RNA–Protein interactions for RNA: ENST00000438773.2

TRAPPC9-202, Transcript of trafficking protein particle complex 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAPPC9, Length 4,297 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC9-202ENST00000438773 VCPIP1Q96JH7 1222 aa12.11□□□□□ -0.47
TRAPPC9-202ENST00000438773 TTC25Q96NG3 672 aa12.11□□□□□ -0.47
TRAPPC9-202ENST00000438773 SMIM10L2AP0DMW4 78 aa12.11□□□□□ -0.47
TRAPPC9-202ENST00000438773 SMIM10L2BP0DMW5 78 aa12.11□□□□□ -0.47
TRAPPC9-202ENST00000438773 GHRP10912 638 aa12.11□□□□□ -0.47
TRAPPC9-202ENST00000438773 ARF4P18085 180 aaPredicted RBP12.11□□□□□ -0.47
TRAPPC9-202ENST00000438773 SP3Q02447 781 aa12.11□□□□□ -0.47
TRAPPC9-202ENST00000438773 BOLA3Q53S33 107 aa12.11□□□□□ -0.47
TRAPPC9-202ENST00000438773 ZNF572Q7Z3I7 529 aaPredicted RBP12.11□□□□□ -0.47
TRAPPC9-202ENST00000438773 ARRDC4Q8NCT1 418 aa12.11□□□□□ -0.47
TRAPPC9-202ENST00000438773 MDM1Q8TC05 714 aa12.11□□□□□ -0.47
TRAPPC9-202ENST00000438773 FBXO25Q8TCJ0 367 aa12.11□□□□□ -0.47
TRAPPC9-202ENST00000438773 ZBED3Q96IU2 234 aaPredicted RBP12.11□□□□□ -0.47
TRAPPC9-202ENST00000438773 TSPAN16Q9UKR8 245 aa12.11□□□□□ -0.47
TRAPPC9-202ENST00000438773 MROH7Q68CQ1 1323 aa12.11□□□□□ -0.47
TRAPPC9-202ENST00000438773 NAV1Q8NEY1 1877 aa12.11□□□□□ -0.47
TRAPPC9-202ENST00000438773 PDE4DIPQ5VU43 2346 aa12.11□□□□□ -0.47
TRAPPC9-202ENST00000438773 ARHGAP42A6NI28 874 aa12.11□□□□□ -0.47
TRAPPC9-202ENST00000438773 CHUKO15111 745 aa12.11□□□□□ -0.47
TRAPPC9-202ENST00000438773 SMIM24O75264 130 aa12.11□□□□□ -0.47
TRAPPC9-202ENST00000438773 DEUP1Q05D60 604 aa12.11□□□□□ -0.47
TRAPPC9-202ENST00000438773 RCN2Q14257 317 aa12.11□□□□□ -0.47
TRAPPC9-202ENST00000438773 SKIV2LQ15477 1246 aaKnown RBP12.11□□□□□ -0.47
TRAPPC9-202ENST00000438773 SMAD1Q15797 465 aaKnown RBP12.11□□□□□ -0.47
TRAPPC9-202ENST00000438773 CDKL3Q8IVW4 592 aaPredicted RBP12.11□□□□□ -0.47
TRAPPC9-202ENST00000438773 ADGRF2Q8IZF7 708 aa12.11□□□□□ -0.47
TRAPPC9-202ENST00000438773 BBS5Q8N3I7 341 aa12.11□□□□□ -0.47
TRAPPC9-202ENST00000438773 GDF3Q9NR23 364 aa12.11□□□□□ -0.47
TRAPPC9-202ENST00000438773 RAB6BQ9NRW1 208 aa12.11□□□□□ -0.47
TRAPPC9-202ENST00000438773 NRAPQ86VF7 1730 aa12.1□□□□□ -0.47
TRAPPC9-202ENST00000438773 FKTNO75072 461 aa12.1□□□□□ -0.47
TRAPPC9-202ENST00000438773 UPP2O95045 317 aa12.1□□□□□ -0.47
TRAPPC9-202ENST00000438773 APRTP07741 180 aa12.1□□□□□ -0.47
TRAPPC9-202ENST00000438773 ACO1P21399 889 aaKnown RBP12.1□□□□□ -0.47
TRAPPC9-202ENST00000438773 ADSSP30520 456 aa12.1□□□□□ -0.47
TRAPPC9-202ENST00000438773 CENPCQ03188 943 aa12.1□□□□□ -0.47
TRAPPC9-202ENST00000438773 KYNUQ16719 465 aa12.1□□□□□ -0.47
TRAPPC9-202ENST00000438773 TSNAXIP1Q2TAA8 658 aa12.1□□□□□ -0.47
TRAPPC9-202ENST00000438773 EFHC1Q5JVL4 640 aa12.1□□□□□ -0.47
TRAPPC9-202ENST00000438773 RASIP1Q5U651 963 aa12.1□□□□□ -0.47
TRAPPC9-202ENST00000438773 KDM7AQ6ZMT4 941 aa12.1□□□□□ -0.47
TRAPPC9-202ENST00000438773 REM2Q8IYK8 340 aaPredicted RBP12.1□□□□□ -0.47
TRAPPC9-202ENST00000438773 AVENQ9NQS1 362 aaPredicted RBP12.1□□□□□ -0.47
TRAPPC9-202ENST00000438773 SCN7AQ01118 1682 aa12.1□□□□□ -0.47
TRAPPC9-202ENST00000438773 ITGA8P53708 1063 aa12.1□□□□□ -0.47
TRAPPC9-202ENST00000438773 PPP2R2AP63151 447 aa12.1□□□□□ -0.47
TRAPPC9-202ENST00000438773 SWT1Q5T5J6 900 aaKnown RBP12.1□□□□□ -0.47
TRAPPC9-202ENST00000438773 PID1Q7Z2X4 250 aa12.1□□□□□ -0.47
TRAPPC9-202ENST00000438773 ANKMY2Q8IV38 441 aa12.1□□□□□ -0.47
TRAPPC9-202ENST00000438773 BRI3BPQ8WY22 251 aa12.1□□□□□ -0.47
TRAPPC9-202ENST00000438773 CXorf56Q9H5V9 222 aa12.1□□□□□ -0.47
TRAPPC9-202ENST00000438773 LRRC4CQ9HCJ2 640 aa12.1□□□□□ -0.47
TRAPPC9-202ENST00000438773 MAP3K6O95382 1288 aa12.1□□□□□ -0.47
TRAPPC9-202ENST00000438773 BRAFP15056 766 aa12.1□□□□□ -0.47
TRAPPC9-202ENST00000438773 MDH1P40925 334 aaKnown RBP12.1□□□□□ -0.47
TRAPPC9-202ENST00000438773 TAF11Q15544 211 aa12.1□□□□□ -0.47
TRAPPC9-202ENST00000438773 ASTE1Q2TB18 679 aaPredicted RBP12.1□□□□□ -0.47
TRAPPC9-202ENST00000438773 CFAP61Q8NHU2 1237 aa12.1□□□□□ -0.47
TRAPPC9-202ENST00000438773 RXFP2Q8WXD0 754 aa12.1□□□□□ -0.47
TRAPPC9-202ENST00000438773 CRYGNQ8WXF5 182 aa12.1□□□□□ -0.47
TRAPPC9-202ENST00000438773 RNF208Q9H0X6 261 aa12.1□□□□□ -0.47
TRAPPC9-202ENST00000438773 SMYD3Q9H7B4 428 aa12.1□□□□□ -0.47
TRAPPC9-202ENST00000438773 NEU2Q9Y3R4 380 aa12.1□□□□□ -0.47
TRAPPC9-202ENST00000438773 TIMM13Q9Y5L4 95 aaPredicted RBP12.1□□□□□ -0.47
TRAPPC9-202ENST00000438773 SHANK3Q9BYB0 1731 aa12.1□□□□□ -0.47
TRAPPC9-202ENST00000438773 SLX4Q8IY92 1834 aa12.1□□□□□ -0.47
TRAPPC9-202ENST00000438773 CASTOR2A6NHX0 329 aa12.09□□□□□ -0.47
TRAPPC9-202ENST00000438773 ENO4A6NNW6 628 aa12.09□□□□□ -0.47
TRAPPC9-202ENST00000438773 DCDC2CA8MYV0 355 aa12.09□□□□□ -0.47
TRAPPC9-202ENST00000438773 AP1G2O75843 785 aa12.09□□□□□ -0.47
TRAPPC9-202ENST00000438773 SUN1O94901 812 aa12.09□□□□□ -0.47
TRAPPC9-202ENST00000438773 STAMBPO95630 424 aa12.09□□□□□ -0.47
TRAPPC9-202ENST00000438773 ASS1P00966 412 aaKnown RBP12.09□□□□□ -0.47
TRAPPC9-202ENST00000438773 ZBTB48P10074 688 aaPredicted RBP12.09□□□□□ -0.47
TRAPPC9-202ENST00000438773 FLT3P36888 993 aa12.09□□□□□ -0.47
TRAPPC9-202ENST00000438773 GARSP41250 739 aaKnown RBP12.09□□□□□ -0.47
TRAPPC9-202ENST00000438773 FSTL1Q12841 308 aa12.09□□□□□ -0.47
TRAPPC9-202ENST00000438773 QPCTQ16769 361 aa12.09□□□□□ -0.47
TRAPPC9-202ENST00000438773 PPM1NQ8N819 430 aa12.09□□□□□ -0.47
TRAPPC9-202ENST00000438773 ATP11CQ8NB49 1132 aa12.09□□□□□ -0.47
TRAPPC9-202ENST00000438773 HIPK4Q8NE63 616 aa12.09□□□□□ -0.47
TRAPPC9-202ENST00000438773 SLC7A14Q8TBB6 771 aa12.09□□□□□ -0.47
TRAPPC9-202ENST00000438773 HASPINQ8TF76 798 aa12.09□□□□□ -0.47
TRAPPC9-202ENST00000438773 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.09□□□□□ -0.471e-6■■■■□ 26.4
TRAPPC9-202ENST00000438773 COL2A1P02458 1487 aaPredicted RBP12.09□□□□□ -0.47
TRAPPC9-202ENST00000438773 GMNCA6NCL1 334 aa12.09□□□□□ -0.47
TRAPPC9-202ENST00000438773 SLC8A1P32418 973 aa12.09□□□□□ -0.47
TRAPPC9-202ENST00000438773 HOXD13P35453 343 aa12.09□□□□□ -0.47
TRAPPC9-202ENST00000438773 BCAT1P54687 386 aa12.09□□□□□ -0.47
TRAPPC9-202ENST00000438773 TPI1P60174 286 aa12.09□□□□□ -0.47
TRAPPC9-202ENST00000438773 MAP3K10Q02779 954 aa12.09□□□□□ -0.47
TRAPPC9-202ENST00000438773 TFDP3Q5H9I0 405 aa12.09□□□□□ -0.47
TRAPPC9-202ENST00000438773 EXD1Q8NHP7 514 aa12.09□□□□□ -0.47
TRAPPC9-202ENST00000438773 MAML3Q96JK9 1138 aa12.09□□□□□ -0.47
TRAPPC9-202ENST00000438773 CNPY3Q9BT09 278 aa12.09□□□□□ -0.47
TRAPPC9-202ENST00000438773 KLC4Q9NSK0 619 aa12.09□□□□□ -0.47
TRAPPC9-202ENST00000438773 NR2E3Q9Y5X4 410 aa12.09□□□□□ -0.47
TRAPPC9-202ENST00000438773 RBAK-RBAKDNI3L0D1 243 aa12.09□□□□□ -0.47
TRAPPC9-202ENST00000438773 ARIH2O95376 493 aa12.09□□□□□ -0.47
TRAPPC9-202ENST00000438773 LCA5LO95447 670 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms