RNA–Protein interactions for RNA: ENST00000470268.1

SF3B1-208, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 2,003 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-208ENST00000470268 MATR3P43243 847 aaKnown RBP eCLIP5.11□□□□□ -1.594e-7■■■■□ 22.4
SF3B1-208ENST00000470268 EPHB4P54760 987 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 SPAG1Q07617 926 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 CYP24A1Q07973 514 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 BFSP1Q12934 665 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 SLC10A6Q3KNW5 377 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 LMBRD2Q68DH5 695 aaPredicted RBP5.11□□□□□ -1.59
SF3B1-208ENST00000470268 MFSD5Q6N075 450 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 C16orf59Q7L2K0 433 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 HDXQ7Z353 690 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 FAM186BQ8IYM0 893 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 GSTCDQ8NEC7 633 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 PARD3BQ8TEW8 1205 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 ANP32BQ92688 251 aaKnown RBP5.11□□□□□ -1.59
SF3B1-208ENST00000470268 LPPQ93052 612 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 MFSD14AQ96MC6 490 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 ZMAT2Q96NC0 199 aaKnown RBP5.11□□□□□ -1.59
SF3B1-208ENST00000470268 ADPGKQ9BRR6 497 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 TMPRSS13Q9BYE2 586 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 VPS16Q9H269 839 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 PDE11AQ9HCR9 933 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 CHST12Q9NRB3 414 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 FAM105AQ9NUU6 356 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 TAB2Q9NYJ8 693 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 LIMA1Q9UHB6 759 aaKnown RBP5.11□□□□□ -1.59
SF3B1-208ENST00000470268 PCDHB2Q9Y5E7 798 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 PCDHGC5Q9Y5F6 944 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP5.11□□□□□ -1.59
SF3B1-208ENST00000470268 TTC26A0AVF1 554 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 ZNF233A6NK53 670 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 LRRIQ3A6PVS8 624 aaPredicted RBP5.11□□□□□ -1.59
SF3B1-208ENST00000470268 ENPP3O14638 875 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 KIAA0391O15091 583 aaKnown RBP5.11□□□□□ -1.59
SF3B1-208ENST00000470268 MAPK13O15264 365 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 ZNF623O75123 536 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 RECQL4O94761 1208 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 STK10O94804 968 aaKnown RBP5.11□□□□□ -1.59
SF3B1-208ENST00000470268 LDHAP00338 332 aaKnown RBP5.11□□□□□ -1.59
SF3B1-208ENST00000470268 EPB41P11171 864 aaKnown RBP5.11□□□□□ -1.59
SF3B1-208ENST00000470268 IMPDH2P12268 514 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 ZSCAN20P17040 1043 aaPredicted RBP5.11□□□□□ -1.59
SF3B1-208ENST00000470268 EEF1GP26641 437 aaKnown RBP5.11□□□□□ -1.59
SF3B1-208ENST00000470268 FAM189BP81408 668 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 PPP3CAQ08209 521 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 NCBP1Q09161 790 aaKnown RBP5.11□□□□□ -1.59
SF3B1-208ENST00000470268 CCDC40Q4G0X9 1142 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 CBWD6Q4V339 395 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 ZC3H12AQ5D1E8 599 aaKnown RBP5.11□□□□□ -1.59
SF3B1-208ENST00000470268 CBWD3Q5JTY5 395 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 CBWD5Q5RIA9 395 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 ALKAL1Q6UXT8 129 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 LIN28BQ6ZN17 250 aaKnown RBP eCLIP5.11□□□□□ -1.59
SF3B1-208ENST00000470268 FRMD5Q7Z6J6 570 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 BRSK2Q8IWQ3 736 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 EFCAB13Q8IY85 973 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 OR5B17Q8NGF7 314 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 UBASH3BQ8TF42 649 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 BADQ92934 168 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 CCDC127Q96BQ5 260 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 WDR89Q96FK6 387 aaPredicted RBP5.11□□□□□ -1.59
SF3B1-208ENST00000470268 TUBGCP2Q9BSJ2 902 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 APOL6Q9BWW8 343 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 KCNF1Q9H3M0 494 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 RGS18Q9NS28 235 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 MIOSQ9NXC5 875 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 RBAKQ9NYW8 714 aaPredicted RBP5.11□□□□□ -1.59
SF3B1-208ENST00000470268 IFNKQ9P0W0 207 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 ARMCX3Q9UH62 379 aaPredicted RBP5.11□□□□□ -1.59
SF3B1-208ENST00000470268 ZMYND8Q9ULU4 1186 aaPredicted RBP5.11□□□□□ -1.59
SF3B1-208ENST00000470268 PLAGL2Q9UPG8 496 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 FRMD4BQ9Y2L6 1034 aa5.11□□□□□ -1.59
SF3B1-208ENST00000470268 ALPK3Q96L96 1907 aa5.1□□□□□ -1.59
SF3B1-208ENST00000470268 LACTBL1A8MY62 500 aa5.1□□□□□ -1.59
SF3B1-208ENST00000470268 PTGESO14684 152 aa5.1□□□□□ -1.59
SF3B1-208ENST00000470268 PARNO95453 639 aaKnown RBP5.1□□□□□ -1.59
SF3B1-208ENST00000470268 FGFR1OPO95684 399 aaKnown RBP5.1□□□□□ -1.59
SF3B1-208ENST00000470268 GNA14O95837 355 aa5.1□□□□□ -1.59
SF3B1-208ENST00000470268 PTMAP06454 111 aaKnown RBP5.1□□□□□ -1.59
SF3B1-208ENST00000470268 NFICP08651 508 aa5.1□□□□□ -1.59
SF3B1-208ENST00000470268 CLTAP09496 248 aa5.1□□□□□ -1.59
SF3B1-208ENST00000470268 DLATP10515 647 aaKnown RBP5.1□□□□□ -1.59
SF3B1-208ENST00000470268 IBSPP21815 317 aaPredicted RBP5.1□□□□□ -1.59
SF3B1-208ENST00000470268 MTIF2P46199 727 aaKnown RBP5.1□□□□□ -1.59
SF3B1-208ENST00000470268 VAMP7P51809 220 aa5.1□□□□□ -1.59
SF3B1-208ENST00000470268 COPB1P53618 953 aaKnown RBP5.1□□□□□ -1.59
SF3B1-208ENST00000470268 APBA1Q02410 837 aa5.1□□□□□ -1.59
SF3B1-208ENST00000470268 RING1Q06587 406 aa5.1□□□□□ -1.59
SF3B1-208ENST00000470268 LRMPQ12912 555 aa5.1□□□□□ -1.59
SF3B1-208ENST00000470268 INPP5AQ14642 412 aa5.1□□□□□ -1.59
SF3B1-208ENST00000470268 NR1I3Q14994 352 aa5.1□□□□□ -1.59
SF3B1-208ENST00000470268 PSMD6Q15008 389 aa5.1□□□□□ -1.59
SF3B1-208ENST00000470268 UVSSAQ2YD98 709 aa5.1□□□□□ -1.59
SF3B1-208ENST00000470268 DCAF4L1Q3SXM0 396 aa5.1□□□□□ -1.59
SF3B1-208ENST00000470268 VWA3BQ502W6 1294 aa5.1□□□□□ -1.59
SF3B1-208ENST00000470268 DCAF17Q5H9S7 520 aaPredicted RBP5.1□□□□□ -1.59
SF3B1-208ENST00000470268 GLRA4Q5JXX5 417 aa5.1□□□□□ -1.59
SF3B1-208ENST00000470268 WIPI1Q5MNZ9 446 aaPredicted RBP5.1□□□□□ -1.59
SF3B1-208ENST00000470268 TCERG1LQ5VWI1 586 aa5.1□□□□□ -1.59
SF3B1-208ENST00000470268 LRFN4Q6PJG9 635 aa5.1□□□□□ -1.59
SF3B1-208ENST00000470268 SARM1Q6SZW1 724 aa5.1□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms