RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 WHAMMQ8TF30 809 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 HASPINQ8TF76 798 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 TFAP2BQ92481 460 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 GOLGA1Q92805 767 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 CYFIP2Q96F07 1278 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 SMARCD1Q96GM5 515 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 RPGRIP1Q96KN7 1286 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 SUSD3Q96L08 255 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 MCEEQ96PE7 176 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 TMEM175Q9BSA9 504 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 MED10Q9BTT4 135 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 SELENOOQ9BVL4 669 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 MCOLN1Q9GZU1 580 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 OSGEPQ9NPF4 335 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 CYLDQ9NQC7 956 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 ST7Q9NRC1 585 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 PARVAQ9NVD7 372 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 CACNG4Q9UBN1 327 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 SALL4Q9UJQ4 1053 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 CDH9Q9ULB4 789 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 STXBP5LQ9Y2K9 1186 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 PRG3Q9Y2Y8 225 aaPredicted RBP6.3□□□□□ -1.4
HMGB3-202ENST00000419110 DUSP10Q9Y6W6 482 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 CEP350Q5VT06 3117 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 ATG2AQ2TAZ0 1938 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 DENND4CQ5VZ89 1909 aa6.29□□□□□ -1.4
HMGB3-202ENST00000419110 BRCA2P51587 3418 aa6.29□□□□□ -1.4
HMGB3-202ENST00000419110 GOLGA6L10A0A0M3HER8 536 aa6.29□□□□□ -1.4
HMGB3-202ENST00000419110 ABHD14A-ACY1A0A1B0GW23 586 aa6.29□□□□□ -1.4
HMGB3-202ENST00000419110 CCDC66A2RUB6 948 aa6.29□□□□□ -1.4
HMGB3-202ENST00000419110 CTAGE15A4D2H0 777 aa6.29□□□□□ -1.4
HMGB3-202ENST00000419110 TBKBP1A7MCY6 615 aa6.29□□□□□ -1.4
HMGB3-202ENST00000419110 GOLGA8SH3BPF8 625 aa6.29□□□□□ -1.4
HMGB3-202ENST00000419110 M0QZQ0 153 aa6.29□□□□□ -1.4
HMGB3-202ENST00000419110 MYO1FO00160 1098 aa6.29□□□□□ -1.4
HMGB3-202ENST00000419110 PGRMC1O00264 195 aaKnown RBP6.29□□□□□ -1.4
HMGB3-202ENST00000419110 CES2O00748 559 aa6.29□□□□□ -1.4
HMGB3-202ENST00000419110 KCNK3O14649 394 aa6.29□□□□□ -1.4
HMGB3-202ENST00000419110 SYN3O14994 580 aa6.29□□□□□ -1.4
HMGB3-202ENST00000419110 FANCGO15287 622 aa6.29□□□□□ -1.4
HMGB3-202ENST00000419110 SART1O43290 800 aaKnown RBP6.29□□□□□ -1.4
HMGB3-202ENST00000419110 PSTPIP1O43586 416 aa6.29□□□□□ -1.4
HMGB3-202ENST00000419110 NCK2O43639 380 aa6.29□□□□□ -1.4
HMGB3-202ENST00000419110 ABL1P00519 1130 aa6.29□□□□□ -1.4
HMGB3-202ENST00000419110 TIMP1P01033 207 aa6.29□□□□□ -1.4
HMGB3-202ENST00000419110 CYP11A1P05108 521 aa6.29□□□□□ -1.4
HMGB3-202ENST00000419110 CTAGE8P0CG41 777 aa6.29□□□□□ -1.4
HMGB3-202ENST00000419110 NPR3P17342 541 aa6.29□□□□□ -1.4
HMGB3-202ENST00000419110 ACAT1P24752 427 aaKnown RBP6.29□□□□□ -1.4
HMGB3-202ENST00000419110 PAFAH1B1P43034 410 aa6.29□□□□□ -1.4
HMGB3-202ENST00000419110 ACADSBP45954 432 aa6.29□□□□□ -1.4
HMGB3-202ENST00000419110 FAM189BP81408 668 aa6.29□□□□□ -1.4
HMGB3-202ENST00000419110 YWHAHQ04917 246 aaPredicted RBP6.29□□□□□ -1.4
HMGB3-202ENST00000419110 MESDQ14696 234 aa6.29□□□□□ -1.4
HMGB3-202ENST00000419110 INTS6LQ5JSJ4 861 aaKnown RBP6.29□□□□□ -1.4
HMGB3-202ENST00000419110 CYP4A22Q5TCH4 519 aa6.29□□□□□ -1.4
HMGB3-202ENST00000419110 MEI1Q5TIA1 1274 aa6.29□□□□□ -1.4
HMGB3-202ENST00000419110 PAPD7Q5XG87 772 aaKnown RBP6.29□□□□□ -1.4
HMGB3-202ENST00000419110 SCARA3Q6AZY7 606 aa6.29□□□□□ -1.4
HMGB3-202ENST00000419110 OVOS1Q6IE37 1185 aa6.29□□□□□ -1.4
HMGB3-202ENST00000419110 PLEKHA7Q6IQ23 1121 aa6.29□□□□□ -1.4
HMGB3-202ENST00000419110 PSRC1Q6PGN9 363 aaPredicted RBP6.29□□□□□ -1.4
HMGB3-202ENST00000419110 DCLRE1AQ6PJP8 1040 aa6.29□□□□□ -1.4
HMGB3-202ENST00000419110 C4orf50Q6ZRC1 276 aa6.29□□□□□ -1.4
HMGB3-202ENST00000419110 CTAGE6Q86UF2 777 aa6.29□□□□□ -1.4
HMGB3-202ENST00000419110 FAM35AQ86V20 835 aa6.29□□□□□ -1.4
HMGB3-202ENST00000419110 DNAAF5Q86Y56 855 aa6.29□□□□□ -1.4
HMGB3-202ENST00000419110 ZDHHC17Q8IUH5 632 aa6.29□□□□□ -1.4
HMGB3-202ENST00000419110 CTAGE4Q8IX94 777 aa6.29□□□□□ -1.4
HMGB3-202ENST00000419110 COLGALT2Q8IYK4 626 aa6.29□□□□□ -1.4
HMGB3-202ENST00000419110 SIX6OS1Q8N1H7 587 aa6.29□□□□□ -1.4
HMGB3-202ENST00000419110 THEM5Q8N1Q8 247 aa6.29□□□□□ -1.4
HMGB3-202ENST00000419110 SLC2A14Q8TDB8 520 aa6.29□□□□□ -1.4
HMGB3-202ENST00000419110 MYLPFQ96A32 169 aa6.29□□□□□ -1.4
HMGB3-202ENST00000419110 C18orf8Q96DM3 657 aa6.29□□□□□ -1.4
HMGB3-202ENST00000419110 CAPZA3Q96KX2 299 aa6.29□□□□□ -1.4
HMGB3-202ENST00000419110 OSBPL9Q96SU4 736 aa6.29□□□□□ -1.4
HMGB3-202ENST00000419110 NAP1L3Q99457 506 aaPredicted RBP6.29□□□□□ -1.4
HMGB3-202ENST00000419110 ZSWIM1Q9BR11 485 aa6.29□□□□□ -1.4
HMGB3-202ENST00000419110 COLEC11Q9BWP8 271 aa6.29□□□□□ -1.4
HMGB3-202ENST00000419110 PRKD2Q9BZL6 878 aa6.29□□□□□ -1.4
HMGB3-202ENST00000419110 CARD9Q9H257 536 aa6.29□□□□□ -1.4
HMGB3-202ENST00000419110 MTIF3Q9H2K0 278 aaKnown RBP6.29□□□□□ -1.4
HMGB3-202ENST00000419110 DPEP3Q9H4B8 488 aa6.29□□□□□ -1.4
HMGB3-202ENST00000419110 METTL5Q9NRN9 209 aaKnown RBP6.29□□□□□ -1.4
HMGB3-202ENST00000419110 RNF14Q9UBS8 474 aa6.29□□□□□ -1.4
HMGB3-202ENST00000419110 IP6K2Q9UHH9 426 aa6.29□□□□□ -1.4
HMGB3-202ENST00000419110 ADAM28Q9UKQ2 775 aa6.29□□□□□ -1.4
HMGB3-202ENST00000419110 SBDSQ9Y3A5 250 aaKnown RBP eCLIP6.29□□□□□ -1.4
HMGB3-202ENST00000419110 MTCL1Q9Y4B5 1905 aaKnown RBP6.29□□□□□ -1.4
HMGB3-202ENST00000419110 LOC101059915A0A1B0GWI6 518 aaPredicted RBP6.28□□□□□ -1.4
HMGB3-202ENST00000419110 E5RJQ4 531 aa6.28□□□□□ -1.4
HMGB3-202ENST00000419110 I3L4J1 428 aa6.28□□□□□ -1.4
HMGB3-202ENST00000419110 ENPP3O14638 875 aa6.28□□□□□ -1.4
HMGB3-202ENST00000419110 GABRDO14764 452 aa6.28□□□□□ -1.4
HMGB3-202ENST00000419110 XPO1O14980 1071 aaKnown RBP6.28□□□□□ -1.4
HMGB3-202ENST00000419110 GFRA3O60609 400 aa6.28□□□□□ -1.4
HMGB3-202ENST00000419110 TADA2AO75478 443 aa6.28□□□□□ -1.4
HMGB3-202ENST00000419110 TADA3O75528 432 aa6.28□□□□□ -1.4
HMGB3-202ENST00000419110 PROSCO94903 275 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms