RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 AGTPBP1Q9UPW5 1226 aa19.64■□□□□ 0.73
CCDC88B-207ENST00000479965 CYB561D2O14569 222 aa19.63■□□□□ 0.73
CCDC88B-207ENST00000479965 C6orf222P0C671 652 aaPredicted RBP19.63■□□□□ 0.73
CCDC88B-207ENST00000479965 CHI3L2Q15782 390 aa19.63■□□□□ 0.73
CCDC88B-207ENST00000479965 DBN1Q16643 649 aa19.63■□□□□ 0.73
CCDC88B-207ENST00000479965 KBTBD12Q3ZCT8 623 aa19.63■□□□□ 0.73
CCDC88B-207ENST00000479965 SPOPLQ6IQ16 392 aa19.63■□□□□ 0.73
CCDC88B-207ENST00000479965 FAM172AQ8WUF8 416 aa19.63■□□□□ 0.73
CCDC88B-207ENST00000479965 KLHL4Q9C0H6 718 aa19.63■□□□□ 0.73
CCDC88B-207ENST00000479965 ADAMTS6Q9UKP5 1117 aa19.63■□□□□ 0.73
CCDC88B-207ENST00000479965 CAPN14A8MX76 684 aa19.63■□□□□ 0.73
CCDC88B-207ENST00000479965 ETV4P43268 484 aa19.63■□□□□ 0.73
CCDC88B-207ENST00000479965 GPC3P51654 580 aa19.63■□□□□ 0.73
CCDC88B-207ENST00000479965 NRLP54845 237 aa19.63■□□□□ 0.73
CCDC88B-207ENST00000479965 RALGPS1Q5JS13 557 aa19.63■□□□□ 0.73
CCDC88B-207ENST00000479965 EFHC1Q5JVL4 640 aa19.63■□□□□ 0.73
CCDC88B-207ENST00000479965 SRPK1Q96SB4 655 aaKnown RBP19.63■□□□□ 0.73
CCDC88B-207ENST00000479965 WWP1Q9H0M0 922 aa19.63■□□□□ 0.73
CCDC88B-207ENST00000479965 KCND2Q9NZV8 630 aa19.63■□□□□ 0.73
CCDC88B-207ENST00000479965 STRIP2Q9ULQ0 834 aa19.63■□□□□ 0.73
CCDC88B-207ENST00000479965 PCDHB2Q9Y5E7 798 aa19.63■□□□□ 0.73
CCDC88B-207ENST00000479965 KAT6AQ92794 2004 aa19.63■□□□□ 0.73
CCDC88B-207ENST00000479965 GOLGB1Q14789 3259 aaKnown RBP19.63■□□□□ 0.73
CCDC88B-207ENST00000479965 FKBP6O75344 327 aa19.62■□□□□ 0.73
CCDC88B-207ENST00000479965 TMCC1O94876 653 aa19.62■□□□□ 0.73
CCDC88B-207ENST00000479965 SETSIPP0DME0 302 aa19.62■□□□□ 0.73
CCDC88B-207ENST00000479965 PTP4A2Q12974 167 aa19.62■□□□□ 0.73
CCDC88B-207ENST00000479965 RABGAP1LQ5R372 815 aa19.62■□□□□ 0.73
CCDC88B-207ENST00000479965 ZCCHC23Q6ZST2 131 aa19.62■□□□□ 0.73
CCDC88B-207ENST00000479965 RCOR2Q8IZ40 523 aa19.62■□□□□ 0.73
CCDC88B-207ENST00000479965 PDIK1LQ8N165 341 aa19.62■□□□□ 0.73
CCDC88B-207ENST00000479965 CPT1BQ92523 772 aa19.62■□□□□ 0.73
CCDC88B-207ENST00000479965 EBF4Q9BQW3 602 aa19.62■□□□□ 0.73
CCDC88B-207ENST00000479965 WDR83Q9BRX9 315 aaKnown RBP19.62■□□□□ 0.73
CCDC88B-207ENST00000479965 TEKT3Q9BXF9 490 aa19.62■□□□□ 0.73
CCDC88B-207ENST00000479965 NARFQ9UHQ1 456 aa19.62■□□□□ 0.73
CCDC88B-207ENST00000479965 F8VP50 259 aa19.62■□□□□ 0.73
CCDC88B-207ENST00000479965 IPO5O00410 1097 aaKnown RBP19.62■□□□□ 0.73
CCDC88B-207ENST00000479965 NDUFB10O96000 172 aa19.62■□□□□ 0.73
CCDC88B-207ENST00000479965 BTKQ06187 659 aa19.62■□□□□ 0.73
CCDC88B-207ENST00000479965 FAM102BQ5T8I3 360 aa19.62■□□□□ 0.73
CCDC88B-207ENST00000479965 SPOCD1Q6ZMY3 1216 aa19.62■□□□□ 0.73
CCDC88B-207ENST00000479965 MON1BQ7L1V2 547 aa19.62■□□□□ 0.73
CCDC88B-207ENST00000479965 RSAD2Q8WXG1 361 aa19.62■□□□□ 0.73
CCDC88B-207ENST00000479965 PHF12Q96QT6 1004 aa19.62■□□□□ 0.73
CCDC88B-207ENST00000479965 XPO7Q9UIA9 1087 aaKnown RBP19.62■□□□□ 0.73
CCDC88B-207ENST00000479965 HNRNPCP07910 306 aaKnown RBP eCLIP19.62■□□□□ 0.73
CCDC88B-207ENST00000479965 SH3BGRP55822 239 aaPredicted RBP19.62■□□□□ 0.73
CCDC88B-207ENST00000479965 PSMC5P62195 406 aa19.62■□□□□ 0.73
CCDC88B-207ENST00000479965 ZNF200P98182 395 aaPredicted RBP19.62■□□□□ 0.73
CCDC88B-207ENST00000479965 MSLNQ13421 630 aaPredicted RBP19.62■□□□□ 0.73
CCDC88B-207ENST00000479965 HSF5Q4G112 596 aaPredicted RBP19.62■□□□□ 0.73
CCDC88B-207ENST00000479965 CEP55Q53EZ4 464 aa19.62■□□□□ 0.73
CCDC88B-207ENST00000479965 MIER3Q7Z3K6 550 aa19.62■□□□□ 0.73
CCDC88B-207ENST00000479965 PPIL6Q8IXY8 311 aa19.62■□□□□ 0.73
CCDC88B-207ENST00000479965 MIPOL1Q8TD10 442 aa19.62■□□□□ 0.73
CCDC88B-207ENST00000479965 PCDH9Q9HC56 1237 aa19.62■□□□□ 0.73
CCDC88B-207ENST00000479965 KCNK4Q9NYG8 393 aa19.62■□□□□ 0.73
CCDC88B-207ENST00000479965 HSFX1Q9UBD0 423 aa19.62■□□□□ 0.73
CCDC88B-207ENST00000479965 SMTNL2Q2TAL5 461 aa19.61■□□□□ 0.73
CCDC88B-207ENST00000479965 TMCO4Q5TGY1 634 aa19.61■□□□□ 0.73
CCDC88B-207ENST00000479965 TMEM270Q6UE05 265 aa19.61■□□□□ 0.73
CCDC88B-207ENST00000479965 RNF111Q6ZNA4 994 aa19.61■□□□□ 0.73
CCDC88B-207ENST00000479965 CHSY1Q86X52 802 aa19.61■□□□□ 0.73
CCDC88B-207ENST00000479965 PPM1NQ8N819 430 aa19.61■□□□□ 0.73
CCDC88B-207ENST00000479965 E2F7Q96AV8 911 aa19.61■□□□□ 0.73
CCDC88B-207ENST00000479965 TRIM49D1C9J1S8 452 aa19.61■□□□□ 0.73
CCDC88B-207ENST00000479965 IL1R1P14778 569 aa19.61■□□□□ 0.73
CCDC88B-207ENST00000479965 CHN2P52757 468 aa19.61■□□□□ 0.73
CCDC88B-207ENST00000479965 TCHHL1Q5QJ38 904 aaPredicted RBP19.61■□□□□ 0.73
CCDC88B-207ENST00000479965 DCUN1D2Q6PH85 259 aa19.61■□□□□ 0.73
CCDC88B-207ENST00000479965 RBM12BQ8IXT5 1001 aaKnown RBP19.61■□□□□ 0.73
CCDC88B-207ENST00000479965 WDR11Q9BZH6 1224 aa19.61■□□□□ 0.73
CCDC88B-207ENST00000479965 SOX13Q9UN79 622 aa19.61■□□□□ 0.73
CCDC88B-207ENST00000479965 TAF1LQ8IZX4 1826 aa19.61■□□□□ 0.73
CCDC88B-207ENST00000479965 CIAPIN1Q6FI81 312 aa19.6■□□□□ 0.73
CCDC88B-207ENST00000479965 KCTD17Q8N5Z5 321 aa19.6■□□□□ 0.73
CCDC88B-207ENST00000479965 DGCR14Q96DF8 476 aaKnown RBP19.6■□□□□ 0.73
CCDC88B-207ENST00000479965 SENP7Q9BQF6 1050 aa19.6■□□□□ 0.73
CCDC88B-207ENST00000479965 GRIP2Q9C0E4 1043 aa19.6■□□□□ 0.73
CCDC88B-207ENST00000479965 A0A088AWK7 358 aa19.6■□□□□ 0.73
CCDC88B-207ENST00000479965 C15orf38-AP3S2A0A0A6YYH1 394 aa19.6■□□□□ 0.73
CCDC88B-207ENST00000479965 SMIM31A0A1B0GVY4 71 aa19.6■□□□□ 0.73
CCDC88B-207ENST00000479965 TMEM63AO94886 807 aa19.6■□□□□ 0.73
CCDC88B-207ENST00000479965 ELK3P41970 407 aa19.6■□□□□ 0.73
CCDC88B-207ENST00000479965 OASLQ15646 514 aaKnown RBP19.6■□□□□ 0.73
CCDC88B-207ENST00000479965 ARPINQ7Z6K5 226 aa19.6■□□□□ 0.73
CCDC88B-207ENST00000479965 CRLF3Q8IUI8 442 aa19.6■□□□□ 0.73
CCDC88B-207ENST00000479965 NUDCD3Q8IVD9 361 aa19.6■□□□□ 0.73
CCDC88B-207ENST00000479965 IGDCC3Q8IVU1 814 aa19.6■□□□□ 0.73
CCDC88B-207ENST00000479965 ICA1LQ8NDH6 482 aa19.6■□□□□ 0.73
CCDC88B-207ENST00000479965 PPP1R14CQ8TAE6 165 aa19.6■□□□□ 0.73
CCDC88B-207ENST00000479965 FEZF2Q8TBJ5 459 aa19.6■□□□□ 0.73
CCDC88B-207ENST00000479965 CFAP36Q96G28 342 aa19.6■□□□□ 0.73
CCDC88B-207ENST00000479965 CLMNQ96JQ2 1002 aa19.6■□□□□ 0.73
CCDC88B-207ENST00000479965 MCEEQ96PE7 176 aa19.6■□□□□ 0.73
CCDC88B-207ENST00000479965 CLPTM1O96005 669 aa19.6■□□□□ 0.73
CCDC88B-207ENST00000479965 DHRS4L1P0CG22 281 aa19.6■□□□□ 0.73
CCDC88B-207ENST00000479965 RGS2P41220 211 aa19.6■□□□□ 0.73
CCDC88B-207ENST00000479965 GALK1P51570 392 aa19.6■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms