RNA–Protein interactions for RNA: ENST00000441602.5

VPS50-205, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,474 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-205ENST00000441602 MARCKSL1P49006 195 aa6.34□□□□□ -1.4
VPS50-205ENST00000441602 SCNN1GP51170 649 aa6.34□□□□□ -1.4
VPS50-205ENST00000441602 DRG2P55039 364 aaKnown RBP6.34□□□□□ -1.4
VPS50-205ENST00000441602 TSPY1Q01534 308 aa6.34□□□□□ -1.4
VPS50-205ENST00000441602 SLC6A3Q01959 620 aa6.34□□□□□ -1.4
VPS50-205ENST00000441602 C2CD6Q53TS8 623 aa6.34□□□□□ -1.4
VPS50-205ENST00000441602 CCDC137Q6PK04 289 aaKnown RBP6.34□□□□□ -1.4
VPS50-205ENST00000441602 ADAT2Q7Z6V5 191 aaKnown RBP6.34□□□□□ -1.4
VPS50-205ENST00000441602 ECHDC2Q86YB7 292 aa6.34□□□□□ -1.4
VPS50-205ENST00000441602 SIX6OS1Q8N1H7 587 aa6.34□□□□□ -1.4
VPS50-205ENST00000441602 ATL2Q8NHH9 583 aa6.34□□□□□ -1.4
VPS50-205ENST00000441602 TRAF3IP1Q8TDR0 691 aaPredicted RBP6.34□□□□□ -1.4
VPS50-205ENST00000441602 CCDC114Q96M63 670 aa6.34□□□□□ -1.4
VPS50-205ENST00000441602 CPXM1Q96SM3 734 aa6.34□□□□□ -1.4
VPS50-205ENST00000441602 TBCBQ99426 244 aa6.34□□□□□ -1.4
VPS50-205ENST00000441602 HNRNPABQ99729 332 aaKnown RBP6.34□□□□□ -1.4
VPS50-205ENST00000441602 SYT15Q9BQS2 421 aa6.34□□□□□ -1.4
VPS50-205ENST00000441602 ERP44Q9BS26 406 aa6.34□□□□□ -1.4
VPS50-205ENST00000441602 SLC4A5Q9BY07 1137 aa6.34□□□□□ -1.4
VPS50-205ENST00000441602 LRRC19Q9H756 370 aa6.34□□□□□ -1.4
VPS50-205ENST00000441602 TMEM51Q9NW97 253 aa6.34□□□□□ -1.4
VPS50-205ENST00000441602 HMGXB4Q9UGU5 601 aa6.34□□□□□ -1.4
VPS50-205ENST00000441602 ASIC3Q9UHC3 531 aa6.34□□□□□ -1.4
VPS50-205ENST00000441602 AMACRQ9UHK6 382 aa6.34□□□□□ -1.4
VPS50-205ENST00000441602 INPP5FQ9Y2H2 1132 aa6.34□□□□□ -1.4
VPS50-205ENST00000441602 GOLGA6BA6NDN3 693 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 DNM1LO00429 736 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 PTGESO14684 152 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 MAP2K7O14733 419 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 PPEF2O14830 753 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 XPO1O14980 1071 aaKnown RBP6.33□□□□□ -1.4
VPS50-205ENST00000441602 TTI1O43156 1089 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 PTPN1P18031 435 aaKnown RBP6.33□□□□□ -1.4
VPS50-205ENST00000441602 HOXD11P31277 338 aaPredicted RBP6.33□□□□□ -1.4
VPS50-205ENST00000441602 ZNF143P52747 638 aaPredicted RBP6.33□□□□□ -1.4
VPS50-205ENST00000441602 FAM193AP78312 1265 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 KRT81Q14533 505 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 CCNG2Q16589 344 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 TRIM71Q2Q1W2 868 aaKnown RBP6.33□□□□□ -1.4
VPS50-205ENST00000441602 BOLA3Q53S33 107 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 PPP1R15BQ5SWA1 713 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 ZNF618Q5T7W0 954 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 DCAF12L1Q5VU92 463 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 DCLRE1AQ6PJP8 1040 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 SPOCD1Q6ZMY3 1216 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 SLC24A5Q71RS6 500 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 WDTC1Q8N5D0 677 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 B3GALNT2Q8NCR0 500 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 FAM71BQ8TC56 605 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 ZNF296Q8WUU4 475 aaPredicted RBP6.33□□□□□ -1.4
VPS50-205ENST00000441602 CASKIN2Q8WXE0 1202 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 APBB2Q92870 758 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 FOXP3Q9BZS1 431 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 DPH5Q9H2P9 285 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 PRDM16Q9HAZ2 1276 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 STAP1Q9ULZ2 295 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 NFU1Q9UMS0 254 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 ANK1P16157 1881 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 TCRBV5S1A1TA0A578 114 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 ARL5CA6NH57 179 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 ATF2P15336 505 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 TYMPP19971 482 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 RGS7P49802 495 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 CDR1P51861 262 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 PDE4CQ08493 712 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 PPP1R26Q5T8A7 1209 aaPredicted RBP6.33□□□□□ -1.4
VPS50-205ENST00000441602 LRRC8DQ7L1W4 858 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 GSTA5Q7RTV2 222 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 TMEM110Q86TL2 294 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 MREGQ8N565 214 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 PRELID2Q8N945 189 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 CCDC89Q8N998 374 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 KCTD6Q8NC69 237 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 RXFP2Q8WXD0 754 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 RNF25Q96BH1 459 aaPredicted RBP6.33□□□□□ -1.4
VPS50-205ENST00000441602 DCLK3Q9C098 648 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 AGO3Q9H9G7 860 aaKnown RBP6.33□□□□□ -1.4
VPS50-205ENST00000441602 TRMT13Q9NUP7 481 aaKnown RBP6.33□□□□□ -1.4
VPS50-205ENST00000441602 ZNF446Q9NWS9 450 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 DDX43Q9NXZ2 648 aaKnown RBP6.33□□□□□ -1.4
VPS50-205ENST00000441602 E5RJQ4 531 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 GLI1P08151 1106 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 RARAP10276 462 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 RALAP11233 206 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 CKBP12277 381 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 RFC1P35251 1148 aaPredicted RBP6.33□□□□□ -1.4
VPS50-205ENST00000441602 TAS2R40P59535 323 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 RPL7AP62424 266 aaKnown RBP6.33□□□□□ -1.4
VPS50-205ENST00000441602 RNASELQ05823 741 aaKnown RBP6.33□□□□□ -1.4
VPS50-205ENST00000441602 SLMAPQ14BN4 828 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 PDK2Q15119 407 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 GLIPR1L2Q4G1C9 344 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 TFDP3Q5H9I0 405 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 SPDYCQ5MJ68 293 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 WSCD1Q658N2 575 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 AGMOQ6ZNB7 445 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 FAM183BPQ6ZVS7 135 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 RFX6Q8HWS3 928 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 SLC43A3Q8NBI5 491 aa6.33□□□□□ -1.4
VPS50-205ENST00000441602 SLCO2A1Q92959 643 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms