RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 BMP6P22004 513 aa20.33■□□□□ 0.85
SF3A1-202ENST00000411423 RFX1P22670 979 aa20.33■□□□□ 0.85
SF3A1-202ENST00000411423 WEE1P30291 646 aa20.33■□□□□ 0.85
SF3A1-202ENST00000411423 ASPAP45381 313 aa20.33■□□□□ 0.85
SF3A1-202ENST00000411423 EDRF1Q3B7T1 1238 aa20.33■□□□□ 0.85
SF3A1-202ENST00000411423 COBLL1Q53SF7 1204 aa20.33■□□□□ 0.85
SF3A1-202ENST00000411423 ANKRD40Q6AI12 368 aa20.33■□□□□ 0.85
SF3A1-202ENST00000411423 PAQR9Q6ZVX9 377 aa20.33■□□□□ 0.85
SF3A1-202ENST00000411423 ZC3H3Q8IXZ2 948 aaKnown RBP20.33■□□□□ 0.85
SF3A1-202ENST00000411423 CMTM8Q8IZV2 173 aa20.33■□□□□ 0.85
SF3A1-202ENST00000411423 B3GALNT2Q8NCR0 500 aa20.33■□□□□ 0.85
SF3A1-202ENST00000411423 TAS1R2Q8TE23 839 aa20.33■□□□□ 0.85
SF3A1-202ENST00000411423 TRMT2BQ96GJ1 504 aaKnown RBP20.33■□□□□ 0.85
SF3A1-202ENST00000411423 SLC22A12Q96S37 553 aa20.33■□□□□ 0.85
SF3A1-202ENST00000411423 MMRN2Q9H8L6 949 aa20.33■□□□□ 0.85
SF3A1-202ENST00000411423 MAN1B1Q9UKM7 699 aa20.33■□□□□ 0.85
SF3A1-202ENST00000411423 CIZ1Q9ULV3 898 aaPredicted RBP20.33■□□□□ 0.85
SF3A1-202ENST00000411423 FAM170BA6NMN3 283 aa20.32■□□□□ 0.84
SF3A1-202ENST00000411423 F8VP50 259 aa20.32■□□□□ 0.84
SF3A1-202ENST00000411423 ZNF263O14978 683 aa20.32■□□□□ 0.84
SF3A1-202ENST00000411423 PSMC2P35998 433 aaKnown RBP20.32■□□□□ 0.84
SF3A1-202ENST00000411423 PIK3CAP42336 1068 aa20.32■□□□□ 0.84
SF3A1-202ENST00000411423 SOX9P48436 509 aa20.32■□□□□ 0.84
SF3A1-202ENST00000411423 UBXN2BQ14CS0 331 aa20.32■□□□□ 0.84
SF3A1-202ENST00000411423 ANGPT1Q15389 498 aa20.32■□□□□ 0.84
SF3A1-202ENST00000411423 SGSM1Q2NKQ1 1148 aa20.32■□□□□ 0.84
SF3A1-202ENST00000411423 VSTM1Q6UX27 236 aa20.32■□□□□ 0.84
SF3A1-202ENST00000411423 INTS8Q75QN2 995 aaKnown RBP20.32■□□□□ 0.84
SF3A1-202ENST00000411423 ADSSL1Q8N142 457 aa20.32■□□□□ 0.84
SF3A1-202ENST00000411423 SEMA4DQ92854 862 aa20.32■□□□□ 0.84
SF3A1-202ENST00000411423 ATOH1Q92858 354 aaPredicted RBP20.32■□□□□ 0.84
SF3A1-202ENST00000411423 IRF7Q92985 503 aa20.32■□□□□ 0.84
SF3A1-202ENST00000411423 USP13Q92995 863 aaPredicted RBP20.32■□□□□ 0.84
SF3A1-202ENST00000411423 SMARCE1Q969G3 411 aa20.32■□□□□ 0.84
SF3A1-202ENST00000411423 SHDQ96IW2 340 aa20.32■□□□□ 0.84
SF3A1-202ENST00000411423 SPATA17Q96L03 361 aa20.32■□□□□ 0.84
SF3A1-202ENST00000411423 GCNAQ96QF7 691 aa20.32■□□□□ 0.84
SF3A1-202ENST00000411423 TRPV5Q9NQA5 729 aa20.32■□□□□ 0.84
SF3A1-202ENST00000411423 RMND1Q9NWS8 449 aa20.32■□□□□ 0.84
SF3A1-202ENST00000411423 MIA3Q5JRA6 1907 aa20.31■□□□□ 0.84
SF3A1-202ENST00000411423 RPL13P26373 211 aaKnown RBP20.31■□□□□ 0.84
SF3A1-202ENST00000411423 GRIK1P39086 918 aa20.31■□□□□ 0.84
SF3A1-202ENST00000411423 MRE11P49959 708 aa20.31■□□□□ 0.84
SF3A1-202ENST00000411423 MAPRE1Q15691 268 aaKnown RBP20.31■□□□□ 0.84
SF3A1-202ENST00000411423 WDR44Q5JSH3 913 aa20.31■□□□□ 0.84
SF3A1-202ENST00000411423 MAML2Q8IZL2 1156 aaPredicted RBP20.31■□□□□ 0.84
SF3A1-202ENST00000411423 TTC8Q8TAM2 541 aa20.31■□□□□ 0.84
SF3A1-202ENST00000411423 E2F7Q96AV8 911 aa20.31■□□□□ 0.84
SF3A1-202ENST00000411423 TWNKQ96RR1 684 aa20.31■□□□□ 0.84
SF3A1-202ENST00000411423 CYP2S1Q96SQ9 504 aa20.31■□□□□ 0.84
SF3A1-202ENST00000411423 OBP2AQ9NY56 170 aa20.31■□□□□ 0.84
SF3A1-202ENST00000411423 ANAPC1Q9H1A4 1944 aa20.31■□□□□ 0.84
SF3A1-202ENST00000411423 C2orf78A6NCI8 922 aa20.3■□□□□ 0.84
SF3A1-202ENST00000411423 CHADO15335 359 aa20.3■□□□□ 0.84
SF3A1-202ENST00000411423 CLSTN1O94985 981 aa20.3■□□□□ 0.84
SF3A1-202ENST00000411423 TNK2Q07912 1038 aa20.3■□□□□ 0.84
SF3A1-202ENST00000411423 ACOT1Q86TX2 421 aa20.3■□□□□ 0.84
SF3A1-202ENST00000411423 MON1AQ86VX9 555 aa20.3■□□□□ 0.84
SF3A1-202ENST00000411423 ELOA2Q8IYF1 753 aaPredicted RBP20.3■□□□□ 0.84
SF3A1-202ENST00000411423 BPIFB1Q8TDL5 484 aa20.3■□□□□ 0.84
SF3A1-202ENST00000411423 CCDC34Q96HJ3 373 aa20.3■□□□□ 0.84
SF3A1-202ENST00000411423 C8orf48Q96LL4 319 aa20.3■□□□□ 0.84
SF3A1-202ENST00000411423 BCO2Q9BYV7 579 aa20.3■□□□□ 0.84
SF3A1-202ENST00000411423 GTSE1Q9NYZ3 720 aa20.3■□□□□ 0.84
SF3A1-202ENST00000411423 PIAS3Q9Y6X2 628 aa20.3■□□□□ 0.84
SF3A1-202ENST00000411423 SMC2O95347 1197 aa20.29■□□□□ 0.84
SF3A1-202ENST00000411423 KRT13P13646 458 aa20.29■□□□□ 0.84
SF3A1-202ENST00000411423 NDST1P52848 882 aa20.29■□□□□ 0.84
SF3A1-202ENST00000411423 ENPEPQ07075 957 aa20.29■□□□□ 0.84
SF3A1-202ENST00000411423 TXNDC11Q6PKC3 985 aa20.29■□□□□ 0.84
SF3A1-202ENST00000411423 FAM35AQ86V20 835 aa20.29■□□□□ 0.84
SF3A1-202ENST00000411423 YAF2Q8IY57 180 aa20.29■□□□□ 0.84
SF3A1-202ENST00000411423 FUKQ8N0W3 1084 aa20.29■□□□□ 0.84
SF3A1-202ENST00000411423 MRPS31Q92665 395 aaKnown RBP20.29■□□□□ 0.84
SF3A1-202ENST00000411423 TAF4BQ92750 862 aa20.29■□□□□ 0.84
SF3A1-202ENST00000411423 KCNK16Q96T55 309 aa20.29■□□□□ 0.84
SF3A1-202ENST00000411423 TTLL2Q9BWV7 592 aa20.29■□□□□ 0.84
SF3A1-202ENST00000411423 TMEM8AQ9HCN3 771 aa20.29■□□□□ 0.84
SF3A1-202ENST00000411423 GCNT4Q9P109 453 aa20.29■□□□□ 0.84
SF3A1-202ENST00000411423 UXTQ9UBK9 157 aaPredicted RBP20.29■□□□□ 0.84
SF3A1-202ENST00000411423 NDRG2Q9UN36 371 aaKnown RBP20.29■□□□□ 0.84
SF3A1-202ENST00000411423 PATJQ8NI35 1801 aa20.29■□□□□ 0.84
SF3A1-202ENST00000411423 CACNA1HO95180 2353 aa20.28■□□□□ 0.84
SF3A1-202ENST00000411423 DPYSL4O14531 572 aa20.28■□□□□ 0.84
SF3A1-202ENST00000411423 TRIM66O15016 1216 aa20.28■□□□□ 0.84
SF3A1-202ENST00000411423 CETN3O15182 167 aa20.28■□□□□ 0.84
SF3A1-202ENST00000411423 BEST1O76090 585 aa20.28■□□□□ 0.84
SF3A1-202ENST00000411423 CCDC130P13994 396 aa20.28■□□□□ 0.84
SF3A1-202ENST00000411423 DDX6P26196 483 aaKnown RBP eCLIP20.28■□□□□ 0.84
SF3A1-202ENST00000411423 NOP14P78316 857 aaKnown RBP20.28■□□□□ 0.84
SF3A1-202ENST00000411423 ZXDBP98169 803 aa20.28■□□□□ 0.84
SF3A1-202ENST00000411423 CBWD6Q4V339 395 aa20.28■□□□□ 0.84
SF3A1-202ENST00000411423 CBWD3Q5JTY5 395 aa20.28■□□□□ 0.84
SF3A1-202ENST00000411423 CBWD5Q5RIA9 395 aa20.28■□□□□ 0.84
SF3A1-202ENST00000411423 TRIM68Q6AZZ1 485 aa20.28■□□□□ 0.84
SF3A1-202ENST00000411423 ZNF852Q6ZMS4 543 aa20.28■□□□□ 0.84
SF3A1-202ENST00000411423 DENND5BQ6ZUT9 1274 aa20.28■□□□□ 0.84
SF3A1-202ENST00000411423 CELF5Q8N6W0 485 aaKnown RBP20.28■□□□□ 0.84
SF3A1-202ENST00000411423 ARL14EPQ8N8R7 260 aaPredicted RBP20.28■□□□□ 0.84
SF3A1-202ENST00000411423 C12orf29Q8N999 325 aa20.28■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms