RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 ZNF211Q13398 564 aaPredicted RBP8.81□□□□□ -1
USP54-203ENST00000418501 LEKR1Q6ZMV7 388 aa8.81□□□□□ -1
USP54-203ENST00000418501 CDKL3Q8IVW4 592 aaPredicted RBP8.81□□□□□ -1
USP54-203ENST00000418501 SNF8Q96H20 258 aa8.81□□□□□ -1
USP54-203ENST00000418501 GAD1Q99259 594 aa8.81□□□□□ -1
USP54-203ENST00000418501 UBXN6Q9BZV1 441 aa8.81□□□□□ -1
USP54-203ENST00000418501 DDX47Q9H0S4 455 aaKnown RBP8.81□□□□□ -1
USP54-203ENST00000418501 ELAC1Q9H777 363 aaKnown RBP8.81□□□□□ -1
USP54-203ENST00000418501 GDF3Q9NR23 364 aa8.81□□□□□ -1
USP54-203ENST00000418501 GOLGA6CA6NDK9 693 aa8.81□□□□□ -1
USP54-203ENST00000418501 TTLL13PA6NNM8 815 aa8.81□□□□□ -1
USP54-203ENST00000418501 TADA2AO75478 443 aa8.81□□□□□ -1
USP54-203ENST00000418501 GOLGA6DP0CG33 693 aa8.81□□□□□ -1
USP54-203ENST00000418501 PTPN1P18031 435 aaKnown RBP8.81□□□□□ -1
USP54-203ENST00000418501 PTPN7P35236 360 aa8.81□□□□□ -1
USP54-203ENST00000418501 ZNF200P98182 395 aaPredicted RBP8.81□□□□□ -1
USP54-203ENST00000418501 ZBTB6Q15916 424 aa8.81□□□□□ -1
USP54-203ENST00000418501 TADA2BQ86TJ2 420 aa8.81□□□□□ -1
USP54-203ENST00000418501 VSIG1Q86XK7 387 aa8.81□□□□□ -1
USP54-203ENST00000418501 PSTKQ8IV42 348 aaKnown RBP8.81□□□□□ -1
USP54-203ENST00000418501 UBLCP1Q8WVY7 318 aaPredicted RBP8.81□□□□□ -1
USP54-203ENST00000418501 P3H4Q92791 437 aa8.81□□□□□ -1
USP54-203ENST00000418501 RNF34Q969K3 372 aa8.81□□□□□ -1
USP54-203ENST00000418501 HNRNPABQ99729 332 aaKnown RBP8.81□□□□□ -1
USP54-203ENST00000418501 PPCSQ9HAB8 311 aa8.81□□□□□ -1
USP54-203ENST00000418501 DDX43Q9NXZ2 648 aaKnown RBP8.81□□□□□ -1
USP54-203ENST00000418501 GOLGA6AQ9NYA3 693 aa8.81□□□□□ -1
USP54-203ENST00000418501 PLXNA1Q9UIW2 1896 aa8.81□□□□□ -1
USP54-203ENST00000418501 ZNFX1Q9P2E3 1918 aaKnown RBP8.81□□□□□ -1
USP54-203ENST00000418501 KAT6AQ92794 2004 aa8.81□□□□□ -1
USP54-203ENST00000418501 B3GAT3O94766 335 aa8.81□□□□□ -1
USP54-203ENST00000418501 EDN1P05305 212 aa8.81□□□□□ -1
USP54-203ENST00000418501 PDGFRBP09619 1106 aa8.81□□□□□ -1
USP54-203ENST00000418501 IQCF3P0C7M6 154 aa8.81□□□□□ -1
USP54-203ENST00000418501 MLH1P40692 756 aa8.81□□□□□ -1
USP54-203ENST00000418501 PTPROQ16827 1216 aa8.81□□□□□ -1
USP54-203ENST00000418501 ACBD5Q5T8D3 534 aaPredicted RBP8.81□□□□□ -1
USP54-203ENST00000418501 LRRC8DQ7L1W4 858 aa8.81□□□□□ -1
USP54-203ENST00000418501 ARCQ7LC44 396 aa8.81□□□□□ -1
USP54-203ENST00000418501 JAMLQ86YT9 394 aa8.81□□□□□ -1
USP54-203ENST00000418501 C12orf50Q8NA57 414 aaPredicted RBP8.81□□□□□ -1
USP54-203ENST00000418501 B3GALNT2Q8NCR0 500 aa8.81□□□□□ -1
USP54-203ENST00000418501 TRPV1Q8NER1 839 aa8.81□□□□□ -1
USP54-203ENST00000418501 FAM76AQ8TAV0 307 aa8.81□□□□□ -1
USP54-203ENST00000418501 UBA3Q8TBC4 463 aa8.81□□□□□ -1
USP54-203ENST00000418501 ZBTB10Q96DT7 871 aa8.81□□□□□ -1
USP54-203ENST00000418501 TTC25Q96NG3 672 aa8.81□□□□□ -1
USP54-203ENST00000418501 LRRC19Q9H756 370 aa8.81□□□□□ -1
USP54-203ENST00000418501 NGRNQ9NPE2 291 aaKnown RBP8.81□□□□□ -1
USP54-203ENST00000418501 WHRNQ9P202 907 aa8.81□□□□□ -1
USP54-203ENST00000418501 TUBGCP4Q9UGJ1 667 aa8.81□□□□□ -1
USP54-203ENST00000418501 ANAPC5Q9UJX4 755 aa8.81□□□□□ -1
USP54-203ENST00000418501 RAD51CO43502 376 aa8.8□□□□□ -1
USP54-203ENST00000418501 PHBP35232 272 aa8.8□□□□□ -1
USP54-203ENST00000418501 RFC2P35250 354 aa8.8□□□□□ -1
USP54-203ENST00000418501 NOMO2Q5JPE7 1267 aa8.8□□□□□ -1
USP54-203ENST00000418501 EFHC2Q5JST6 749 aa8.8□□□□□ -1
USP54-203ENST00000418501 ALKAL1Q6UXT8 129 aa8.8□□□□□ -1
USP54-203ENST00000418501 TMEM192Q8IY95 271 aa8.8□□□□□ -1
USP54-203ENST00000418501 TEKT4Q8WW24 435 aa8.8□□□□□ -1
USP54-203ENST00000418501 MCRS1Q96EZ8 462 aa8.8□□□□□ -1
USP54-203ENST00000418501 ARHGAP39Q9C0H5 1083 aa8.8□□□□□ -1
USP54-203ENST00000418501 FAM204AQ9H8W3 233 aa8.8□□□□□ -1
USP54-203ENST00000418501 ZWILCHQ9H900 591 aa8.8□□□□□ -1
USP54-203ENST00000418501 FAM49BQ9NUQ9 324 aa8.8□□□□□ -1
USP54-203ENST00000418501 COG5Q9UP83 839 aa8.8□□□□□ -1
USP54-203ENST00000418501 TFRCP02786 760 aaKnown RBP8.8□□□□□ -1
USP54-203ENST00000418501 STIP1P31948 543 aaKnown RBP8.8□□□□□ -1
USP54-203ENST00000418501 LILRA4P59901 499 aa8.8□□□□□ -1
USP54-203ENST00000418501 BEND6Q5SZJ8 279 aaPredicted RBP8.8□□□□□ -1
USP54-203ENST00000418501 MAP3K21Q5TCX8 1036 aa8.8□□□□□ -1
USP54-203ENST00000418501 IRGQQ8WZA9 623 aa8.8□□□□□ -1
USP54-203ENST00000418501 CALN1Q9BXU9 219 aa8.8□□□□□ -1
USP54-203ENST00000418501 DUSP16Q9BY84 665 aa8.8□□□□□ -1
USP54-203ENST00000418501 CWC15Q9P013 229 aaKnown RBP8.8□□□□□ -1
USP54-203ENST00000418501 DRG1Q9Y295 367 aaKnown RBP8.8□□□□□ -1
USP54-203ENST00000418501 DPYSL4O14531 572 aa8.8□□□□□ -1
USP54-203ENST00000418501 NPR3P17342 541 aa8.8□□□□□ -1
USP54-203ENST00000418501 COG7P83436 770 aa8.8□□□□□ -1
USP54-203ENST00000418501 TAF12Q16514 161 aa8.8□□□□□ -1
USP54-203ENST00000418501 SPOCD1Q6ZMY3 1216 aa8.8□□□□□ -1
USP54-203ENST00000418501 PALB2Q86YC2 1186 aa8.8□□□□□ -1
USP54-203ENST00000418501 RNF139Q8WU17 664 aa8.8□□□□□ -1
USP54-203ENST00000418501 ACBD6Q9BR61 282 aa8.8□□□□□ -1
USP54-203ENST00000418501 TMEM106CQ9BVX2 250 aa8.8□□□□□ -1
USP54-203ENST00000418501 DPH5Q9H2P9 285 aa8.8□□□□□ -1
USP54-203ENST00000418501 TMEM161AQ9NX61 479 aa8.8□□□□□ -1
USP54-203ENST00000418501 HES2Q9Y543 173 aa8.8□□□□□ -1
USP54-203ENST00000418501 PDE2AO00408 941 aaPredicted RBP8.8□□□□□ -1
USP54-203ENST00000418501 APOL1O14791 398 aa8.8□□□□□ -1
USP54-203ENST00000418501 PKN2Q16513 984 aaKnown RBP8.8□□□□□ -1
USP54-203ENST00000418501 UBXN11Q5T124 520 aa8.8□□□□□ -1
USP54-203ENST00000418501 CYP4A22Q5TCH4 519 aa8.8□□□□□ -1
USP54-203ENST00000418501 KAZNQ674X7 775 aa8.8□□□□□ -1
USP54-203ENST00000418501 OVOS1Q6IE37 1185 aa8.8□□□□□ -1
USP54-203ENST00000418501 ZNF280DQ6N043 979 aa8.8□□□□□ -1
USP54-203ENST00000418501 PHLDB2Q86SQ0 1253 aa8.8□□□□□ -1
USP54-203ENST00000418501 XYLT1Q86Y38 959 aa8.8□□□□□ -1
USP54-203ENST00000418501 ECHDC2Q86YB7 292 aa8.8□□□□□ -1
USP54-203ENST00000418501 RNF25Q96BH1 459 aaPredicted RBP8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 77.1 ms