RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 SPATA21Q7Z572 469 aa14.05□□□□□ -0.16
VPS54-203ENST00000409558 FBF1Q8TES7 1133 aa14.05□□□□□ -0.16
VPS54-203ENST00000409558 OSMRQ99650 979 aa14.05□□□□□ -0.16
VPS54-203ENST00000409558 NPHS2Q9NP85 383 aa14.05□□□□□ -0.16
VPS54-203ENST00000409558 ADAMTS5Q9UNA0 930 aa14.05□□□□□ -0.16
VPS54-203ENST00000409558 ADGRA2Q96PE1 1338 aa14.04□□□□□ -0.16
VPS54-203ENST00000409558 KCNN4O15554 427 aa14.04□□□□□ -0.16
VPS54-203ENST00000409558 CRADDP78560 199 aa14.04□□□□□ -0.16
VPS54-203ENST00000409558 IFRD2Q12894 506 aaPredicted RBP14.04□□□□□ -0.16
VPS54-203ENST00000409558 MDH1BQ5I0G3 518 aa14.04□□□□□ -0.16
VPS54-203ENST00000409558 CENPUQ71F23 418 aa14.04□□□□□ -0.16
VPS54-203ENST00000409558 ARMCX2Q7L311 632 aa14.04□□□□□ -0.16
VPS54-203ENST00000409558 RNF169Q8NCN4 708 aa14.04□□□□□ -0.16
VPS54-203ENST00000409558 IL1RAPL1Q9NZN1 696 aa14.04□□□□□ -0.16
VPS54-203ENST00000409558 MYO18AQ92614 2054 aaKnown RBP14.04□□□□□ -0.16
VPS54-203ENST00000409558 TARSP26639 723 aaKnown RBP14.04□□□□□ -0.16
VPS54-203ENST00000409558 TARBP2Q15633 366 aaKnown RBP14.04□□□□□ -0.16
VPS54-203ENST00000409558 C6orf89Q6UWU4 347 aa14.04□□□□□ -0.16
VPS54-203ENST00000409558 FUKQ8N0W3 1084 aa14.04□□□□□ -0.16
VPS54-203ENST00000409558 PPM1NQ8N819 430 aa14.04□□□□□ -0.16
VPS54-203ENST00000409558 FAF2Q96CS3 445 aa14.04□□□□□ -0.16
VPS54-203ENST00000409558 NIFKQ9BYG3 293 aaKnown RBP14.04□□□□□ -0.16
VPS54-203ENST00000409558 KLHL14Q9P2G3 628 aa14.04□□□□□ -0.16
VPS54-203ENST00000409558 MARCOQ9UEW3 520 aaPredicted RBP14.04□□□□□ -0.16
VPS54-203ENST00000409558 TSPAN16Q9UKR8 245 aa14.04□□□□□ -0.16
VPS54-203ENST00000409558 USP18Q9UMW8 372 aa14.04□□□□□ -0.16
VPS54-203ENST00000409558 USP15Q9Y4E8 981 aaPredicted RBP14.04□□□□□ -0.16
VPS54-203ENST00000409558 BHMG1C9JSJ3 638 aaPredicted RBP14.04□□□□□ -0.16
VPS54-203ENST00000409558 IGF2BP3O00425 579 aaKnown RBP eCLIP14.04□□□□□ -0.16
VPS54-203ENST00000409558 DNALI1O14645 258 aaPredicted RBP14.04□□□□□ -0.16
VPS54-203ENST00000409558 ASAP2O43150 1006 aa14.04□□□□□ -0.16
VPS54-203ENST00000409558 SUN1O94901 812 aa14.04□□□□□ -0.16
VPS54-203ENST00000409558 GBP1P32455 592 aa14.04□□□□□ -0.16
VPS54-203ENST00000409558 RPL22P35268 128 aaKnown RBP14.04□□□□□ -0.16
VPS54-203ENST00000409558 CDKN2BP42772 138 aa14.04□□□□□ -0.16
VPS54-203ENST00000409558 RAD23BP54727 409 aa14.04□□□□□ -0.16
VPS54-203ENST00000409558 VCPP55072 806 aaKnown RBP14.04□□□□□ -0.16
VPS54-203ENST00000409558 BMPR2Q13873 1038 aa14.04□□□□□ -0.16
VPS54-203ENST00000409558 TTLL4Q14679 1199 aa14.04□□□□□ -0.16
VPS54-203ENST00000409558 SLC1A5Q15758 541 aa14.04□□□□□ -0.16
VPS54-203ENST00000409558 RHBDF2Q6PJF5 856 aa14.04□□□□□ -0.16
VPS54-203ENST00000409558 LVRNQ6Q4G3 990 aa14.04□□□□□ -0.16
VPS54-203ENST00000409558 CCDC110Q8TBZ0 833 aa14.04□□□□□ -0.16
VPS54-203ENST00000409558 CCT6BQ92526 530 aa14.04□□□□□ -0.16
VPS54-203ENST00000409558 XYLT2Q9H1B5 865 aa14.04□□□□□ -0.16
VPS54-203ENST00000409558 ZBTB42B2RXF5 422 aa14.04□□□□□ -0.16
VPS54-203ENST00000409558 ACKR2O00590 384 aa14.04□□□□□ -0.16
VPS54-203ENST00000409558 SNX3O60493 162 aa14.04□□□□□ -0.16
VPS54-203ENST00000409558 ADRA1DP25100 572 aa14.04□□□□□ -0.16
VPS54-203ENST00000409558 ERP27Q96DN0 273 aa14.04□□□□□ -0.16
VPS54-203ENST00000409558 ATXN7L3BQ96GX2 97 aa14.04□□□□□ -0.16
VPS54-203ENST00000409558 SERPINB12Q96P63 405 aa14.04□□□□□ -0.16
VPS54-203ENST00000409558 TMPRSS4Q9NRS4 437 aa14.04□□□□□ -0.16
VPS54-203ENST00000409558 MCF2LO15068 1137 aa14.03□□□□□ -0.16
VPS54-203ENST00000409558 PRPSAP2O60256 369 aa14.03□□□□□ -0.16
VPS54-203ENST00000409558 WDR4P57081 412 aaKnown RBP14.03□□□□□ -0.16
VPS54-203ENST00000409558 RTP1P59025 263 aa14.03□□□□□ -0.16
VPS54-203ENST00000409558 CTU1Q7Z7A3 348 aaKnown RBP14.03□□□□□ -0.16
VPS54-203ENST00000409558 PARP9Q8IXQ6 854 aa14.03□□□□□ -0.16
VPS54-203ENST00000409558 DHX35Q9H5Z1 703 aaKnown RBP14.03□□□□□ -0.16
VPS54-203ENST00000409558 MCM3APO60318 1980 aa14.03□□□□□ -0.16
VPS54-203ENST00000409558 DYNC1LI2O43237 492 aaPredicted RBP14.03□□□□□ -0.16
VPS54-203ENST00000409558 MAN1A1P33908 653 aa14.03□□□□□ -0.16
VPS54-203ENST00000409558 TMEM132DQ14C87 1099 aa14.03□□□□□ -0.16
VPS54-203ENST00000409558 GOLGA7BQ2TAP0 167 aa14.03□□□□□ -0.16
VPS54-203ENST00000409558 ARHGEF18Q6ZSZ5 1173 aa14.03□□□□□ -0.16
VPS54-203ENST00000409558 CATSPER4Q7RTX7 472 aa14.03□□□□□ -0.16
VPS54-203ENST00000409558 LRRC8CQ8TDW0 803 aa14.03□□□□□ -0.16
VPS54-203ENST00000409558 SLC10A4Q96EP9 437 aa14.03□□□□□ -0.16
VPS54-203ENST00000409558 C12orf42Q96LP6 360 aa14.03□□□□□ -0.16
VPS54-203ENST00000409558 SMARCAD1Q9H4L7 1026 aa14.03□□□□□ -0.16
VPS54-203ENST00000409558 ZNFX1Q9P2E3 1918 aaKnown RBP14.03□□□□□ -0.16
VPS54-203ENST00000409558 TMEM63AO94886 807 aa14.03□□□□□ -0.16
VPS54-203ENST00000409558 ACAT1P24752 427 aaKnown RBP14.03□□□□□ -0.16
VPS54-203ENST00000409558 ATP5DP30049 168 aa14.03□□□□□ -0.16
VPS54-203ENST00000409558 YWHAEP62258 255 aaKnown RBP14.03□□□□□ -0.16
VPS54-203ENST00000409558 GHRHRQ02643 423 aa14.03□□□□□ -0.16
VPS54-203ENST00000409558 SNCBQ16143 134 aa14.03□□□□□ -0.16
VPS54-203ENST00000409558 GPC2Q8N158 579 aa14.03□□□□□ -0.16
VPS54-203ENST00000409558 SLC4A11Q8NBS3 891 aa14.03□□□□□ -0.16
VPS54-203ENST00000409558 P3H4Q92791 437 aa14.03□□□□□ -0.16
VPS54-203ENST00000409558 TTLL3Q9Y4R7 772 aa14.03□□□□□ -0.16
VPS54-203ENST00000409558 ATG7O95352 703 aa14.02□□□□□ -0.16
VPS54-203ENST00000409558 LGALS2P05162 132 aa14.02□□□□□ -0.16
VPS54-203ENST00000409558 KDELR1P24390 212 aa14.02□□□□□ -0.16
VPS54-203ENST00000409558 PIGHQ14442 188 aaPredicted RBP14.02□□□□□ -0.16
VPS54-203ENST00000409558 CA9Q16790 459 aa14.02□□□□□ -0.16
VPS54-203ENST00000409558 ZPBP2Q6X784 338 aa14.02□□□□□ -0.16
VPS54-203ENST00000409558 FITM2Q8N6M3 262 aa14.02□□□□□ -0.16
VPS54-203ENST00000409558 ALLCQ8N6M5 410 aa14.02□□□□□ -0.16
VPS54-203ENST00000409558 C12orf50Q8NA57 414 aaPredicted RBP14.02□□□□□ -0.16
VPS54-203ENST00000409558 TMEM176AQ96HP8 235 aa14.02□□□□□ -0.16
VPS54-203ENST00000409558 DPEP3Q9H4B8 488 aa14.02□□□□□ -0.16
VPS54-203ENST00000409558 CDHR5Q9HBB8 845 aa14.02□□□□□ -0.16
VPS54-203ENST00000409558 ETNK1Q9HBU6 452 aa14.02□□□□□ -0.16
VPS54-203ENST00000409558 FAM47DPA6NHR8 397 aa14.02□□□□□ -0.16
VPS54-203ENST00000409558 CCDC130P13994 396 aa14.02□□□□□ -0.16
VPS54-203ENST00000409558 KLRC2P26717 231 aa14.02□□□□□ -0.16
VPS54-203ENST00000409558 ADORA2AP29274 412 aa14.02□□□□□ -0.16
VPS54-203ENST00000409558 IL9RQ01113 521 aa14.02□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms