RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 CXCL8P10145 99 aa12.39□□□□□ -0.43
CD44-209ENST00000433892 EDNRBP24530 442 aa12.39□□□□□ -0.43
CD44-209ENST00000433892 TARSP26639 723 aaKnown RBP12.39□□□□□ -0.43
CD44-209ENST00000433892 YARSP54577 528 aaKnown RBP12.39□□□□□ -0.43
CD44-209ENST00000433892 MXD4Q14582 209 aaPredicted RBP12.39□□□□□ -0.43
CD44-209ENST00000433892 SURF1Q15526 300 aa12.39□□□□□ -0.43
CD44-209ENST00000433892 ATF7IP2Q5U623 682 aa12.39□□□□□ -0.43
CD44-209ENST00000433892 EEF1DP3Q658K8 133 aa12.39□□□□□ -0.43
CD44-209ENST00000433892 MPZL3Q6UWV2 235 aa12.39□□□□□ -0.43
CD44-209ENST00000433892 LBX2Q6XYB7 198 aa12.39□□□□□ -0.43
CD44-209ENST00000433892 RGS9BPQ6ZS82 235 aa12.39□□□□□ -0.43
CD44-209ENST00000433892 BBS12Q6ZW61 710 aa12.39□□□□□ -0.43
CD44-209ENST00000433892 APOBEC3FQ8IUX4 373 aaKnown RBP12.39□□□□□ -0.43
CD44-209ENST00000433892 ATP11CQ8NB49 1132 aa12.39□□□□□ -0.43
CD44-209ENST00000433892 KCTD6Q8NC69 237 aa12.39□□□□□ -0.43
CD44-209ENST00000433892 FBXO36Q8NEA4 188 aa12.39□□□□□ -0.43
CD44-209ENST00000433892 HSPH1Q92598 858 aa12.39□□□□□ -0.43
CD44-209ENST00000433892 INO80BQ9C086 356 aaPredicted RBP12.39□□□□□ -0.43
CD44-209ENST00000433892 C12orf65Q9H3J6 166 aaKnown RBP12.39□□□□□ -0.43
CD44-209ENST00000433892 R3HDMLQ9H3Y0 253 aa12.39□□□□□ -0.43
CD44-209ENST00000433892 GGA3Q9NZ52 723 aa12.39□□□□□ -0.43
CD44-209ENST00000433892 USH1CQ9Y6N9 552 aa12.39□□□□□ -0.43
CD44-209ENST00000433892 WDR91A4D1P6 747 aa12.38□□□□□ -0.43
CD44-209ENST00000433892 GOLGA8RI6L899 631 aa12.38□□□□□ -0.43
CD44-209ENST00000433892 NDC80O14777 642 aa12.38□□□□□ -0.43
CD44-209ENST00000433892 TMEM63AO94886 807 aa12.38□□□□□ -0.43
CD44-209ENST00000433892 ERBB2P04626 1255 aa12.38□□□□□ -0.43
CD44-209ENST00000433892 ELF1P32519 619 aa12.38□□□□□ -0.43
CD44-209ENST00000433892 PHBP35232 272 aa12.38□□□□□ -0.43
CD44-209ENST00000433892 SKIV2L2P42285 1042 aaKnown RBP12.38□□□□□ -0.43
CD44-209ENST00000433892 RAD23BP54727 409 aa12.38□□□□□ -0.43
CD44-209ENST00000433892 BBS9Q3SYG4 887 aa12.38□□□□□ -0.43
CD44-209ENST00000433892 SYCP2LQ5T4T6 812 aa12.38□□□□□ -0.43
CD44-209ENST00000433892 XYLT1Q86Y38 959 aa12.38□□□□□ -0.43
CD44-209ENST00000433892 RFX6Q8HWS3 928 aa12.38□□□□□ -0.43
CD44-209ENST00000433892 TTC13Q8NBP0 860 aa12.38□□□□□ -0.43
CD44-209ENST00000433892 CNKSR2Q8WXI2 1034 aa12.38□□□□□ -0.43
CD44-209ENST00000433892 ZNF75CPQ92670 426 aaPredicted RBP12.38□□□□□ -0.43
CD44-209ENST00000433892 L3MBTL3Q96JM7 780 aaPredicted RBP12.38□□□□□ -0.43
CD44-209ENST00000433892 TMEM237Q96Q45 408 aa12.38□□□□□ -0.43
CD44-209ENST00000433892 TWNKQ96RR1 684 aa12.38□□□□□ -0.43
CD44-209ENST00000433892 PAFAH2Q99487 392 aa12.38□□□□□ -0.43
CD44-209ENST00000433892 KLF6Q99612 283 aaPredicted RBP12.38□□□□□ -0.43
CD44-209ENST00000433892 TACO1Q9BSH4 297 aaKnown RBP12.38□□□□□ -0.43
CD44-209ENST00000433892 CALN1Q9BXU9 219 aa12.38□□□□□ -0.43
CD44-209ENST00000433892 SDCBP2Q9H190 292 aa12.38□□□□□ -0.43
CD44-209ENST00000433892 LHX5Q9H2C1 402 aa12.38□□□□□ -0.43
CD44-209ENST00000433892 EBF2Q9HAK2 575 aa12.38□□□□□ -0.43
CD44-209ENST00000433892 HMGXB4Q9UGU5 601 aa12.38□□□□□ -0.43
CD44-209ENST00000433892 EFR3BQ9Y2G0 817 aa12.38□□□□□ -0.43
CD44-209ENST00000433892 LOC102724159A0A0B4J2E5 919 aa12.37□□□□□ -0.43
CD44-209ENST00000433892 A0A1B0GUA9 196 aa12.37□□□□□ -0.43
CD44-209ENST00000433892 MED7O43513 233 aa12.37□□□□□ -0.43
CD44-209ENST00000433892 B4GALT4O60513 344 aa12.37□□□□□ -0.43
CD44-209ENST00000433892 ZBTB7AO95365 584 aa12.37□□□□□ -0.43
CD44-209ENST00000433892 PROZP22891 400 aa12.37□□□□□ -0.43
CD44-209ENST00000433892 ADRA1DP25100 572 aa12.37□□□□□ -0.43
CD44-209ENST00000433892 MIPP30301 263 aa12.37□□□□□ -0.43
CD44-209ENST00000433892 PWP2Q15269 919 aaKnown RBP12.37□□□□□ -0.43
CD44-209ENST00000433892 RASA2Q15283 850 aa12.37□□□□□ -0.43
CD44-209ENST00000433892 DLK2Q6UY11 383 aa12.37□□□□□ -0.43
CD44-209ENST00000433892 TSHZ1Q6ZSZ6 1077 aa12.37□□□□□ -0.43
CD44-209ENST00000433892 PALM2Q8IXS6 379 aa12.37□□□□□ -0.43
CD44-209ENST00000433892 UTP4Q969X6 686 aaKnown RBP12.37□□□□□ -0.43
CD44-209ENST00000433892 FAM167AQ96KS9 214 aa12.37□□□□□ -0.43
CD44-209ENST00000433892 MAF1Q9H063 256 aa12.37□□□□□ -0.43
CD44-209ENST00000433892 SMYD3Q9H7B4 428 aa12.37□□□□□ -0.43
CD44-209ENST00000433892 PPCSQ9HAB8 311 aa12.37□□□□□ -0.43
CD44-209ENST00000433892 PTPRHQ9HD43 1115 aa12.37□□□□□ -0.43
CD44-209ENST00000433892 TXLNGQ9NUQ3 528 aa12.37□□□□□ -0.43
CD44-209ENST00000433892 XPO7Q9UIA9 1087 aaKnown RBP12.37□□□□□ -0.43
CD44-209ENST00000433892 SIX4Q9UIU6 781 aa12.37□□□□□ -0.43
CD44-209ENST00000433892 HAO1Q9UJM8 370 aa12.37□□□□□ -0.43
CD44-209ENST00000433892 FZD9O00144 591 aa12.37□□□□□ -0.43
CD44-209ENST00000433892 NOP56O00567 594 aaKnown RBP12.37□□□□□ -0.43
CD44-209ENST00000433892 ACKR2O00590 384 aa12.37□□□□□ -0.43
CD44-209ENST00000433892 TGFB3P10600 412 aa12.37□□□□□ -0.43
CD44-209ENST00000433892 GBP2P32456 591 aaPredicted RBP12.37□□□□□ -0.43
CD44-209ENST00000433892 EIF3EP60228 445 aaKnown RBP12.37□□□□□ -0.43
CD44-209ENST00000433892 BASP1P80723 227 aaKnown RBP12.37□□□□□ -0.43
CD44-209ENST00000433892 TAZQ16635 292 aa12.37□□□□□ -0.43
CD44-209ENST00000433892 ZNF667Q5HYK9 610 aa12.37□□□□□ -0.43
CD44-209ENST00000433892 ADGRD1Q6QNK2 874 aa12.37□□□□□ -0.43
CD44-209ENST00000433892 DPH6Q7L8W6 267 aa12.37□□□□□ -0.43
CD44-209ENST00000433892 OTOAQ7RTW8 1153 aa12.37□□□□□ -0.43
CD44-209ENST00000433892 RPAINQ86UA6 219 aa12.37□□□□□ -0.43
CD44-209ENST00000433892 RIOX2Q8IUF8 465 aa12.37□□□□□ -0.43
CD44-209ENST00000433892 FNIP1Q8TF40 1166 aa12.37□□□□□ -0.43
CD44-209ENST00000433892 NSMCE1Q8WV22 266 aa12.37□□□□□ -0.43
CD44-209ENST00000433892 GPR20Q99678 358 aa12.37□□□□□ -0.43
CD44-209ENST00000433892 ACSS3Q9H6R3 686 aa12.37□□□□□ -0.43
CD44-209ENST00000433892 MINDY3Q9H8M7 445 aa12.37□□□□□ -0.43
CD44-209ENST00000433892 ZMYND8Q9ULU4 1186 aaPredicted RBP12.37□□□□□ -0.43
CD44-209ENST00000433892 PIK3R2O00459 728 aa12.36□□□□□ -0.43
CD44-209ENST00000433892 CSDE1O75534 798 aaKnown RBP12.36□□□□□ -0.43
CD44-209ENST00000433892 ZWINTO95229 277 aa12.36□□□□□ -0.43
CD44-209ENST00000433892 PGK2P07205 417 aa12.36□□□□□ -0.43
CD44-209ENST00000433892 NFICP08651 508 aa12.36□□□□□ -0.43
CD44-209ENST00000433892 IQCF3P0C7M6 154 aa12.36□□□□□ -0.43
CD44-209ENST00000433892 RBP3P10745 1247 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms