RNA–Protein interactions for RNA: ENST00000407082.3

SMARCB1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 5 BASIC

Gene SMARCB1, Length 1,182 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-203ENST00000407082 NUP85Q9BW27 656 aa13.67□□□□□ -0.22
SMARCB1-203ENST00000407082 APOL5Q9BWW9 433 aa13.67□□□□□ -0.22
SMARCB1-203ENST00000407082 MRPL4Q9BYD3 311 aaKnown RBP13.67□□□□□ -0.22
SMARCB1-203ENST00000407082 NFKBIZQ9BYH8 718 aa13.67□□□□□ -0.22
SMARCB1-203ENST00000407082 MINDY3Q9H8M7 445 aa13.67□□□□□ -0.22
SMARCB1-203ENST00000407082 AGO3Q9H9G7 860 aaKnown RBP13.67□□□□□ -0.22
SMARCB1-203ENST00000407082 HOMER3Q9NSC5 361 aa13.67□□□□□ -0.22
SMARCB1-203ENST00000407082 PADI3Q9ULW8 664 aa13.67□□□□□ -0.22
SMARCB1-203ENST00000407082 PCDHA3Q9Y5H8 950 aa13.67□□□□□ -0.22
SMARCB1-203ENST00000407082 MRPL42Q9Y6G3 142 aaKnown RBP13.67□□□□□ -0.22
SMARCB1-203ENST00000407082 PRR23AA6NEV1 266 aa13.66□□□□□ -0.22
SMARCB1-203ENST00000407082 INO80B-WBP1J3KQ70 363 aa13.66□□□□□ -0.22
SMARCB1-203ENST00000407082 AGPSO00116 658 aa13.66□□□□□ -0.22
SMARCB1-203ENST00000407082 GALR2O43603 387 aaPredicted RBP13.66□□□□□ -0.22
SMARCB1-203ENST00000407082 HLA-DRAP01903 254 aa13.66□□□□□ -0.22
SMARCB1-203ENST00000407082 C4BPAP04003 597 aaKnown RBP13.66□□□□□ -0.22
SMARCB1-203ENST00000407082 MMEP08473 750 aa13.66□□□□□ -0.22
SMARCB1-203ENST00000407082 FGFR4P22455 802 aa13.66□□□□□ -0.22
SMARCB1-203ENST00000407082 DR1Q01658 176 aa13.66□□□□□ -0.22
SMARCB1-203ENST00000407082 NFX1Q12986 1120 aaKnown RBP13.66□□□□□ -0.22
SMARCB1-203ENST00000407082 MESDQ14696 234 aa13.66□□□□□ -0.22
SMARCB1-203ENST00000407082 ZSCAN26Q16670 478 aa13.66□□□□□ -0.22
SMARCB1-203ENST00000407082 CDCA2Q69YH5 1023 aaPredicted RBP13.66□□□□□ -0.22
SMARCB1-203ENST00000407082 SYDE1Q6ZW31 735 aaPredicted RBP13.66□□□□□ -0.22
SMARCB1-203ENST00000407082 ERMP1Q7Z2K6 904 aa13.66□□□□□ -0.22
SMARCB1-203ENST00000407082 FAM228AQ86W67 206 aa13.66□□□□□ -0.22
SMARCB1-203ENST00000407082 IFNLR1Q8IU57 520 aaPredicted RBP13.66□□□□□ -0.22
SMARCB1-203ENST00000407082 FAXDC2Q96IV6 333 aa13.66□□□□□ -0.22
SMARCB1-203ENST00000407082 RIPOR3Q96MK2 946 aa13.66□□□□□ -0.22
SMARCB1-203ENST00000407082 AP1M1Q9BXS5 423 aa13.66□□□□□ -0.22
SMARCB1-203ENST00000407082 TSPYL1Q9H0U9 437 aa13.66□□□□□ -0.22
SMARCB1-203ENST00000407082 TAS2R14Q9NYV8 317 aa13.66□□□□□ -0.22
SMARCB1-203ENST00000407082 RBAKQ9NYW8 714 aaPredicted RBP13.66□□□□□ -0.22
SMARCB1-203ENST00000407082 MTRF1LQ9UGC7 380 aaKnown RBP13.66□□□□□ -0.22
SMARCB1-203ENST00000407082 ST3GAL5Q9UNP4 418 aa13.66□□□□□ -0.22
SMARCB1-203ENST00000407082 SCINQ9Y6U3 715 aa13.66□□□□□ -0.22
SMARCB1-203ENST00000407082 FAM186AA6NE01 2351 aa13.66□□□□□ -0.22
SMARCB1-203ENST00000407082 A0A0B4J269 797 aa13.65□□□□□ -0.22
SMARCB1-203ENST00000407082 ERICH4A6NGS2 130 aa13.65□□□□□ -0.22
SMARCB1-203ENST00000407082 PROB1E7EW31 1015 aa13.65□□□□□ -0.22
SMARCB1-203ENST00000407082 CLDN3O15551 220 aa13.65□□□□□ -0.22
SMARCB1-203ENST00000407082 DGKIO75912 1065 aa13.65□□□□□ -0.22
SMARCB1-203ENST00000407082 GLP2RO95838 553 aa13.65□□□□□ -0.22
SMARCB1-203ENST00000407082 CTNNA1P35221 906 aaKnown RBP13.65□□□□□ -0.22
SMARCB1-203ENST00000407082 NSFP46459 744 aaKnown RBP13.65□□□□□ -0.22
SMARCB1-203ENST00000407082 FNTAP49354 379 aa13.65□□□□□ -0.22
SMARCB1-203ENST00000407082 SKOR1P84550 965 aa13.65□□□□□ -0.22
SMARCB1-203ENST00000407082 POU5F1Q01860 360 aaKnown RBP13.65□□□□□ -0.22
SMARCB1-203ENST00000407082 MBTD1Q05BQ5 628 aa13.65□□□□□ -0.22
SMARCB1-203ENST00000407082 SPOUT1Q5T280 376 aaKnown RBP13.65□□□□□ -0.22
SMARCB1-203ENST00000407082 CATSPER4Q7RTX7 472 aa13.65□□□□□ -0.22
SMARCB1-203ENST00000407082 SLC47A2Q86VL8 602 aa13.65□□□□□ -0.22
SMARCB1-203ENST00000407082 ZNF689Q96CS4 500 aaPredicted RBP13.65□□□□□ -0.22
SMARCB1-203ENST00000407082 GDAP1L1Q96MZ0 367 aa13.65□□□□□ -0.22
SMARCB1-203ENST00000407082 ZIM3Q96PE6 472 aa13.65□□□□□ -0.22
SMARCB1-203ENST00000407082 PCDHB18PQ96TA0 734 aa13.65□□□□□ -0.22
SMARCB1-203ENST00000407082 ERP44Q9BS26 406 aa13.65□□□□□ -0.22
SMARCB1-203ENST00000407082 FAM107BQ9H098 131 aa13.65□□□□□ -0.22
SMARCB1-203ENST00000407082 DDX47Q9H0S4 455 aaKnown RBP13.65□□□□□ -0.22
SMARCB1-203ENST00000407082 ERVK-5Q9HDB9 667 aa13.65□□□□□ -0.22
SMARCB1-203ENST00000407082 CNOT8Q9UFF9 292 aaKnown RBP13.65□□□□□ -0.22
SMARCB1-203ENST00000407082 PCYOX1Q9UHG3 505 aa13.65□□□□□ -0.22
SMARCB1-203ENST00000407082 COL4A6Q14031 1691 aa13.64□□□□□ -0.23
SMARCB1-203ENST00000407082 MYO1FO00160 1098 aa13.64□□□□□ -0.23
SMARCB1-203ENST00000407082 TOM1L1O75674 476 aa13.64□□□□□ -0.23
SMARCB1-203ENST00000407082 MYZAPP0CAP1 466 aa13.64□□□□□ -0.23
SMARCB1-203ENST00000407082 COMTP21964 271 aa13.64□□□□□ -0.23
SMARCB1-203ENST00000407082 CUL2Q13617 745 aa13.64□□□□□ -0.23
SMARCB1-203ENST00000407082 PCBP1Q15365 356 aaKnown RBP eCLIP13.64□□□□□ -0.233e-10■■■□□ 18.2
SMARCB1-203ENST00000407082 MAPK6Q16659 721 aa13.64□□□□□ -0.23
SMARCB1-203ENST00000407082 KYAT1Q16773 422 aa13.64□□□□□ -0.23
SMARCB1-203ENST00000407082 EMC10Q5UCC4 262 aa13.64□□□□□ -0.23
SMARCB1-203ENST00000407082 CEP128Q6ZU80 1094 aa13.64□□□□□ -0.23
SMARCB1-203ENST00000407082 TAS1R3Q7RTX0 852 aa13.64□□□□□ -0.23
SMARCB1-203ENST00000407082 WDR49Q8IV35 697 aa13.64□□□□□ -0.23
SMARCB1-203ENST00000407082 GRK7Q8WTQ7 553 aa13.64□□□□□ -0.23
SMARCB1-203ENST00000407082 DDX1Q92499 740 aaKnown RBP13.64□□□□□ -0.23
SMARCB1-203ENST00000407082 TATDN2Q93075 761 aa13.64□□□□□ -0.23
SMARCB1-203ENST00000407082 NKD2Q969F2 451 aaPredicted RBP13.64□□□□□ -0.23
SMARCB1-203ENST00000407082 CAPS2Q9BXY5 557 aa13.64□□□□□ -0.23
SMARCB1-203ENST00000407082 FZD8Q9H461 694 aa13.64□□□□□ -0.23
SMARCB1-203ENST00000407082 GOLPH3Q9H4A6 298 aa13.64□□□□□ -0.23
SMARCB1-203ENST00000407082 AMACRQ9UHK6 382 aa13.64□□□□□ -0.23
SMARCB1-203ENST00000407082 SRRM3A6NNA2 597 aaPredicted RBP13.63□□□□□ -0.23
SMARCB1-203ENST00000407082 TMEM110-MUSTN1A8MSY1 372 aa13.63□□□□□ -0.23
SMARCB1-203ENST00000407082 NDC80O14777 642 aa13.63□□□□□ -0.23
SMARCB1-203ENST00000407082 SHOX2O60902 331 aaPredicted RBP13.63□□□□□ -0.23
SMARCB1-203ENST00000407082 PRKCBP05771 671 aa13.63□□□□□ -0.23
SMARCB1-203ENST00000407082 UNGP13051 313 aaPredicted RBP13.63□□□□□ -0.23
SMARCB1-203ENST00000407082 PEX5P50542 639 aa13.63□□□□□ -0.23
SMARCB1-203ENST00000407082 GUCY2FP51841 1108 aa13.63□□□□□ -0.23
SMARCB1-203ENST00000407082 NUBP1P53384 320 aa13.63□□□□□ -0.23
SMARCB1-203ENST00000407082 PTP4A2Q12974 167 aa13.63□□□□□ -0.23
SMARCB1-203ENST00000407082 CYP1B1Q16678 543 aa13.63□□□□□ -0.23
SMARCB1-203ENST00000407082 SGSM1Q2NKQ1 1148 aa13.63□□□□□ -0.23
SMARCB1-203ENST00000407082 AGBL2Q5U5Z8 902 aa13.63□□□□□ -0.23
SMARCB1-203ENST00000407082 BRSK2Q8IWQ3 736 aa13.63□□□□□ -0.23
SMARCB1-203ENST00000407082 MCOLN2Q8IZK6 566 aa13.63□□□□□ -0.23
SMARCB1-203ENST00000407082 TSEN2Q8NCE0 465 aaKnown RBP13.63□□□□□ -0.23
SMARCB1-203ENST00000407082 KREMEN2Q8NCW0 462 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms