RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 ACOT1Q86TX2 421 aa12.6□□□□□ -0.39
VPS52-213ENST00000461743 IRF2BP1Q8IU81 584 aa12.6□□□□□ -0.39
VPS52-213ENST00000461743 HS6ST3Q8IZP7 471 aa12.6□□□□□ -0.39
VPS52-213ENST00000461743 UBR7Q8N806 425 aa12.6□□□□□ -0.39
VPS52-213ENST00000461743 EDAQ92838 391 aa12.6□□□□□ -0.39
VPS52-213ENST00000461743 JAKMIP2Q96AA8 810 aa12.6□□□□□ -0.39
VPS52-213ENST00000461743 E2F7Q96AV8 911 aa12.6□□□□□ -0.39
VPS52-213ENST00000461743 TCEAL4Q96EI5 215 aa12.6□□□□□ -0.39
VPS52-213ENST00000461743 TTLL2Q9BWV7 592 aa12.6□□□□□ -0.39
VPS52-213ENST00000461743 B3GNT5Q9BYG0 378 aa12.6□□□□□ -0.39
VPS52-213ENST00000461743 ZNF518BQ9C0D4 1074 aa12.6□□□□□ -0.39
VPS52-213ENST00000461743 NAT10Q9H0A0 1025 aaKnown RBP12.6□□□□□ -0.39
VPS52-213ENST00000461743 KCNK12Q9HB15 430 aa12.6□□□□□ -0.39
VPS52-213ENST00000461743 TRPV4Q9HBA0 871 aa12.6□□□□□ -0.39
VPS52-213ENST00000461743 IL21Q9HBE4 155 aa12.6□□□□□ -0.39
VPS52-213ENST00000461743 ZNF334Q9HCZ1 680 aaPredicted RBP12.6□□□□□ -0.39
VPS52-213ENST00000461743 PNPLA8Q9NP80 782 aa12.6□□□□□ -0.39
VPS52-213ENST00000461743 CISHQ9NSE2 258 aa12.6□□□□□ -0.39
VPS52-213ENST00000461743 LIMD1Q9UGP4 676 aa12.6□□□□□ -0.39
VPS52-213ENST00000461743 HMGXB4Q9UGU5 601 aa12.6□□□□□ -0.39
VPS52-213ENST00000461743 NFE2L3Q9Y4A8 694 aa12.6□□□□□ -0.39
VPS52-213ENST00000461743 NCANO14594 1321 aa12.6□□□□□ -0.39
VPS52-213ENST00000461743 A0A1W2PRU2 124 aa12.59□□□□□ -0.39
VPS52-213ENST00000461743 SLC38A8A6NNN8 435 aa12.59□□□□□ -0.39
VPS52-213ENST00000461743 F8VP50 259 aa12.59□□□□□ -0.39
VPS52-213ENST00000461743 ECI2O75521 394 aa12.59□□□□□ -0.39
VPS52-213ENST00000461743 RTN3O95197 1032 aaPredicted RBP12.59□□□□□ -0.39
VPS52-213ENST00000461743 FAM200BP0CF97 657 aa12.59□□□□□ -0.39
VPS52-213ENST00000461743 CD58P19256 250 aa12.59□□□□□ -0.39
VPS52-213ENST00000461743 GABRR2P28476 465 aa12.59□□□□□ -0.39
VPS52-213ENST00000461743 PPP3CCP48454 512 aa12.59□□□□□ -0.39
VPS52-213ENST00000461743 PDE6CP51160 858 aa12.59□□□□□ -0.39
VPS52-213ENST00000461743 MYL5Q02045 173 aa12.59□□□□□ -0.39
VPS52-213ENST00000461743 TYRO3Q06418 890 aa12.59□□□□□ -0.39
VPS52-213ENST00000461743 SIGLEC14Q08ET2 396 aa12.59□□□□□ -0.39
VPS52-213ENST00000461743 NFKBIBQ15653 356 aa12.59□□□□□ -0.39
VPS52-213ENST00000461743 DDR2Q16832 855 aa12.59□□□□□ -0.39
VPS52-213ENST00000461743 CAVIN1Q6NZI2 390 aaKnown RBP12.59□□□□□ -0.39
VPS52-213ENST00000461743 GBP6Q6ZN66 633 aa12.59□□□□□ -0.39
VPS52-213ENST00000461743 DENND5BQ6ZUT9 1274 aa12.59□□□□□ -0.39
VPS52-213ENST00000461743 GAREM2Q75VX8 874 aa12.59□□□□□ -0.39
VPS52-213ENST00000461743 SCN4BQ8IWT1 228 aa12.59□□□□□ -0.39
VPS52-213ENST00000461743 FUKQ8N0W3 1084 aa12.59□□□□□ -0.39
VPS52-213ENST00000461743 LMO3Q8TAP4 145 aa12.59□□□□□ -0.39
VPS52-213ENST00000461743 WHAMMQ8TF30 809 aa12.59□□□□□ -0.39
VPS52-213ENST00000461743 ING5Q8WYH8 240 aa12.59□□□□□ -0.39
VPS52-213ENST00000461743 OVCA2Q8WZ82 227 aa12.59□□□□□ -0.39
VPS52-213ENST00000461743 SMARCD2Q92925 531 aa12.59□□□□□ -0.39
VPS52-213ENST00000461743 ELSPBP1Q96BH3 223 aa12.59□□□□□ -0.39
VPS52-213ENST00000461743 ELMO3Q96BJ8 720 aa12.59□□□□□ -0.39
VPS52-213ENST00000461743 ASB16Q96NS5 453 aa12.59□□□□□ -0.39
VPS52-213ENST00000461743 HNRNPABQ99729 332 aaKnown RBP12.59□□□□□ -0.39
VPS52-213ENST00000461743 ARID3AQ99856 593 aa12.59□□□□□ -0.39
VPS52-213ENST00000461743 BPIFA3Q9BQP9 254 aa12.59□□□□□ -0.39
VPS52-213ENST00000461743 MED10Q9BTT4 135 aa12.59□□□□□ -0.39
VPS52-213ENST00000461743 INTS2Q9H0H0 1204 aaKnown RBP12.59□□□□□ -0.39
VPS52-213ENST00000461743 CSNK1G1Q9HCP0 422 aa12.59□□□□□ -0.39
VPS52-213ENST00000461743 KRT82Q9NSB4 513 aa12.59□□□□□ -0.39
VPS52-213ENST00000461743 COMMD8Q9NX08 183 aa12.59□□□□□ -0.39
VPS52-213ENST00000461743 NUMBLQ9Y6R0 609 aa12.59□□□□□ -0.39
VPS52-213ENST00000461743 ZDBF2Q9HCK1 2354 aa12.59□□□□□ -0.39
VPS52-213ENST00000461743 KCNJ18B7U540 433 aa12.58□□□□□ -0.4
VPS52-213ENST00000461743 LRRN2O75325 713 aa12.58□□□□□ -0.4
VPS52-213ENST00000461743 AP1G2O75843 785 aa12.58□□□□□ -0.4
VPS52-213ENST00000461743 ASGR2P07307 311 aa12.58□□□□□ -0.4
VPS52-213ENST00000461743 PAEPP09466 180 aa12.58□□□□□ -0.4
VPS52-213ENST00000461743 SRFP11831 508 aa12.58□□□□□ -0.4
VPS52-213ENST00000461743 RFX1P22670 979 aa12.58□□□□□ -0.4
VPS52-213ENST00000461743 GPR15P49685 360 aa12.58□□□□□ -0.4
VPS52-213ENST00000461743 KCNJ12Q14500 433 aa12.58□□□□□ -0.4
VPS52-213ENST00000461743 TEAD2Q15562 447 aa12.58□□□□□ -0.4
VPS52-213ENST00000461743 SKOR2Q2VWA4 1001 aaPredicted RBP12.58□□□□□ -0.4
VPS52-213ENST00000461743 CDKAL1Q5VV42 579 aa12.58□□□□□ -0.4
VPS52-213ENST00000461743 ARHGAP17Q68EM7 881 aa12.58□□□□□ -0.4
VPS52-213ENST00000461743 PPM1KQ8N3J5 372 aa12.58□□□□□ -0.4
VPS52-213ENST00000461743 EHBP1Q8NDI1 1231 aa12.58□□□□□ -0.4
VPS52-213ENST00000461743 PDZD8Q8NEN9 1154 aa12.58□□□□□ -0.4
VPS52-213ENST00000461743 SLC2A14Q8TDB8 520 aa12.58□□□□□ -0.4
VPS52-213ENST00000461743 GIPC2Q8TF65 315 aa12.58□□□□□ -0.4
VPS52-213ENST00000461743 DEPDC1BQ8WUY9 529 aa12.58□□□□□ -0.4
VPS52-213ENST00000461743 MRPS31Q92665 395 aaKnown RBP12.58□□□□□ -0.4
VPS52-213ENST00000461743 KHSRPQ92945 711 aaKnown RBP eCLIP12.58□□□□□ -0.4
VPS52-213ENST00000461743 TATDN2Q93075 761 aa12.58□□□□□ -0.4
VPS52-213ENST00000461743 TMEM176AQ96HP8 235 aa12.58□□□□□ -0.4
VPS52-213ENST00000461743 TWNKQ96RR1 684 aa12.58□□□□□ -0.4
VPS52-213ENST00000461743 TUBGCP2Q9BSJ2 902 aa12.58□□□□□ -0.4
VPS52-213ENST00000461743 ATXN3LQ9H3M9 355 aa12.58□□□□□ -0.4
VPS52-213ENST00000461743 SLITRK6Q9H5Y7 841 aa12.58□□□□□ -0.4
VPS52-213ENST00000461743 TASP1Q9H6P5 420 aa12.58□□□□□ -0.4
VPS52-213ENST00000461743 KIF9Q9HAQ2 790 aa12.58□□□□□ -0.4
VPS52-213ENST00000461743 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.58□□□□□ -0.47e-8■■■■■ 186.3
VPS52-213ENST00000461743 OBP2AQ9NY56 170 aa12.58□□□□□ -0.4
VPS52-213ENST00000461743 KIAA1257Q9ULG3 409 aa12.58□□□□□ -0.4
VPS52-213ENST00000461743 GPR37L1O60883 481 aa12.57□□□□□ -0.4
VPS52-213ENST00000461743 TADA3O75528 432 aa12.57□□□□□ -0.4
VPS52-213ENST00000461743 F11P03951 625 aa12.57□□□□□ -0.4
VPS52-213ENST00000461743 TPM2P07951 284 aa12.57□□□□□ -0.4
VPS52-213ENST00000461743 CCDC130P13994 396 aa12.57□□□□□ -0.4
VPS52-213ENST00000461743 NPR3P17342 541 aa12.57□□□□□ -0.4
VPS52-213ENST00000461743 FCARP24071 287 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms