RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 MYO1CO00159 1063 aa12.52□□□□□ -0.41
CCDC88A-207ENST00000436346 ENO3P13929 434 aaPredicted RBP12.52□□□□□ -0.41
CCDC88A-207ENST00000436346 GRK3P35626 688 aa12.52□□□□□ -0.41
CCDC88A-207ENST00000436346 VPS37AQ8NEZ2 397 aa12.52□□□□□ -0.41
CCDC88A-207ENST00000436346 DIS3LQ8TF46 1054 aaKnown RBP12.52□□□□□ -0.41
CCDC88A-207ENST00000436346 PNMA8BQ9ULN7 279 aaPredicted RBP12.52□□□□□ -0.41
CCDC88A-207ENST00000436346 SLIT1O75093 1534 aa12.52□□□□□ -0.41
CCDC88A-207ENST00000436346 PCYT1AP49585 367 aa12.52□□□□□ -0.41
CCDC88A-207ENST00000436346 EZH2Q15910 746 aaKnown RBP12.52□□□□□ -0.41
CCDC88A-207ENST00000436346 PCYOX1LQ8NBM8 494 aa12.52□□□□□ -0.41
CCDC88A-207ENST00000436346 FBXO2Q9UK22 296 aaPredicted RBP12.52□□□□□ -0.41
CCDC88A-207ENST00000436346 GOLGA8TH3BQL2 631 aa12.52□□□□□ -0.41
CCDC88A-207ENST00000436346 MTSS1O43312 755 aa12.52□□□□□ -0.41
CCDC88A-207ENST00000436346 HNRNPRO43390 633 aaKnown RBP12.52□□□□□ -0.41
CCDC88A-207ENST00000436346 EFEMP1Q12805 493 aa12.52□□□□□ -0.41
CCDC88A-207ENST00000436346 IYDQ6PHW0 289 aa12.52□□□□□ -0.41
CCDC88A-207ENST00000436346 ADCK1Q86TW2 530 aa12.52□□□□□ -0.41
CCDC88A-207ENST00000436346 FAM136AQ96C01 138 aa12.52□□□□□ -0.41
CCDC88A-207ENST00000436346 PCM1Q15154 2024 aa12.52□□□□□ -0.41
CCDC88A-207ENST00000436346 P4HA2O15460 535 aa12.52□□□□□ -0.41
CCDC88A-207ENST00000436346 EGFRP00533 1210 aa12.52□□□□□ -0.41
CCDC88A-207ENST00000436346 CARSP49589 748 aaKnown RBP12.52□□□□□ -0.41
CCDC88A-207ENST00000436346 BTKQ06187 659 aa12.52□□□□□ -0.41
CCDC88A-207ENST00000436346 ANGPT1Q15389 498 aa12.52□□□□□ -0.41
CCDC88A-207ENST00000436346 CDY2AQ9Y6F7 541 aa12.52□□□□□ -0.41
CCDC88A-207ENST00000436346 CDY1Q9Y6F8 540 aa12.52□□□□□ -0.41
CCDC88A-207ENST00000436346 MYMKA6NI61 221 aa12.52□□□□□ -0.41
CCDC88A-207ENST00000436346 CYB561D2O14569 222 aa12.52□□□□□ -0.41
CCDC88A-207ENST00000436346 RHOBTB1O94844 696 aa12.52□□□□□ -0.41
CCDC88A-207ENST00000436346 VPS50Q96JG6 964 aa12.52□□□□□ -0.41
CCDC88A-207ENST00000436346 COPS7BQ9H9Q2 264 aaPredicted RBP12.52□□□□□ -0.41
CCDC88A-207ENST00000436346 SVILO95425 2214 aa12.51□□□□□ -0.41
CCDC88A-207ENST00000436346 OTOFQ9HC10 1997 aa12.51□□□□□ -0.41
CCDC88A-207ENST00000436346 NUP214P35658 2090 aaPredicted RBP12.51□□□□□ -0.41
CCDC88A-207ENST00000436346 LRRIQ3A6PVS8 624 aaPredicted RBP12.51□□□□□ -0.41
CCDC88A-207ENST00000436346 TCF3P15923 654 aa12.51□□□□□ -0.41
CCDC88A-207ENST00000436346 SMG5Q9UPR3 1016 aaKnown RBP12.51□□□□□ -0.41
CCDC88A-207ENST00000436346 AIM2O14862 343 aa12.51□□□□□ -0.41
CCDC88A-207ENST00000436346 HOXA2O43364 376 aa12.51□□□□□ -0.41
CCDC88A-207ENST00000436346 GAS2O43903 313 aaKnown RBP12.51□□□□□ -0.41
CCDC88A-207ENST00000436346 EPC2Q52LR7 807 aa12.51□□□□□ -0.41
CCDC88A-207ENST00000436346 LVRNQ6Q4G3 990 aa12.51□□□□□ -0.41
CCDC88A-207ENST00000436346 CCDC33Q8N5R6 958 aa12.51□□□□□ -0.41
CCDC88A-207ENST00000436346 MAGEB10Q96LZ2 347 aaPredicted RBP12.51□□□□□ -0.41
CCDC88A-207ENST00000436346 PAK5Q9P286 719 aa12.51□□□□□ -0.41
CCDC88A-207ENST00000436346 PSTPIP1O43586 416 aa12.51□□□□□ -0.41
CCDC88A-207ENST00000436346 SRP72O76094 671 aaKnown RBP12.51□□□□□ -0.41
CCDC88A-207ENST00000436346 CUL2Q13617 745 aa12.51□□□□□ -0.41
CCDC88A-207ENST00000436346 CACHD1Q5VU97 1274 aa12.51□□□□□ -0.41
CCDC88A-207ENST00000436346 CCDC60Q8IWA6 550 aaPredicted RBP12.51□□□□□ -0.41
CCDC88A-207ENST00000436346 FAM151AQ8WW52 585 aa12.51□□□□□ -0.41
CCDC88A-207ENST00000436346 PCDH8O95206 1070 aa12.51□□□□□ -0.41
CCDC88A-207ENST00000436346 ALOX15P16050 662 aaPredicted RBP12.51□□□□□ -0.41
CCDC88A-207ENST00000436346 CCNG1P51959 295 aa12.51□□□□□ -0.41
CCDC88A-207ENST00000436346 PMS1P54277 932 aaKnown RBP12.51□□□□□ -0.41
CCDC88A-207ENST00000436346 RAD23BP54727 409 aa12.51□□□□□ -0.41
CCDC88A-207ENST00000436346 SNRPFP62306 86 aaKnown RBP12.51□□□□□ -0.41
CCDC88A-207ENST00000436346 CTXN3Q4LDR2 81 aa12.51□□□□□ -0.41
CCDC88A-207ENST00000436346 EME1Q96AY2 570 aa12.51□□□□□ -0.41
CCDC88A-207ENST00000436346 CMTM5Q96DZ9 223 aa12.51□□□□□ -0.41
CCDC88A-207ENST00000436346 MPP6Q9NZW5 540 aa12.51□□□□□ -0.41
CCDC88A-207ENST00000436346 GNG14A0A1W2PPG7 69 aa12.51□□□□□ -0.41
CCDC88A-207ENST00000436346 ADCY3O60266 1144 aa12.51□□□□□ -0.41
CCDC88A-207ENST00000436346 CYP51A1Q16850 503 aa12.51□□□□□ -0.41
CCDC88A-207ENST00000436346 PCSK9Q8NBP7 692 aaKnown RBP12.51□□□□□ -0.41
CCDC88A-207ENST00000436346 IGDCC4Q8TDY8 1250 aa12.51□□□□□ -0.41
CCDC88A-207ENST00000436346 CNTNAP5Q8WYK1 1306 aa12.51□□□□□ -0.41
CCDC88A-207ENST00000436346 KIAA1217Q5T5P2 1943 aa12.51□□□□□ -0.41
CCDC88A-207ENST00000436346 PRIM2P49643 509 aa12.51□□□□□ -0.41
CCDC88A-207ENST00000436346 FAM83EQ2M2I3 478 aa12.51□□□□□ -0.41
CCDC88A-207ENST00000436346 STOX1Q6ZVD7 989 aa12.51□□□□□ -0.41
CCDC88A-207ENST00000436346 ITIH5Q86UX2 942 aa12.51□□□□□ -0.41
CCDC88A-207ENST00000436346 IFNEQ86WN2 208 aa12.51□□□□□ -0.41
CCDC88A-207ENST00000436346 ZNF34Q8IZ26 560 aa12.51□□□□□ -0.41
CCDC88A-207ENST00000436346 DDI1Q8WTU0 396 aa12.51□□□□□ -0.41
CCDC88A-207ENST00000436346 ACSF2Q96CM8 615 aaPredicted RBP12.51□□□□□ -0.41
CCDC88A-207ENST00000436346 CCSER1Q9C0I3 900 aa12.51□□□□□ -0.41
CCDC88A-207ENST00000436346 PCDHB2Q9Y5E7 798 aa12.51□□□□□ -0.41
CCDC88A-207ENST00000436346 CASTOR2A6NHX0 329 aa12.51□□□□□ -0.41
CCDC88A-207ENST00000436346 EIF4E1BA6NMX2 242 aaKnown RBP12.51□□□□□ -0.41
CCDC88A-207ENST00000436346 SPRP35270 261 aaPredicted RBP12.51□□□□□ -0.41
CCDC88A-207ENST00000436346 LRRC36Q1X8D7 754 aa12.51□□□□□ -0.41
CCDC88A-207ENST00000436346 UNC45BQ8IWX7 931 aa12.51□□□□□ -0.41
CCDC88A-207ENST00000436346 TADA1Q96BN2 335 aa12.51□□□□□ -0.41
CCDC88A-207ENST00000436346 TARS2Q9BW92 718 aaKnown RBP12.51□□□□□ -0.41
CCDC88A-207ENST00000436346 CHUKO15111 745 aa12.5□□□□□ -0.41
CCDC88A-207ENST00000436346 CAND2O75155 1236 aa12.5□□□□□ -0.41
CCDC88A-207ENST00000436346 STX3Q13277 289 aa12.5□□□□□ -0.41
CCDC88A-207ENST00000436346 LRRC23Q53EV4 343 aaPredicted RBP12.5□□□□□ -0.41
CCDC88A-207ENST00000436346 MRPS31Q92665 395 aaKnown RBP12.5□□□□□ -0.41
CCDC88A-207ENST00000436346 GBA2Q9HCG7 927 aaPredicted RBP12.5□□□□□ -0.41
CCDC88A-207ENST00000436346 SNX8Q9Y5X2 465 aa12.5□□□□□ -0.41
CCDC88A-207ENST00000436346 THP07101 528 aa12.5□□□□□ -0.41
CCDC88A-207ENST00000436346 HPGDP15428 266 aa12.5□□□□□ -0.41
CCDC88A-207ENST00000436346 ALFQ53S48 1182 aa12.5□□□□□ -0.41
CCDC88A-207ENST00000436346 OSBPL10Q9BXB5 764 aa12.5□□□□□ -0.41
CCDC88A-207ENST00000436346 OSBPL1AQ9BXW6 950 aa12.5□□□□□ -0.41
CCDC88A-207ENST00000436346 GTF2A1LQ9UNN4 478 aa12.5□□□□□ -0.41
CCDC88A-207ENST00000436346 MUTP22033 750 aa12.5□□□□□ -0.41
CCDC88A-207ENST00000436346 BTNL9Q6UXG8 535 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms