213ENST00000481019 UNC93AQ86WB7 457 aa12.99□□□□□ -0.33
PTPRF-213ENST00000481019 CREBRFQ8IUR6 639 aa12.99□□□□□ -0.33
PTPRF-213ENST00000481019 DHX40Q8IX18 779 aaKnown RBP12.99□□□□□ -0.33
PTPRF-213ENST00000481019 LEMD2Q8NC56 503 aa12.99□□□□□ -0.33
PTPRF-213ENST00000481019 EHBP1Q8NDI1 1231 aa12.99□□□□□ -0.33
PTPRF-213ENST00000481019 ZSCAN18Q8TBC5 510 aaPredicted RBP12.99□□□□□ -0.33
PTPRF-213ENST00000481019 SPATA17Q96L03 361 aa12.99□□□□□ -0.33
PTPRF-213ENST00000481019 C8orf48Q96LL4 319 aa12.99□□□□□ -0.33
PTPRF-213ENST00000481019 LRFN3Q9BTN0 628 aa12.99□□□□□ -0.33
PTPRF-213ENST00000481019 MED10Q9BTT4 135 aa12.99□□□□□ -0.33
PTPRF-213ENST00000481019 SLC46A2Q9BY10 475 aa12.99□□□□□ -0.33
PTPRF-213ENST00000481019 INTS2Q9H0H0 1204 aaKnown RBP12.99□□□□□ -0.33
PTPRF-213ENST00000481019 GDE1Q9NZC3 331 aa12.99□□□□□ -0.33
PTPRF-213ENST00000481019 IGSF9Q9P2J2 1179 aa12.99□□□□□ -0.33
PTPRF-213ENST00000481019 DUSP12Q9UNI6 340 aa12.99□□□□□ -0.33
PTPRF-213ENST00000481019 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.99□□□□□ -0.33
PTPRF-213ENST00000481019 ZFP37Q9Y6Q3 630 aaPredicted RBP12.99□□□□□ -0.33
PTPRF-213ENST00000481019 ZNF638Q14966 1978 aaKnown RBP12.98□□□□□ -0.33
PTPRF-213ENST00000481019 ANAPC1Q9H1A4 1944 aa12.98□□□□□ -0.33
PTPRF-213ENST00000481019 RNF225M0QZC1 329 aaPredicted RBP12.98□□□□□ -0.33
PTPRF-213ENST00000481019 TNFRSF10BO14763 440 aa12.98□□□□□ -0.33
PTPRF-213ENST00000481019 GPR37L1O60883 481 aa12.98□□□□□ -0.33
PTPRF-213ENST00000481019 PRAMEF12O95522 483 aa12.98□□□□□ -0.33
PTPRF-213ENST00000481019 CSH1P0DML2 217 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms