RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 BHMG1C9JSJ3 638 aaPredicted RBP9.06□□□□□ -0.96
USP40-203ENST00000427112 DNALI1O14645 258 aaPredicted RBP9.06□□□□□ -0.96
USP40-203ENST00000427112 KCNN4O15554 427 aa9.06□□□□□ -0.96
USP40-203ENST00000427112 USP12O75317 370 aa9.06□□□□□ -0.96
USP40-203ENST00000427112 DGKIO75912 1065 aa9.06□□□□□ -0.96
USP40-203ENST00000427112 HAUS5O94927 633 aa9.06□□□□□ -0.96
USP40-203ENST00000427112 ASMTLO95671 621 aa9.06□□□□□ -0.96
USP40-203ENST00000427112 CXCL8P10145 99 aa9.06□□□□□ -0.96
USP40-203ENST00000427112 NEK3P51956 506 aa9.06□□□□□ -0.96
USP40-203ENST00000427112 ZNF268Q14587 947 aaPredicted RBP9.06□□□□□ -0.96
USP40-203ENST00000427112 SLC15A2Q16348 729 aa9.06□□□□□ -0.96
USP40-203ENST00000427112 VWA5B1Q5TIE3 1220 aa9.06□□□□□ -0.96
USP40-203ENST00000427112 RSBN1LQ6PCB5 846 aaPredicted RBP9.06□□□□□ -0.96
USP40-203ENST00000427112 BTNL9Q6UXG8 535 aa9.06□□□□□ -0.96
USP40-203ENST00000427112 KDELC2Q7Z4H8 507 aa9.06□□□□□ -0.96
USP40-203ENST00000427112 FAM151AQ8WW52 585 aa9.06□□□□□ -0.96
USP40-203ENST00000427112 SLC7A3Q8WY07 619 aa9.06□□□□□ -0.96
USP40-203ENST00000427112 STMN2Q93045 179 aa9.06□□□□□ -0.96
USP40-203ENST00000427112 AGAP3Q96P47 875 aa9.06□□□□□ -0.96
USP40-203ENST00000427112 TWNKQ96RR1 684 aa9.06□□□□□ -0.96
USP40-203ENST00000427112 SYT15Q9BQS2 421 aa9.06□□□□□ -0.96
USP40-203ENST00000427112 B3GNT5Q9BYG0 378 aa9.06□□□□□ -0.96
USP40-203ENST00000427112 NMUR2Q9GZQ4 415 aa9.06□□□□□ -0.96
USP40-203ENST00000427112 MANSC1Q9H8J5 431 aa9.06□□□□□ -0.96
USP40-203ENST00000427112 TMPRSS4Q9NRS4 437 aa9.06□□□□□ -0.96
USP40-203ENST00000427112 CYTH4Q9UIA0 394 aa9.06□□□□□ -0.96
USP40-203ENST00000427112 A0A1B0GVG6 124 aa9.06□□□□□ -0.96
USP40-203ENST00000427112 CFAP73A6NFT4 308 aa9.06□□□□□ -0.96
USP40-203ENST00000427112 M0QYV0 167 aa9.06□□□□□ -0.96
USP40-203ENST00000427112 TJP3O95049 919 aa9.06□□□□□ -0.96
USP40-203ENST00000427112 ZBTB7AO95365 584 aa9.06□□□□□ -0.96
USP40-203ENST00000427112 KCNA4P22459 653 aa9.06□□□□□ -0.96
USP40-203ENST00000427112 CCND1P24385 295 aa9.06□□□□□ -0.96
USP40-203ENST00000427112 SESN2P58004 480 aaPredicted RBP9.06□□□□□ -0.96
USP40-203ENST00000427112 CXCL9Q07325 125 aa9.06□□□□□ -0.96
USP40-203ENST00000427112 STAT4Q14765 748 aa9.06□□□□□ -0.96
USP40-203ENST00000427112 ZNF699Q32M78 642 aa9.06□□□□□ -0.96
USP40-203ENST00000427112 PTPN20Q4JDL3 420 aa9.06□□□□□ -0.96
USP40-203ENST00000427112 EEF1DP3Q658K8 133 aa9.06□□□□□ -0.96
USP40-203ENST00000427112 CADM1Q9BY67 442 aaKnown RBP9.06□□□□□ -0.96
USP40-203ENST00000427112 ROPN1BQ9BZX4 212 aaPredicted RBP9.06□□□□□ -0.96
USP40-203ENST00000427112 ROPN1Q9HAT0 212 aaPredicted RBP9.06□□□□□ -0.96
USP40-203ENST00000427112 MAN1C1Q9NR34 630 aa9.06□□□□□ -0.96
USP40-203ENST00000427112 ARHGEF3Q9NR81 526 aa9.06□□□□□ -0.96
USP40-203ENST00000427112 TXLNGQ9NUQ3 528 aa9.06□□□□□ -0.96
USP40-203ENST00000427112 SLC5A4Q9NY91 659 aa9.06□□□□□ -0.96
USP40-203ENST00000427112 MFHAS1Q9Y4C4 1052 aa9.06□□□□□ -0.96
USP40-203ENST00000427112 MAST2Q6P0Q8 1798 aa9.06□□□□□ -0.96
USP40-203ENST00000427112 UBE4BO95155 1302 aa9.05□□□□□ -0.96
USP40-203ENST00000427112 CCNG2Q16589 344 aa9.05□□□□□ -0.96
USP40-203ENST00000427112 DBN1Q16643 649 aa9.05□□□□□ -0.96
USP40-203ENST00000427112 CFAP157Q5JU67 520 aa9.05□□□□□ -0.96
USP40-203ENST00000427112 TMCO4Q5TGY1 634 aa9.05□□□□□ -0.96
USP40-203ENST00000427112 TRMT10BQ6PF06 316 aaKnown RBP9.05□□□□□ -0.96
USP40-203ENST00000427112 CRELD2Q6UXH1 353 aaPredicted RBP9.05□□□□□ -0.96
USP40-203ENST00000427112 PHC3Q8NDX5 983 aa9.05□□□□□ -0.96
USP40-203ENST00000427112 ADAM32Q8TC27 787 aa9.05□□□□□ -0.96
USP40-203ENST00000427112 PYDC1Q8WXC3 89 aa9.05□□□□□ -0.96
USP40-203ENST00000427112 CPT1BQ92523 772 aa9.05□□□□□ -0.96
USP40-203ENST00000427112 SLC7A6OSQ96CW6 309 aaPredicted RBP9.05□□□□□ -0.96
USP40-203ENST00000427112 CPXM1Q96SM3 734 aa9.05□□□□□ -0.96
USP40-203ENST00000427112 APOL2Q9BQE5 337 aa9.05□□□□□ -0.96
USP40-203ENST00000427112 EBF4Q9BQW3 602 aa9.05□□□□□ -0.96
USP40-203ENST00000427112 STRA6Q9BX79 667 aa9.05□□□□□ -0.96
USP40-203ENST00000427112 SUDS3Q9H7L9 328 aaPredicted RBP9.05□□□□□ -0.96
USP40-203ENST00000427112 PARVAQ9NVD7 372 aa9.05□□□□□ -0.96
USP40-203ENST00000427112 UBIAD1Q9Y5Z9 338 aa9.05□□□□□ -0.96
USP40-203ENST00000427112 BTAF1O14981 1849 aa9.05□□□□□ -0.96
USP40-203ENST00000427112 TROVE2P10155 538 aaKnown RBP eCLIP9.05□□□□□ -0.96
USP40-203ENST00000427112 MMP14P50281 582 aa9.05□□□□□ -0.96
USP40-203ENST00000427112 ARL4CP56559 192 aa9.05□□□□□ -0.96
USP40-203ENST00000427112 CHI3L2Q15782 390 aa9.05□□□□□ -0.96
USP40-203ENST00000427112 CYP1B1Q16678 543 aa9.05□□□□□ -0.96
USP40-203ENST00000427112 SLC9A9Q8IVB4 645 aa9.05□□□□□ -0.96
USP40-203ENST00000427112 SNX31Q8N9S9 440 aa9.05□□□□□ -0.96
USP40-203ENST00000427112 WDR83Q9BRX9 315 aaKnown RBP9.05□□□□□ -0.96
USP40-203ENST00000427112 MRPL47Q9HD33 250 aaKnown RBP9.05□□□□□ -0.96
USP40-203ENST00000427112 TBC1D22BQ9NU19 505 aa9.05□□□□□ -0.96
USP40-203ENST00000427112 MKI67P46013 3256 aaKnown RBP9.05□□□□□ -0.96
USP40-203ENST00000427112 MYOCOSA0A1B0GUC4 107 aa9.05□□□□□ -0.96
USP40-203ENST00000427112 EDF1O60869 148 aaKnown RBP9.05□□□□□ -0.96
USP40-203ENST00000427112 ENTPD3O75355 529 aa9.05□□□□□ -0.96
USP40-203ENST00000427112 DPEP1P16444 411 aa9.05□□□□□ -0.96
USP40-203ENST00000427112 TFE3P19532 575 aaPredicted RBP9.05□□□□□ -0.96
USP40-203ENST00000427112 NCF2P19878 526 aaPredicted RBP9.05□□□□□ -0.96
USP40-203ENST00000427112 KLRC2P26717 231 aa9.05□□□□□ -0.96
USP40-203ENST00000427112 BAG6P46379 1132 aa9.05□□□□□ -0.96
USP40-203ENST00000427112 NCKAP1LP55160 1127 aa9.05□□□□□ -0.96
USP40-203ENST00000427112 SLC25A3Q00325 362 aa9.05□□□□□ -0.96
USP40-203ENST00000427112 ZACNQ401N2 412 aa9.05□□□□□ -0.96
USP40-203ENST00000427112 GALNTL6Q49A17 601 aa9.05□□□□□ -0.96
USP40-203ENST00000427112 ACSBG2Q5FVE4 666 aa9.05□□□□□ -0.96
USP40-203ENST00000427112 MFSD5Q6N075 450 aa9.05□□□□□ -0.96
USP40-203ENST00000427112 MPP5Q8N3R9 675 aa9.05□□□□□ -0.96
USP40-203ENST00000427112 EIF1ADQ8N9N8 165 aaKnown RBP9.05□□□□□ -0.96
USP40-203ENST00000427112 ATP6V0A1Q93050 837 aa9.05□□□□□ -0.96
USP40-203ENST00000427112 CXCL16Q9H2A7 254 aa9.05□□□□□ -0.96
USP40-203ENST00000427112 ZNF302Q9NR11 478 aa9.05□□□□□ -0.96
USP40-203ENST00000427112 SMYD2Q9NRG4 433 aa9.05□□□□□ -0.96
USP40-203ENST00000427112 ZNF358Q9NW07 568 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms