RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 HERC6Q8IVU3 1022 aa12.47□□□□□ -0.41
PTPRF-205ENST00000414879 CCDC124Q96CT7 223 aaKnown RBP12.47□□□□□ -0.41
PTPRF-205ENST00000414879 SYT15Q9BQS2 421 aa12.47□□□□□ -0.41
PTPRF-205ENST00000414879 MUC3BQ9H195 1237 aa12.47□□□□□ -0.41
PTPRF-205ENST00000414879 CHST12Q9NRB3 414 aa12.47□□□□□ -0.41
PTPRF-205ENST00000414879 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.47□□□□□ -0.416e-6■□□□□ 10.5
PTPRF-205ENST00000414879 C2CD2Q9Y426 696 aa12.47□□□□□ -0.41
PTPRF-205ENST00000414879 AMHP03971 560 aa12.47□□□□□ -0.41
PTPRF-205ENST00000414879 VSNL1P62760 191 aa12.47□□□□□ -0.41
PTPRF-205ENST00000414879 MEA1Q16626 185 aa12.47□□□□□ -0.41
PTPRF-205ENST00000414879 SDE2Q6IQ49 451 aa12.47□□□□□ -0.41
PTPRF-205ENST00000414879 LBX2Q6XYB7 198 aa12.47□□□□□ -0.41
PTPRF-205ENST00000414879 SMARCD1Q96GM5 515 aa12.47□□□□□ -0.41
PTPRF-205ENST00000414879 TRABDQ9H4I3 376 aa12.47□□□□□ -0.41
PTPRF-205ENST00000414879 RBM12Q9NTZ6 932 aaKnown RBP12.47□□□□□ -0.41
PTPRF-205ENST00000414879 ABI2Q9NYB9 513 aaPredicted RBP12.47□□□□□ -0.41
PTPRF-205ENST00000414879 THEGQ9P2T0 379 aa12.47□□□□□ -0.41
PTPRF-205ENST00000414879 FNDC3AQ9Y2H6 1198 aaKnown RBP12.47□□□□□ -0.41
PTPRF-205ENST00000414879 TXNDC9O14530 226 aa12.47□□□□□ -0.41
PTPRF-205ENST00000414879 ZNF286BP0CG31 522 aa12.47□□□□□ -0.41
PTPRF-205ENST00000414879 CXCL8P10145 99 aa12.47□□□□□ -0.41
PTPRF-205ENST00000414879 NCF2P19878 526 aaPredicted RBP12.47□□□□□ -0.41
PTPRF-205ENST00000414879 ACO1P21399 889 aaKnown RBP12.47□□□□□ -0.41
PTPRF-205ENST00000414879 EPHB2P29323 1055 aa12.47□□□□□ -0.41
PTPRF-205ENST00000414879 ICAM3P32942 547 aa12.47□□□□□ -0.41
PTPRF-205ENST00000414879 SP3Q02447 781 aa12.47□□□□□ -0.41
PTPRF-205ENST00000414879 NAA25Q14CX7 972 aa12.47□□□□□ -0.41
PTPRF-205ENST00000414879 GPR142Q7Z601 462 aa12.47□□□□□ -0.41
PTPRF-205ENST00000414879 ESYT3A0FGR9 886 aa12.46□□□□□ -0.41
PTPRF-205ENST00000414879 CNTFP26441 200 aa12.46□□□□□ -0.41
PTPRF-205ENST00000414879 MAGEA4P43358 317 aa12.46□□□□□ -0.41
PTPRF-205ENST00000414879 TUFMP49411 452 aaKnown RBP12.46□□□□□ -0.41
PTPRF-205ENST00000414879 ARHGEF7Q14155 803 aa12.46□□□□□ -0.41
PTPRF-205ENST00000414879 TTC19Q6DKK2 380 aaPredicted RBP12.46□□□□□ -0.41
PTPRF-205ENST00000414879 OVOS1Q6IE37 1185 aa12.46□□□□□ -0.41
PTPRF-205ENST00000414879 UGT3A1Q6NUS8 523 aa12.46□□□□□ -0.41
PTPRF-205ENST00000414879 TAS2R42Q7RTR8 314 aa12.46□□□□□ -0.41
PTPRF-205ENST00000414879 DNAJB3Q8WWF6 145 aa12.46□□□□□ -0.41
PTPRF-205ENST00000414879 SERPINB12Q96P63 405 aa12.46□□□□□ -0.41
PTPRF-205ENST00000414879 TLR8Q9NR97 1041 aaKnown RBP12.46□□□□□ -0.41
PTPRF-205ENST00000414879 DRG1Q9Y295 367 aaKnown RBP12.46□□□□□ -0.41
PTPRF-205ENST00000414879 IGKV6D-41A0A0C4DH26 115 aa12.46□□□□□ -0.41
PTPRF-205ENST00000414879 HIST1H2AGP0C0S8 130 aaPredicted RBP12.46□□□□□ -0.41
PTPRF-205ENST00000414879 HIST1H2ADP20671 130 aa12.46□□□□□ -0.41
PTPRF-205ENST00000414879 ARFIP2P53365 341 aa12.46□□□□□ -0.41
PTPRF-205ENST00000414879 TBX2Q13207 712 aaPredicted RBP12.46□□□□□ -0.41
PTPRF-205ENST00000414879 HSP90AA5PQ58FG0 334 aa12.46□□□□□ -0.41
PTPRF-205ENST00000414879 PTPRN2Q92932 1015 aa12.46□□□□□ -0.41
PTPRF-205ENST00000414879 HIST1H2AHQ96KK5 128 aa12.46□□□□□ -0.41
PTPRF-205ENST00000414879 HIST1H2AJQ99878 128 aa12.46□□□□□ -0.41
PTPRF-205ENST00000414879 H2AFJQ9BTM1 129 aa12.46□□□□□ -0.41
PTPRF-205ENST00000414879 KCND1Q9NSA2 647 aa12.46□□□□□ -0.41
PTPRF-205ENST00000414879 ARHGEF38Q9NXL2 777 aa12.46□□□□□ -0.41
PTPRF-205ENST00000414879 KLK14Q9P0G3 267 aa12.46□□□□□ -0.41
PTPRF-205ENST00000414879 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.46□□□□□ -0.41
PTPRF-205ENST00000414879 ZBTB22O15209 634 aa12.46□□□□□ -0.41
PTPRF-205ENST00000414879 NDUFS3O75489 264 aa12.46□□□□□ -0.41
PTPRF-205ENST00000414879 KRT16P08779 473 aa12.46□□□□□ -0.41
PTPRF-205ENST00000414879 PHEXP78562 749 aa12.46□□□□□ -0.41
PTPRF-205ENST00000414879 MORF4L2Q15014 288 aa12.46□□□□□ -0.41
PTPRF-205ENST00000414879 MTFR1Q15390 333 aa12.46□□□□□ -0.41
PTPRF-205ENST00000414879 DEFB115Q30KQ5 88 aa12.46□□□□□ -0.41
PTPRF-205ENST00000414879 PREPLQ4J6C6 727 aaPredicted RBP12.46□□□□□ -0.41
PTPRF-205ENST00000414879 GJB7Q6PEY0 223 aa12.46□□□□□ -0.41
PTPRF-205ENST00000414879 CCDC60Q8IWA6 550 aaPredicted RBP12.46□□□□□ -0.41
PTPRF-205ENST00000414879 MCOLN2Q8IZK6 566 aa12.46□□□□□ -0.41
PTPRF-205ENST00000414879 ZNF606Q8WXB4 792 aa12.46□□□□□ -0.41
PTPRF-205ENST00000414879 BAG2O95816 211 aa12.46□□□□□ -0.42
PTPRF-205ENST00000414879 RPL9P32969 192 aaKnown RBP12.46□□□□□ -0.42
PTPRF-205ENST00000414879 NR2C2P49116 596 aa12.46□□□□□ -0.42
PTPRF-205ENST00000414879 NCKAP1LP55160 1127 aa12.46□□□□□ -0.42
PTPRF-205ENST00000414879 ABCE1P61221 599 aaKnown RBP12.46□□□□□ -0.42
PTPRF-205ENST00000414879 ADCY1Q08828 1119 aa12.46□□□□□ -0.42
PTPRF-205ENST00000414879 PRUNE1Q86TP1 453 aa12.46□□□□□ -0.42
PTPRF-205ENST00000414879 PPTC7Q8NI37 304 aa12.46□□□□□ -0.42
PTPRF-205ENST00000414879 TRPM4Q8TD43 1214 aa12.46□□□□□ -0.42
PTPRF-205ENST00000414879 TNFRSF25Q93038 417 aa12.46□□□□□ -0.42
PTPRF-205ENST00000414879 MTBPQ96DY7 904 aa12.46□□□□□ -0.42
PTPRF-205ENST00000414879 EMILIN2Q9BXX0 1053 aa12.46□□□□□ -0.42
PTPRF-205ENST00000414879 UBXN6Q9BZV1 441 aa12.46□□□□□ -0.42
PTPRF-205ENST00000414879 RAD51CO43502 376 aa12.45□□□□□ -0.42
PTPRF-205ENST00000414879 ATP9BO43861 1147 aa12.45□□□□□ -0.42
PTPRF-205ENST00000414879 SESN2P58004 480 aaPredicted RBP12.45□□□□□ -0.42
PTPRF-205ENST00000414879 PTGISQ16647 500 aa12.45□□□□□ -0.42
PTPRF-205ENST00000414879 IMPG1Q17R60 797 aa12.45□□□□□ -0.42
PTPRF-205ENST00000414879 MEI1Q5TIA1 1274 aa12.45□□□□□ -0.42
PTPRF-205ENST00000414879 ZNF662Q6ZS27 426 aa12.45□□□□□ -0.42
PTPRF-205ENST00000414879 ZNF571Q7Z3V5 609 aaPredicted RBP12.45□□□□□ -0.42
PTPRF-205ENST00000414879 DNAJC19Q96DA6 116 aa12.45□□□□□ -0.42
PTPRF-205ENST00000414879 PABPC5Q96DU9 382 aaKnown RBP12.45□□□□□ -0.42
PTPRF-205ENST00000414879 TGS1Q96RS0 853 aaKnown RBP12.45□□□□□ -0.42
PTPRF-205ENST00000414879 ELAC2Q9BQ52 826 aaKnown RBP12.45□□□□□ -0.42
PTPRF-205ENST00000414879 ST6GALNAC4Q9H4F1 302 aa12.45□□□□□ -0.42
PTPRF-205ENST00000414879 ARHGAP20Q9P2F6 1191 aa12.45□□□□□ -0.42
PTPRF-205ENST00000414879 PPARGC1AQ9UBK2 798 aaKnown RBP12.45□□□□□ -0.42
PTPRF-205ENST00000414879 STK39Q9UEW8 545 aa12.45□□□□□ -0.42
PTPRF-205ENST00000414879 HAUS5O94927 633 aa12.45□□□□□ -0.42
PTPRF-205ENST00000414879 ADCYAP1R1P41586 468 aa12.45□□□□□ -0.42
PTPRF-205ENST00000414879 RENBPP51606 427 aa12.45□□□□□ -0.42
PTPRF-205ENST00000414879 TTC39BQ5VTQ0 682 aaPredicted RBP12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms