RNA–Protein interactions for RNA: ENST00000448238.2

NIPBL-202, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 1 (best) BASIC

Gene NIPBL, Length 8,729 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-202ENST00000448238 SPTLC3Q9NUV7 552 aa9.25□□□□□ -0.93
NIPBL-202ENST00000448238 AHSPQ9NZD4 102 aa9.25□□□□□ -0.93
NIPBL-202ENST00000448238 LSM7Q9UK45 103 aaKnown RBP9.25□□□□□ -0.93
NIPBL-202ENST00000448238 KIAA0100Q14667 2235 aaKnown RBP9.25□□□□□ -0.93
NIPBL-202ENST00000448238 IL12AP29459 219 aa9.25□□□□□ -0.93
NIPBL-202ENST00000448238 RAP1GAPP47736 663 aa9.25□□□□□ -0.93
NIPBL-202ENST00000448238 ARSEP51690 589 aa9.25□□□□□ -0.93
NIPBL-202ENST00000448238 IL5RAQ01344 420 aa9.25□□□□□ -0.93
NIPBL-202ENST00000448238 PTSQ03393 145 aa9.25□□□□□ -0.93
NIPBL-202ENST00000448238 STK4Q13043 487 aa9.25□□□□□ -0.93
NIPBL-202ENST00000448238 BIKQ13323 160 aa9.25□□□□□ -0.93
NIPBL-202ENST00000448238 LLGL1Q15334 1064 aa9.25□□□□□ -0.93
NIPBL-202ENST00000448238 DPP8Q6V1X1 898 aaPredicted RBP9.25□□□□□ -0.93
NIPBL-202ENST00000448238 TRPV1Q8NER1 839 aa9.25□□□□□ -0.93
NIPBL-202ENST00000448238 RP9Q8TA86 221 aaKnown RBP9.25□□□□□ -0.93
NIPBL-202ENST00000448238 NDST4Q9H3R1 872 aa9.25□□□□□ -0.93
NIPBL-202ENST00000448238 CAMSAP3Q9P1Y5 1249 aaPredicted RBP9.25□□□□□ -0.93
NIPBL-202ENST00000448238 DUSP12Q9UNI6 340 aa9.25□□□□□ -0.93
NIPBL-202ENST00000448238 C15orf38-AP3S2A0A0A6YYH1 394 aa9.25□□□□□ -0.93
NIPBL-202ENST00000448238 ATP6V1B2P21281 511 aa9.25□□□□□ -0.93
NIPBL-202ENST00000448238 CCNG2Q16589 344 aa9.25□□□□□ -0.93
NIPBL-202ENST00000448238 SCN4BQ8IWT1 228 aa9.25□□□□□ -0.93
NIPBL-202ENST00000448238 PM20D2Q8IYS1 436 aa9.25□□□□□ -0.93
NIPBL-202ENST00000448238 RTKN2Q8IZC4 609 aa9.25□□□□□ -0.93
NIPBL-202ENST00000448238 CECR2Q9BXF3 1484 aa9.25□□□□□ -0.93
NIPBL-202ENST00000448238 HEATR9A2RTY3 570 aa9.25□□□□□ -0.93
NIPBL-202ENST00000448238 TMEM114B3SHH9 223 aa9.25□□□□□ -0.93
NIPBL-202ENST00000448238 FAM20BO75063 409 aa9.25□□□□□ -0.93
NIPBL-202ENST00000448238 HIST1H2ABP04908 130 aa9.25□□□□□ -0.93
NIPBL-202ENST00000448238 STAT3P40763 770 aa9.25□□□□□ -0.93
NIPBL-202ENST00000448238 IZUMO3Q5VZ72 239 aa9.25□□□□□ -0.93
NIPBL-202ENST00000448238 GTF2IRD2BQ6EKJ0 949 aa9.25□□□□□ -0.93
NIPBL-202ENST00000448238 HIST3H2AQ7L7L0 130 aa9.25□□□□□ -0.93
NIPBL-202ENST00000448238 GTF2IRD2Q86UP8 949 aa9.25□□□□□ -0.93
NIPBL-202ENST00000448238 OR7A2PQ8NGA2 310 aa9.25□□□□□ -0.93
NIPBL-202ENST00000448238 KBTBD7Q8WVZ9 684 aa9.25□□□□□ -0.93
NIPBL-202ENST00000448238 HIST1H2ACQ93077 130 aa9.25□□□□□ -0.93
NIPBL-202ENST00000448238 SPON2Q9BUD6 331 aa9.25□□□□□ -0.93
NIPBL-202ENST00000448238 MSTO1Q9BUK6 570 aa9.25□□□□□ -0.93
NIPBL-202ENST00000448238 ROGDIQ9GZN7 287 aa9.25□□□□□ -0.93
NIPBL-202ENST00000448238 PADI4Q9UM07 663 aa9.25□□□□□ -0.93
NIPBL-202ENST00000448238 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.25□□□□□ -0.935e-7■□□□□ 8.4
NIPBL-202ENST00000448238 RGSL1A5PLK6 1076 aa9.25□□□□□ -0.93
NIPBL-202ENST00000448238 LOC110117498-PIK3R3F6TDL0 507 aa9.25□□□□□ -0.93
NIPBL-202ENST00000448238 MAGEB3O15480 346 aa9.25□□□□□ -0.93
NIPBL-202ENST00000448238 OR6A2O95222 327 aa9.25□□□□□ -0.93
NIPBL-202ENST00000448238 HK2P52789 917 aa9.25□□□□□ -0.93
NIPBL-202ENST00000448238 MYBPC3Q14896 1274 aa9.25□□□□□ -0.93
NIPBL-202ENST00000448238 CERKLQ49MI3 558 aaPredicted RBP9.25□□□□□ -0.93
NIPBL-202ENST00000448238 LRRC71Q8N4P6 559 aa9.25□□□□□ -0.93
NIPBL-202ENST00000448238 UTP15Q8TED0 518 aaKnown RBP9.25□□□□□ -0.93
NIPBL-202ENST00000448238 PIK3R3Q92569 461 aa9.25□□□□□ -0.93
NIPBL-202ENST00000448238 ROPN1BQ9BZX4 212 aaPredicted RBP9.25□□□□□ -0.93
NIPBL-202ENST00000448238 ROPN1Q9HAT0 212 aaPredicted RBP9.25□□□□□ -0.93
NIPBL-202ENST00000448238 MIEF1Q9NQG6 463 aa9.25□□□□□ -0.93
NIPBL-202ENST00000448238 PRDM8Q9NQV8 689 aa9.25□□□□□ -0.93
NIPBL-202ENST00000448238 THRAP3Q9Y2W1 955 aaKnown RBP9.25□□□□□ -0.93
NIPBL-202ENST00000448238 WDR7Q9Y4E6 1490 aa9.25□□□□□ -0.93
NIPBL-202ENST00000448238 DHX15O43143 795 aaKnown RBP9.24□□□□□ -0.93
NIPBL-202ENST00000448238 PHF2O75151 1096 aa9.24□□□□□ -0.93
NIPBL-202ENST00000448238 RPS6KA5O75582 802 aa9.24□□□□□ -0.93
NIPBL-202ENST00000448238 RGS8P57771 180 aaPredicted RBP9.24□□□□□ -0.93
NIPBL-202ENST00000448238 AGBL2Q5U5Z8 902 aa9.24□□□□□ -0.93
NIPBL-202ENST00000448238 GADL1Q6ZQY3 521 aa9.24□□□□□ -0.93
NIPBL-202ENST00000448238 ZSCAN18Q8TBC5 510 aaPredicted RBP9.24□□□□□ -0.93
NIPBL-202ENST00000448238 TBCDQ9BTW9 1192 aa9.24□□□□□ -0.93
NIPBL-202ENST00000448238 MYRFQ9Y2G1 1151 aa9.24□□□□□ -0.93
NIPBL-202ENST00000448238 C2orf71A6NGG8 1288 aa9.24□□□□□ -0.93
NIPBL-202ENST00000448238 CLDN3O15551 220 aa9.24□□□□□ -0.93
NIPBL-202ENST00000448238 TCEA3O75764 348 aa9.24□□□□□ -0.93
NIPBL-202ENST00000448238 CD2BP2O95400 341 aaKnown RBP9.24□□□□□ -0.93
NIPBL-202ENST00000448238 CDH4P55283 916 aa9.24□□□□□ -0.93
NIPBL-202ENST00000448238 USP10Q14694 798 aaKnown RBP9.24□□□□□ -0.93
NIPBL-202ENST00000448238 LRIG3Q6UXM1 1119 aa9.24□□□□□ -0.93
NIPBL-202ENST00000448238 ZNF614Q8N883 585 aa9.24□□□□□ -0.93
NIPBL-202ENST00000448238 PNMA1Q8ND90 353 aa9.24□□□□□ -0.93
NIPBL-202ENST00000448238 MCPH1Q8NEM0 835 aa9.24□□□□□ -0.93
NIPBL-202ENST00000448238 CCDC17Q96LX7 622 aa9.24□□□□□ -0.93
NIPBL-202ENST00000448238 UHRF1BP1Q6BDS2 1440 aa9.24□□□□□ -0.93
NIPBL-202ENST00000448238 FARP2O94887 1054 aaPredicted RBP9.24□□□□□ -0.93
NIPBL-202ENST00000448238 CAMK2GQ13555 558 aaPredicted RBP9.24□□□□□ -0.93
NIPBL-202ENST00000448238 HS6ST3Q8IZP7 471 aa9.24□□□□□ -0.93
NIPBL-202ENST00000448238 TBATAQ96M53 351 aa9.24□□□□□ -0.93
NIPBL-202ENST00000448238 RPAP1Q9BWH6 1393 aaPredicted RBP9.24□□□□□ -0.93
NIPBL-202ENST00000448238 EPB41L4AQ9HCS5 686 aaPredicted RBP9.24□□□□□ -0.93
NIPBL-202ENST00000448238 NEUROD4Q9HD90 331 aa9.24□□□□□ -0.93
NIPBL-202ENST00000448238 ARL5CA6NH57 179 aa9.24□□□□□ -0.93
NIPBL-202ENST00000448238 OMPP47874 163 aa9.24□□□□□ -0.93
NIPBL-202ENST00000448238 PDX1P52945 283 aa9.24□□□□□ -0.93
NIPBL-202ENST00000448238 NCAPHQ15003 741 aa9.24□□□□□ -0.93
NIPBL-202ENST00000448238 BARGINQ6ZT62 677 aa9.24□□□□□ -0.93
NIPBL-202ENST00000448238 TMEM26Q6ZUK4 368 aa9.24□□□□□ -0.93
NIPBL-202ENST00000448238 TRPC4APQ8TEL6 797 aa9.24□□□□□ -0.93
NIPBL-202ENST00000448238 SLC20A1Q8WUM9 679 aa9.24□□□□□ -0.93
NIPBL-202ENST00000448238 SKA1Q96BD8 255 aa9.24□□□□□ -0.93
NIPBL-202ENST00000448238 WDR12Q9GZL7 423 aaKnown RBP9.24□□□□□ -0.93
NIPBL-202ENST00000448238 CYLDQ9NQC7 956 aa9.24□□□□□ -0.93
NIPBL-202ENST00000448238 LNPEPQ9UIQ6 1025 aa9.24□□□□□ -0.93
NIPBL-202ENST00000448238 LRCH1Q9Y2L9 728 aa9.24□□□□□ -0.93
NIPBL-202ENST00000448238 SFI1A8K8P3 1242 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms