RNA–Protein interactions for RNA: ENST00000454240.1

SMARCC1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

TSL 3

Gene SMARCC1, Length 636 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-203ENST00000454240 FAM49BQ9NUQ9 324 aa29.73■■■□□ 2.35
SMARCC1-203ENST00000454240 ATP8B3O60423 1300 aa29.72■■■□□ 2.35
SMARCC1-203ENST00000454240 PES1O00541 588 aaKnown RBP29.72■■■□□ 2.35
SMARCC1-203ENST00000454240 ZNF197O14709 1029 aa29.72■■■□□ 2.35
SMARCC1-203ENST00000454240 TRIM66O15016 1216 aa29.72■■■□□ 2.35
SMARCC1-203ENST00000454240 MICAL2O94851 1124 aa29.72■■■□□ 2.35
SMARCC1-203ENST00000454240 HMGA1P17096 107 aaKnown RBP29.72■■■□□ 2.35
SMARCC1-203ENST00000454240 CCR2P41597 374 aa29.72■■■□□ 2.35
SMARCC1-203ENST00000454240 COPB1P53618 953 aaKnown RBP29.72■■■□□ 2.35
SMARCC1-203ENST00000454240 DPY19L2P1Q6NXN4 242 aa29.72■■■□□ 2.35
SMARCC1-203ENST00000454240 GET4Q7L5D6 327 aaPredicted RBP29.72■■■□□ 2.35
SMARCC1-203ENST00000454240 APTXQ7Z2E3 356 aaKnown RBP29.72■■■□□ 2.35
SMARCC1-203ENST00000454240 GJD3Q8N144 294 aa29.72■■■□□ 2.35
SMARCC1-203ENST00000454240 TDRD5Q8NAT2 981 aaKnown RBP29.72■■■□□ 2.35
SMARCC1-203ENST00000454240 SLC2A14Q8TDB8 520 aa29.72■■■□□ 2.35
SMARCC1-203ENST00000454240 ACSF2Q96CM8 615 aaPredicted RBP29.72■■■□□ 2.35
SMARCC1-203ENST00000454240 FAM81BQ96LP2 452 aa29.72■■■□□ 2.35
SMARCC1-203ENST00000454240 HEXIM2Q96MH2 286 aaKnown RBP29.72■■■□□ 2.35
SMARCC1-203ENST00000454240 MYADMQ96S97 322 aa29.72■■■□□ 2.35
SMARCC1-203ENST00000454240 MED10Q9BTT4 135 aa29.72■■■□□ 2.35
SMARCC1-203ENST00000454240 CBX8Q9HC52 389 aa29.72■■■□□ 2.35
SMARCC1-203ENST00000454240 ZNF334Q9HCZ1 680 aaPredicted RBP29.72■■■□□ 2.35
SMARCC1-203ENST00000454240 SIX2Q9NPC8 291 aa29.72■■■□□ 2.35
SMARCC1-203ENST00000454240 APEX2Q9UBZ4 518 aa29.72■■■□□ 2.35
SMARCC1-203ENST00000454240 MRPS23Q9Y3D9 190 aaKnown RBP29.72■■■□□ 2.35
SMARCC1-203ENST00000454240 ZNF638Q14966 1978 aaKnown RBP29.72■■■□□ 2.35
SMARCC1-203ENST00000454240 TPM2P07951 284 aa29.71■■■□□ 2.35
SMARCC1-203ENST00000454240 CSH1P0DML2 217 aa29.71■■■□□ 2.35
SMARCC1-203ENST00000454240 CSH2P0DML3 217 aa29.71■■■□□ 2.35
SMARCC1-203ENST00000454240 ATP1A3P13637 1013 aa29.71■■■□□ 2.35
SMARCC1-203ENST00000454240 APBA1Q02410 837 aa29.71■■■□□ 2.35
SMARCC1-203ENST00000454240 ENOSF1Q7L5Y1 443 aa29.71■■■□□ 2.35
SMARCC1-203ENST00000454240 ZDHHC14Q8IZN3 488 aa29.71■■■□□ 2.35
SMARCC1-203ENST00000454240 PLCD3Q8N3E9 789 aa29.71■■■□□ 2.35
SMARCC1-203ENST00000454240 TCEAL4Q96EI5 215 aa29.71■■■□□ 2.35
SMARCC1-203ENST00000454240 SMARCD1Q96GM5 515 aa29.71■■■□□ 2.35
SMARCC1-203ENST00000454240 PCDHB4Q9Y5E5 795 aa29.71■■■□□ 2.35
SMARCC1-203ENST00000454240 SLC38A8A6NNN8 435 aa29.7■■■□□ 2.35
SMARCC1-203ENST00000454240 BECN2A8MW95 431 aa29.7■■■□□ 2.35
SMARCC1-203ENST00000454240 F8VP50 259 aa29.7■■■□□ 2.35
SMARCC1-203ENST00000454240 NRG2O14511 850 aaPredicted RBP29.7■■■□□ 2.35
SMARCC1-203ENST00000454240 MOSPD3O75425 235 aa29.7■■■□□ 2.35
SMARCC1-203ENST00000454240 NOL4O94818 638 aa29.7■■■□□ 2.35
SMARCC1-203ENST00000454240 MYL4P12829 197 aa29.7■■■□□ 2.35
SMARCC1-203ENST00000454240 GBP2P32456 591 aaPredicted RBP29.7■■■□□ 2.35
SMARCC1-203ENST00000454240 MTMR3Q13615 1198 aa29.7■■■□□ 2.35
SMARCC1-203ENST00000454240 GJB7Q6PEY0 223 aa29.7■■■□□ 2.35
SMARCC1-203ENST00000454240 TMEM270Q6UE05 265 aa29.7■■■□□ 2.35
SMARCC1-203ENST00000454240 STKLD1Q8NE28 680 aa29.7■■■□□ 2.35
SMARCC1-203ENST00000454240 FGF13Q92913 245 aa29.7■■■□□ 2.35
SMARCC1-203ENST00000454240 COL25A1Q9BXS0 654 aaPredicted RBP29.7■■■□□ 2.35
SMARCC1-203ENST00000454240 EPS15L1Q9UBC2 864 aa29.7■■■□□ 2.35
SMARCC1-203ENST00000454240 CDH7Q9ULB5 785 aa29.7■■■□□ 2.35
SMARCC1-203ENST00000454240 CNTN6Q9UQ52 1028 aa29.7■■■□□ 2.35
SMARCC1-203ENST00000454240 MYO10Q9HD67 2058 aa29.7■■■□□ 2.34
SMARCC1-203ENST00000454240 OBSL1O75147 1896 aa29.7■■■□□ 2.34
SMARCC1-203ENST00000454240 RNF225M0QZC1 329 aaPredicted RBP29.69■■■□□ 2.34
SMARCC1-203ENST00000454240 MFAP3P55082 362 aa29.69■■■□□ 2.34
SMARCC1-203ENST00000454240 TAF12Q16514 161 aa29.69■■■□□ 2.34
SMARCC1-203ENST00000454240 PPP1R26Q5T8A7 1209 aaPredicted RBP29.69■■■□□ 2.34
SMARCC1-203ENST00000454240 MYRFLQ96LU7 910 aa29.69■■■□□ 2.34
SMARCC1-203ENST00000454240 KCNK16Q96T55 309 aa29.69■■■□□ 2.34
SMARCC1-203ENST00000454240 IL21Q9HBE4 155 aa29.69■■■□□ 2.34
SMARCC1-203ENST00000454240 CSNK1G1Q9HCP0 422 aa29.69■■■□□ 2.34
SMARCC1-203ENST00000454240 ZFP37Q9Y6Q3 630 aaPredicted RBP29.69■■■□□ 2.34
SMARCC1-203ENST00000454240 AP1G2O75843 785 aa29.68■■■□□ 2.34
SMARCC1-203ENST00000454240 FGF19O95750 216 aa29.68■■■□□ 2.34
SMARCC1-203ENST00000454240 LAMP2P13473 410 aa29.68■■■□□ 2.34
SMARCC1-203ENST00000454240 ANXA13P27216 316 aa29.68■■■□□ 2.34
SMARCC1-203ENST00000454240 SSTR3P32745 418 aaPredicted RBP29.68■■■□□ 2.34
SMARCC1-203ENST00000454240 ARHGAP17Q68EM7 881 aa29.68■■■□□ 2.34
SMARCC1-203ENST00000454240 GAREM2Q75VX8 874 aa29.68■■■□□ 2.34
SMARCC1-203ENST00000454240 NPAS3Q8IXF0 933 aa29.68■■■□□ 2.34
SMARCC1-203ENST00000454240 TRMT2BQ96GJ1 504 aaKnown RBP29.68■■■□□ 2.34
SMARCC1-203ENST00000454240 SMOQ99835 787 aa29.68■■■□□ 2.34
SMARCC1-203ENST00000454240 KRT82Q9NSB4 513 aa29.68■■■□□ 2.34
SMARCC1-203ENST00000454240 KIAA1257Q9ULG3 409 aa29.68■■■□□ 2.34
SMARCC1-203ENST00000454240 PATJQ8NI35 1801 aa29.68■■■□□ 2.34
SMARCC1-203ENST00000454240 BEST1O76090 585 aa29.67■■■□□ 2.34
SMARCC1-203ENST00000454240 PAEPP09466 180 aa29.67■■■□□ 2.34
SMARCC1-203ENST00000454240 CEBPBP17676 345 aa29.67■■■□□ 2.34
SMARCC1-203ENST00000454240 ADORA2BP29275 332 aa29.67■■■□□ 2.34
SMARCC1-203ENST00000454240 ZNF132P52740 706 aa29.67■■■□□ 2.34
SMARCC1-203ENST00000454240 POTEHQ6S545 545 aa29.67■■■□□ 2.34
SMARCC1-203ENST00000454240 LUZP1Q86V48 1076 aa29.67■■■□□ 2.34
SMARCC1-203ENST00000454240 ZMIZ2Q8NF64 920 aa29.67■■■□□ 2.34
SMARCC1-203ENST00000454240 SHKBP1Q8TBC3 707 aa29.67■■■□□ 2.34
SMARCC1-203ENST00000454240 ING5Q8WYH8 240 aa29.67■■■□□ 2.34
SMARCC1-203ENST00000454240 DMAP1Q9NPF5 467 aaPredicted RBP29.67■■■□□ 2.34
SMARCC1-203ENST00000454240 NCOR1O75376 2440 aa29.67■■■□□ 2.34
SMARCC1-203ENST00000454240 LGALS16A8MUM7 142 aa29.66■■■□□ 2.34
SMARCC1-203ENST00000454240 FAM200BP0CF97 657 aa29.66■■■□□ 2.34
SMARCC1-203ENST00000454240 GJA1P17302 382 aa29.66■■■□□ 2.34
SMARCC1-203ENST00000454240 GABRR2P28476 465 aa29.66■■■□□ 2.34
SMARCC1-203ENST00000454240 FKBP15Q5T1M5 1219 aa29.66■■■□□ 2.34
SMARCC1-203ENST00000454240 SMYD5Q6GMV2 418 aa29.66■■■□□ 2.34
SMARCC1-203ENST00000454240 LRSAM1Q6UWE0 723 aa29.66■■■□□ 2.34
SMARCC1-203ENST00000454240 DENND5BQ6ZUT9 1274 aa29.66■■■□□ 2.34
SMARCC1-203ENST00000454240 RBBP8NLQ8NC74 664 aaPredicted RBP29.66■■■□□ 2.34
SMARCC1-203ENST00000454240 GDE1Q9NZC3 331 aa29.66■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms