RNA–Protein interactions for RNA: ENST00000468949.1

HDAC6-216, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-216ENST00000468949 PRKCIP41743 596 aa8.6□□□□□ -1.03
HDAC6-216ENST00000468949 MLLT3P42568 568 aaPredicted RBP8.6□□□□□ -1.03
HDAC6-216ENST00000468949 NSFP46459 744 aaKnown RBP8.6□□□□□ -1.03
HDAC6-216ENST00000468949 CDR2Q01850 454 aa8.6□□□□□ -1.03
HDAC6-216ENST00000468949 ROR1Q01973 937 aa8.6□□□□□ -1.03
HDAC6-216ENST00000468949 BST2Q10589 180 aaKnown RBP8.6□□□□□ -1.03
HDAC6-216ENST00000468949 PLD1Q13393 1074 aa8.6□□□□□ -1.03
HDAC6-216ENST00000468949 VEPH1Q14D04 833 aa8.6□□□□□ -1.03
HDAC6-216ENST00000468949 SPA17Q15506 151 aa8.6□□□□□ -1.03
HDAC6-216ENST00000468949 TAF12Q16514 161 aa8.6□□□□□ -1.03
HDAC6-216ENST00000468949 AAK1Q2M2I8 961 aa8.6□□□□□ -1.03
HDAC6-216ENST00000468949 TJAP1Q5JTD0 557 aa8.6□□□□□ -1.03
HDAC6-216ENST00000468949 PPP1R26Q5T8A7 1209 aaPredicted RBP8.6□□□□□ -1.03
HDAC6-216ENST00000468949 TPGS2Q68CL5 300 aa8.6□□□□□ -1.03
HDAC6-216ENST00000468949 ARHGAP17Q68EM7 881 aa8.6□□□□□ -1.03
HDAC6-216ENST00000468949 SLC8B1Q6J4K2 584 aa8.6□□□□□ -1.03
HDAC6-216ENST00000468949 NOP9Q86U38 636 aaKnown RBP8.6□□□□□ -1.03
HDAC6-216ENST00000468949 TMTC1Q8IUR5 882 aa8.6□□□□□ -1.03
HDAC6-216ENST00000468949 PASD1Q8IV76 773 aa8.6□□□□□ -1.03
HDAC6-216ENST00000468949 SCN4BQ8IWT1 228 aa8.6□□□□□ -1.03
HDAC6-216ENST00000468949 CRYBG2Q8N1P7 616 aa8.6□□□□□ -1.03
HDAC6-216ENST00000468949 TXLNBQ8N3L3 684 aa8.6□□□□□ -1.03
HDAC6-216ENST00000468949 C12orf29Q8N999 325 aa8.6□□□□□ -1.03
HDAC6-216ENST00000468949 TMEM35BQ8NCS4 154 aa8.6□□□□□ -1.03
HDAC6-216ENST00000468949 WHAMMQ8TF30 809 aa8.6□□□□□ -1.03
HDAC6-216ENST00000468949 ZNF606Q8WXB4 792 aa8.6□□□□□ -1.03
HDAC6-216ENST00000468949 PCED1BQ96HM7 432 aa8.6□□□□□ -1.03
HDAC6-216ENST00000468949 FUBP3Q96I24 572 aaKnown RBP eCLIP8.6□□□□□ -1.03
HDAC6-216ENST00000468949 PDLIM2Q96JY6 352 aa8.6□□□□□ -1.03
HDAC6-216ENST00000468949 TMEM209Q96SK2 561 aa8.6□□□□□ -1.03
HDAC6-216ENST00000468949 AGPAT1Q99943 283 aa8.6□□□□□ -1.03
HDAC6-216ENST00000468949 MIS12Q9H081 205 aa8.6□□□□□ -1.03
HDAC6-216ENST00000468949 DMAP1Q9NPF5 467 aaPredicted RBP8.6□□□□□ -1.03
HDAC6-216ENST00000468949 CRTAC1Q9NQ79 661 aa8.6□□□□□ -1.03
HDAC6-216ENST00000468949 ST7Q9NRC1 585 aa8.6□□□□□ -1.03
HDAC6-216ENST00000468949 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.6□□□□□ -1.03
HDAC6-216ENST00000468949 COG5Q9UP83 839 aa8.6□□□□□ -1.03
HDAC6-216ENST00000468949 MYBPHLA2RUH7 354 aa8.59□□□□□ -1.03
HDAC6-216ENST00000468949 MTMR11A4FU01 709 aa8.59□□□□□ -1.03
HDAC6-216ENST00000468949 C2orf71A6NGG8 1288 aa8.59□□□□□ -1.03
HDAC6-216ENST00000468949 RNF225M0QZC1 329 aaPredicted RBP8.59□□□□□ -1.03
HDAC6-216ENST00000468949 O00370 1275 aa8.59□□□□□ -1.03
HDAC6-216ENST00000468949 TEX28O15482 410 aa8.59□□□□□ -1.03
HDAC6-216ENST00000468949 NPR3P17342 541 aa8.59□□□□□ -1.03
HDAC6-216ENST00000468949 BDNFP23560 247 aa8.59□□□□□ -1.03
HDAC6-216ENST00000468949 HNRNPH3P31942 346 aaKnown RBP8.59□□□□□ -1.03
HDAC6-216ENST00000468949 SSTR3P32745 418 aaPredicted RBP8.59□□□□□ -1.03
HDAC6-216ENST00000468949 EIF4A3P38919 411 aaKnown RBP8.59□□□□□ -1.03
HDAC6-216ENST00000468949 ALDH1A3P47895 512 aa8.59□□□□□ -1.03
HDAC6-216ENST00000468949 TUFMP49411 452 aaKnown RBP8.59□□□□□ -1.03
HDAC6-216ENST00000468949 CDR1P51861 262 aa8.59□□□□□ -1.03
HDAC6-216ENST00000468949 KIF11P52732 1056 aa8.59□□□□□ -1.03
HDAC6-216ENST00000468949 ERVFC1P60507 584 aa8.59□□□□□ -1.03
HDAC6-216ENST00000468949 RPL10AP62906 217 aaKnown RBP8.59□□□□□ -1.03
HDAC6-216ENST00000468949 CDK17Q00537 523 aa8.59□□□□□ -1.03
HDAC6-216ENST00000468949 ADCY1Q08828 1119 aa8.59□□□□□ -1.03
HDAC6-216ENST00000468949 GPR17Q13304 367 aa8.59□□□□□ -1.03
HDAC6-216ENST00000468949 MRPL58Q14197 206 aaKnown RBP8.59□□□□□ -1.03
HDAC6-216ENST00000468949 ARID5BQ14865 1188 aa8.59□□□□□ -1.03
HDAC6-216ENST00000468949 CNGA2Q16280 664 aa8.59□□□□□ -1.03
HDAC6-216ENST00000468949 MEA1Q16626 185 aa8.59□□□□□ -1.03
HDAC6-216ENST00000468949 KIAA0319Q5VV43 1072 aa8.59□□□□□ -1.03
HDAC6-216ENST00000468949 E4F1Q66K89 784 aaPredicted RBP8.59□□□□□ -1.03
HDAC6-216ENST00000468949 LCLAT1Q6UWP7 414 aa8.59□□□□□ -1.03
HDAC6-216ENST00000468949 VSTM1Q6UX27 236 aa8.59□□□□□ -1.03
HDAC6-216ENST00000468949 CCDC149Q6ZUS6 474 aa8.59□□□□□ -1.03
HDAC6-216ENST00000468949 PALB2Q86YC2 1186 aa8.59□□□□□ -1.03
HDAC6-216ENST00000468949 CCDC170Q8IYT3 715 aa8.59□□□□□ -1.03
HDAC6-216ENST00000468949 SIX6OS1Q8N1H7 587 aa8.59□□□□□ -1.03
HDAC6-216ENST00000468949 ELMOD1Q8N336 334 aa8.59□□□□□ -1.03
HDAC6-216ENST00000468949 MRPL43Q8N983 215 aaKnown RBP8.59□□□□□ -1.03
HDAC6-216ENST00000468949 C1orf131Q8NDD1 294 aaKnown RBP8.59□□□□□ -1.03
HDAC6-216ENST00000468949 SLC20A1Q8WUM9 679 aa8.59□□□□□ -1.03
HDAC6-216ENST00000468949 TRIM11Q96F44 468 aa8.59□□□□□ -1.03
HDAC6-216ENST00000468949 PPP1R9BQ96SB3 815 aa8.59□□□□□ -1.03
HDAC6-216ENST00000468949 HNRNPABQ99729 332 aaKnown RBP8.59□□□□□ -1.03
HDAC6-216ENST00000468949 RTP3Q9BQQ7 232 aa8.59□□□□□ -1.03
HDAC6-216ENST00000468949 ZNF518BQ9C0D4 1074 aa8.59□□□□□ -1.03
HDAC6-216ENST00000468949 NSUN3Q9H649 340 aaKnown RBP8.59□□□□□ -1.03
HDAC6-216ENST00000468949 TLE6Q9H808 572 aa8.59□□□□□ -1.03
HDAC6-216ENST00000468949 NHEJ1Q9H9Q4 299 aaPredicted RBP8.59□□□□□ -1.03
HDAC6-216ENST00000468949 CYP4F11Q9HBI6 524 aa8.59□□□□□ -1.03
HDAC6-216ENST00000468949 LRRC4Q9HBW1 653 aa8.59□□□□□ -1.03
HDAC6-216ENST00000468949 ABCB6Q9NP58 842 aa8.59□□□□□ -1.03
HDAC6-216ENST00000468949 ACP6Q9NPH0 428 aa8.59□□□□□ -1.03
HDAC6-216ENST00000468949 PRDM6Q9NQX0 595 aa8.59□□□□□ -1.03
HDAC6-216ENST00000468949 AFF4Q9UHB7 1163 aaKnown RBP8.59□□□□□ -1.03
HDAC6-216ENST00000468949 NOCTQ9UK39 431 aaKnown RBP8.59□□□□□ -1.03
HDAC6-216ENST00000468949 MAFFQ9ULX9 164 aa8.59□□□□□ -1.03
HDAC6-216ENST00000468949 WDR27A2RRH5 827 aa8.58□□□□□ -1.04
HDAC6-216ENST00000468949 SOWAHDA6NJG2 315 aa8.58□□□□□ -1.04
HDAC6-216ENST00000468949 TMCO5BA8MYB1 307 aa8.58□□□□□ -1.04
HDAC6-216ENST00000468949 CLDN5O00501 218 aa8.58□□□□□ -1.04
HDAC6-216ENST00000468949 FSCN2O14926 492 aa8.58□□□□□ -1.04
HDAC6-216ENST00000468949 ARHGAP6O43182 974 aa8.58□□□□□ -1.04
HDAC6-216ENST00000468949 EFEMP2O95967 443 aa8.58□□□□□ -1.04
HDAC6-216ENST00000468949 CALCAP01258 141 aa8.58□□□□□ -1.04
HDAC6-216ENST00000468949 LRG1P02750 347 aa8.58□□□□□ -1.04
HDAC6-216ENST00000468949 PLEKP08567 350 aaPredicted RBP8.58□□□□□ -1.04
HDAC6-216ENST00000468949 CNPP09543 421 aaKnown RBP8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms