RNA–Protein interactions for RNA: ENST00000425280.1

LDB1-202, Transcript of LIM domain binding 1, humanhuman

TSL 5 BASIC

Gene LDB1, Length 2,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-202ENST00000425280 CLCNKBP51801 687 aa27.91■■■□□ 2.06
LDB1-202ENST00000425280 PDE4CQ08493 712 aa27.91■■■□□ 2.06
LDB1-202ENST00000425280 RCOR2Q8IZ40 523 aa27.91■■■□□ 2.06
LDB1-202ENST00000425280 RNF25Q96BH1 459 aaPredicted RBP27.91■■■□□ 2.06
LDB1-202ENST00000425280 HEMGNQ9BXL5 484 aa27.91■■■□□ 2.06
LDB1-202ENST00000425280 RAB17Q9H0T7 212 aa27.91■■■□□ 2.06
LDB1-202ENST00000425280 STARD7Q9NQZ5 370 aa27.91■■■□□ 2.06
LDB1-202ENST00000425280 PODXLO00592 558 aa27.91■■■□□ 2.06
LDB1-202ENST00000425280 KLF1Q13351 362 aaPredicted RBP27.91■■■□□ 2.06
LDB1-202ENST00000425280 TRAF7Q6Q0C0 670 aa27.91■■■□□ 2.06
LDB1-202ENST00000425280 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP27.91■■■□□ 2.06
LDB1-202ENST00000425280 PIWIL1Q96J94 861 aaKnown RBP27.91■■■□□ 2.06
LDB1-202ENST00000425280 ERP44Q9BS26 406 aa27.91■■■□□ 2.06
LDB1-202ENST00000425280 OSBPL8Q9BZF1 889 aa27.91■■■□□ 2.06
LDB1-202ENST00000425280 DNAI2Q9GZS0 605 aa27.91■■■□□ 2.06
LDB1-202ENST00000425280 RSAD1Q9HA92 442 aa27.91■■■□□ 2.06
LDB1-202ENST00000425280 LRCH4O75427 683 aa27.9■■■□□ 2.06
LDB1-202ENST00000425280 KRT1P04264 644 aa27.9■■■□□ 2.06
LDB1-202ENST00000425280 FAM163BP0C2L3 166 aa27.9■■■□□ 2.06
LDB1-202ENST00000425280 ADORA2BP29275 332 aa27.9■■■□□ 2.06
LDB1-202ENST00000425280 FNTAP49354 379 aa27.9■■■□□ 2.06
LDB1-202ENST00000425280 HLTFQ14527 1009 aaKnown RBP eCLIP27.9■■■□□ 2.06
LDB1-202ENST00000425280 WSCD1Q658N2 575 aa27.9■■■□□ 2.06
LDB1-202ENST00000425280 DUPD1Q68J44 220 aa27.9■■■□□ 2.06
LDB1-202ENST00000425280 TMEM110Q86TL2 294 aa27.9■■■□□ 2.06
LDB1-202ENST00000425280 ANKRD52Q8NB46 1076 aa27.9■■■□□ 2.06
LDB1-202ENST00000425280 STK32AQ8WU08 396 aa27.9■■■□□ 2.06
LDB1-202ENST00000425280 C1orf54Q8WWF1 131 aa27.9■■■□□ 2.06
LDB1-202ENST00000425280 RBM41Q96IZ5 413 aaKnown RBP27.9■■■□□ 2.06
LDB1-202ENST00000425280 TNIP3Q96KP6 325 aa27.9■■■□□ 2.06
LDB1-202ENST00000425280 RUNDC3BQ96NL0 473 aa27.9■■■□□ 2.06
LDB1-202ENST00000425280 SLITRK1Q96PX8 696 aa27.9■■■□□ 2.06
LDB1-202ENST00000425280 DPH5Q9H2P9 285 aa27.9■■■□□ 2.06
LDB1-202ENST00000425280 SAGE1Q9NXZ1 904 aa27.9■■■□□ 2.06
LDB1-202ENST00000425280 PI4K2BG5E9Z4 385 aa27.9■■■□□ 2.06
LDB1-202ENST00000425280 GABBR2O75899 941 aa27.9■■■□□ 2.06
LDB1-202ENST00000425280 IBSPP21815 317 aaPredicted RBP27.9■■■□□ 2.06
LDB1-202ENST00000425280 SLC25A11Q02978 314 aaKnown RBP27.9■■■□□ 2.06
LDB1-202ENST00000425280 SENP8Q96LD8 212 aa27.9■■■□□ 2.06
LDB1-202ENST00000425280 FAM114A2Q9NRY5 505 aa27.9■■■□□ 2.06
LDB1-202ENST00000425280 RASAL2Q9UJF2 1139 aa27.9■■■□□ 2.06
LDB1-202ENST00000425280 GTF3C5Q9Y5Q8 519 aaPredicted RBP27.9■■■□□ 2.06
LDB1-202ENST00000425280 BST2Q10589 180 aaKnown RBP27.89■■■□□ 2.06
LDB1-202ENST00000425280 POLNQ7Z5Q5 900 aa27.89■■■□□ 2.06
LDB1-202ENST00000425280 C3orf58Q8NDZ4 430 aa27.89■■■□□ 2.06
LDB1-202ENST00000425280 ZBTB9Q96C00 473 aa27.89■■■□□ 2.06
LDB1-202ENST00000425280 TRIM31Q9BZY9 425 aa27.89■■■□□ 2.06
LDB1-202ENST00000425280 NEUROG2Q9H2A3 272 aa27.89■■■□□ 2.06
LDB1-202ENST00000425280 DDX56Q9NY93 547 aaKnown RBP27.89■■■□□ 2.06
LDB1-202ENST00000425280 CASTOR2A6NHX0 329 aa27.88■■■□□ 2.05
LDB1-202ENST00000425280 GABRDO14764 452 aa27.88■■■□□ 2.05
LDB1-202ENST00000425280 RPL9P32969 192 aaKnown RBP27.88■■■□□ 2.05
LDB1-202ENST00000425280 KCNJ1P48048 391 aa27.88■■■□□ 2.05
LDB1-202ENST00000425280 BCAT1P54687 386 aa27.88■■■□□ 2.05
LDB1-202ENST00000425280 ZFYVE27Q5T4F4 411 aa27.88■■■□□ 2.05
LDB1-202ENST00000425280 TRNP1Q6NT89 227 aa27.88■■■□□ 2.05
LDB1-202ENST00000425280 OLFML1Q6UWY5 402 aa27.88■■■□□ 2.05
LDB1-202ENST00000425280 CCDC105Q8IYK2 499 aa27.88■■■□□ 2.05
LDB1-202ENST00000425280 B3GALNT2Q8NCR0 500 aa27.88■■■□□ 2.05
LDB1-202ENST00000425280 SLC2A14Q8TDB8 520 aa27.88■■■□□ 2.05
LDB1-202ENST00000425280 PGBD4Q96DM1 585 aa27.88■■■□□ 2.05
LDB1-202ENST00000425280 ACBD3Q9H3P7 528 aa27.88■■■□□ 2.05
LDB1-202ENST00000425280 CHST7Q9NS84 486 aa27.88■■■□□ 2.05
LDB1-202ENST00000425280 PHF24Q9UPV7 400 aa27.88■■■□□ 2.05
LDB1-202ENST00000425280 R3HDM2Q9Y2K5 976 aaKnown RBP27.88■■■□□ 2.05
LDB1-202ENST00000425280 MBTPS1Q14703 1052 aa27.88■■■□□ 2.05
LDB1-202ENST00000425280 MFSD7Q6UXD7 560 aa27.88■■■□□ 2.05
LDB1-202ENST00000425280 TSEN2Q8NCE0 465 aaKnown RBP27.88■■■□□ 2.05
LDB1-202ENST00000425280 ATG4AQ8WYN0 398 aa27.88■■■□□ 2.05
LDB1-202ENST00000425280 RAPGEF5Q92565 580 aa27.88■■■□□ 2.05
LDB1-202ENST00000425280 ACSF2Q96CM8 615 aaPredicted RBP27.88■■■□□ 2.05
LDB1-202ENST00000425280 PAAF1Q9BRP4 392 aa27.88■■■□□ 2.05
LDB1-202ENST00000425280 DCLK3Q9C098 648 aa27.88■■■□□ 2.05
LDB1-202ENST00000425280 TRIM17Q9Y577 477 aa27.88■■■□□ 2.05
LDB1-202ENST00000425280 C2CD4BA6NLJ0 364 aa27.87■■■□□ 2.05
LDB1-202ENST00000425280 ATP2C2O75185 946 aa27.87■■■□□ 2.05
LDB1-202ENST00000425280 SKIP12755 728 aa27.87■■■□□ 2.05
LDB1-202ENST00000425280 IL1R2P27930 398 aa27.87■■■□□ 2.05
LDB1-202ENST00000425280 CETN2P41208 172 aa27.87■■■□□ 2.05
LDB1-202ENST00000425280 ZNF143P52747 638 aaPredicted RBP27.87■■■□□ 2.05
LDB1-202ENST00000425280 ACAP1Q15027 740 aa27.87■■■□□ 2.05
LDB1-202ENST00000425280 ECHDC2Q86YB7 292 aa27.87■■■□□ 2.05
LDB1-202ENST00000425280 XRN2Q9H0D6 950 aaKnown RBP eCLIP27.87■■■□□ 2.05
LDB1-202ENST00000425280 H3BQF6 201 aa27.87■■■□□ 2.05
LDB1-202ENST00000425280 ARVCFO00192 962 aa27.87■■■□□ 2.05
LDB1-202ENST00000425280 POMCP01189 267 aa27.87■■■□□ 2.05
LDB1-202ENST00000425280 GPD1P21695 349 aa27.87■■■□□ 2.05
LDB1-202ENST00000425280 TKTP29401 623 aaKnown RBP27.87■■■□□ 2.05
LDB1-202ENST00000425280 SNX1Q13596 522 aa27.87■■■□□ 2.05
LDB1-202ENST00000425280 UPP1Q16831 310 aa27.87■■■□□ 2.05
LDB1-202ENST00000425280 SPOCD1Q6ZMY3 1216 aa27.87■■■□□ 2.05
LDB1-202ENST00000425280 SH3TC2Q8TF17 1288 aa27.87■■■□□ 2.05
LDB1-202ENST00000425280 RXFP2Q8WXD0 754 aa27.87■■■□□ 2.05
LDB1-202ENST00000425280 BRCA2P51587 3418 aa27.86■■■□□ 2.05
LDB1-202ENST00000425280 PAPSS1O43252 624 aaPredicted RBP27.86■■■□□ 2.05
LDB1-202ENST00000425280 GRAP2O75791 330 aa27.86■■■□□ 2.05
LDB1-202ENST00000425280 ACAT1P24752 427 aaKnown RBP27.86■■■□□ 2.05
LDB1-202ENST00000425280 SNX16P57768 344 aa27.86■■■□□ 2.05
LDB1-202ENST00000425280 COPS2P61201 443 aa27.86■■■□□ 2.05
LDB1-202ENST00000425280 SLC6A3Q01959 620 aa27.86■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms