RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 NAGPAQ9UK23 515 aa19.12■□□□□ 0.65
SDC1-203ENST00000403076 WDR27A2RRH5 827 aa19.11■□□□□ 0.65
SDC1-203ENST00000403076 MTMR11A4FU01 709 aa19.11■□□□□ 0.65
SDC1-203ENST00000403076 RTN2O75298 545 aa19.11■□□□□ 0.65
SDC1-203ENST00000403076 ADH1AP07327 375 aa19.11■□□□□ 0.65
SDC1-203ENST00000403076 CNPP09543 421 aaKnown RBP19.11■□□□□ 0.65
SDC1-203ENST00000403076 SETSIPP0DME0 302 aa19.11■□□□□ 0.65
SDC1-203ENST00000403076 GZMAP12544 262 aa19.11■□□□□ 0.65
SDC1-203ENST00000403076 CYP2F1P24903 491 aa19.11■□□□□ 0.65
SDC1-203ENST00000403076 NOMO3P69849 1222 aa19.11■□□□□ 0.65
SDC1-203ENST00000403076 KRT83P78385 493 aa19.11■□□□□ 0.65
SDC1-203ENST00000403076 PDE4CQ08493 712 aa19.11■□□□□ 0.65
SDC1-203ENST00000403076 RAB33AQ14088 237 aa19.11■□□□□ 0.65
SDC1-203ENST00000403076 LRIT3Q3SXY7 679 aa19.11■□□□□ 0.65
SDC1-203ENST00000403076 PDE12Q6L8Q7 609 aaKnown RBP19.11■□□□□ 0.65
SDC1-203ENST00000403076 SCN4BQ8IWT1 228 aa19.11■□□□□ 0.65
SDC1-203ENST00000403076 MRPL43Q8N983 215 aaKnown RBP19.11■□□□□ 0.65
SDC1-203ENST00000403076 OLIG1Q8TAK6 271 aa19.11■□□□□ 0.65
SDC1-203ENST00000403076 GDPD5Q8WTR4 605 aa19.11■□□□□ 0.65
SDC1-203ENST00000403076 C2orf15Q8WU43 125 aaKnown RBP19.11■□□□□ 0.65
SDC1-203ENST00000403076 FUBP3Q96I24 572 aaKnown RBP eCLIP19.11■□□□□ 0.65
SDC1-203ENST00000403076 DESI2Q9BSY9 194 aa19.11■□□□□ 0.65
SDC1-203ENST00000403076 LMAN2LQ9H0V9 348 aa19.11■□□□□ 0.65
SDC1-203ENST00000403076 ST7Q9NRC1 585 aa19.11■□□□□ 0.65
SDC1-203ENST00000403076 TAS2R14Q9NYV8 317 aa19.11■□□□□ 0.65
SDC1-203ENST00000403076 IRAK3Q9Y616 596 aa19.11■□□□□ 0.65
SDC1-203ENST00000403076 TNRC18O15417 2968 aaPredicted RBP19.11■□□□□ 0.65
SDC1-203ENST00000403076 C2orf71A6NGG8 1288 aa19.1■□□□□ 0.65
SDC1-203ENST00000403076 NPR3P17342 541 aa19.1■□□□□ 0.65
SDC1-203ENST00000403076 KLRC2P26717 231 aa19.1■□□□□ 0.65
SDC1-203ENST00000403076 GRIK1P39086 918 aa19.1■□□□□ 0.65
SDC1-203ENST00000403076 GPD2P43304 727 aa19.1■□□□□ 0.65
SDC1-203ENST00000403076 MAGEA1P43355 309 aa19.1■□□□□ 0.65
SDC1-203ENST00000403076 MAP3K7CLP57077 242 aa19.1■□□□□ 0.65
SDC1-203ENST00000403076 ADCY1Q08828 1119 aa19.1■□□□□ 0.65
SDC1-203ENST00000403076 TPGS2Q68CL5 300 aa19.1■□□□□ 0.65
SDC1-203ENST00000403076 ACAD10Q6JQN1 1059 aa19.1■□□□□ 0.65
SDC1-203ENST00000403076 PPP1R2P3Q6NXS1 205 aa19.1■□□□□ 0.65
SDC1-203ENST00000403076 TOGARAM2Q6ZUX3 1019 aa19.1■□□□□ 0.65
SDC1-203ENST00000403076 MSANTD4Q8NCY6 345 aa19.1■□□□□ 0.65
SDC1-203ENST00000403076 ACRBPQ8NEB7 543 aa19.1■□□□□ 0.65
SDC1-203ENST00000403076 ZNF461Q8TAF7 563 aa19.1■□□□□ 0.65
SDC1-203ENST00000403076 KLHL5Q96PQ7 755 aa19.1■□□□□ 0.65
SDC1-203ENST00000403076 SYNCQ9H7C4 482 aa19.1■□□□□ 0.65
SDC1-203ENST00000403076 AFF4Q9UHB7 1163 aaKnown RBP19.1■□□□□ 0.65
SDC1-203ENST00000403076 PCDHGC5Q9Y5F6 944 aa19.1■□□□□ 0.65
SDC1-203ENST00000403076 HIDE1A8MVS5 230 aa19.1■□□□□ 0.65
SDC1-203ENST00000403076 FSCN2O14926 492 aa19.1■□□□□ 0.65
SDC1-203ENST00000403076 FTLP02792 175 aaPredicted RBP19.1■□□□□ 0.65
SDC1-203ENST00000403076 UNGP13051 313 aaPredicted RBP19.1■□□□□ 0.65
SDC1-203ENST00000403076 ELF1P32519 619 aa19.1■□□□□ 0.65
SDC1-203ENST00000403076 CDH5P33151 784 aaPredicted RBP19.1■□□□□ 0.65
SDC1-203ENST00000403076 IRS1P35568 1242 aa19.1■□□□□ 0.65
SDC1-203ENST00000403076 CAMK1Q14012 370 aa19.1■□□□□ 0.65
SDC1-203ENST00000403076 CFAP221Q4G0U5 840 aa19.1■□□□□ 0.65
SDC1-203ENST00000403076 PKDCCQ504Y2 493 aa19.1■□□□□ 0.65
SDC1-203ENST00000403076 CLEC20AQ6ZU45 233 aa19.1■□□□□ 0.65
SDC1-203ENST00000403076 ERICH1Q86X53 443 aa19.1■□□□□ 0.65
SDC1-203ENST00000403076 WDTC1Q8N5D0 677 aa19.1■□□□□ 0.65
SDC1-203ENST00000403076 ABCB6Q9NP58 842 aa19.1■□□□□ 0.65
SDC1-203ENST00000403076 DMAP1Q9NPF5 467 aaPredicted RBP19.1■□□□□ 0.65
SDC1-203ENST00000403076 SLC27A5Q9Y2P5 690 aa19.1■□□□□ 0.65
SDC1-203ENST00000403076 EPOPA6NHQ4 379 aa19.09■□□□□ 0.65
SDC1-203ENST00000403076 RFXAPO00287 272 aa19.09■□□□□ 0.65
SDC1-203ENST00000403076 XPO1O14980 1071 aaKnown RBP19.09■□□□□ 0.65
SDC1-203ENST00000403076 LCA5LO95447 670 aa19.09■□□□□ 0.65
SDC1-203ENST00000403076 RGS7P49802 495 aa19.09■□□□□ 0.65
SDC1-203ENST00000403076 CENPCQ03188 943 aa19.09■□□□□ 0.65
SDC1-203ENST00000403076 DUSP4Q13115 394 aa19.09■□□□□ 0.65
SDC1-203ENST00000403076 MGAT5BQ3V5L5 792 aa19.09■□□□□ 0.65
SDC1-203ENST00000403076 C10orf76Q5T2E6 689 aa19.09■□□□□ 0.65
SDC1-203ENST00000403076 PRPF38BQ5VTL8 546 aaKnown RBP19.09■□□□□ 0.65
SDC1-203ENST00000403076 VSTM1Q6UX27 236 aa19.09■□□□□ 0.65
SDC1-203ENST00000403076 KIAA1328Q86T90 577 aa19.09■□□□□ 0.65
SDC1-203ENST00000403076 DNAAF5Q86Y56 855 aa19.09■□□□□ 0.65
SDC1-203ENST00000403076 IPO4Q8TEX9 1081 aaKnown RBP19.09■□□□□ 0.65
SDC1-203ENST00000403076 SLC35F5Q8WV83 523 aa19.09■□□□□ 0.65
SDC1-203ENST00000403076 PPP1R13BQ96KQ4 1090 aa19.09■□□□□ 0.65
SDC1-203ENST00000403076 KCNK16Q96T55 309 aa19.09■□□□□ 0.65
SDC1-203ENST00000403076 SEPT5Q99719 369 aaPredicted RBP19.09■□□□□ 0.65
SDC1-203ENST00000403076 SMOQ99835 787 aa19.09■□□□□ 0.65
SDC1-203ENST00000403076 ZNF576Q9H609 170 aa19.09■□□□□ 0.65
SDC1-203ENST00000403076 PCDHA13Q9Y5I0 950 aa19.09■□□□□ 0.65
SDC1-203ENST00000403076 TULP2O00295 520 aa19.08■□□□□ 0.64
SDC1-203ENST00000403076 ZNF263O14978 683 aa19.08■□□□□ 0.64
SDC1-203ENST00000403076 BEST1O76090 585 aa19.08■□□□□ 0.64
SDC1-203ENST00000403076 ABLIM3O94929 683 aa19.08■□□□□ 0.64
SDC1-203ENST00000403076 H2AFZP0C0S5 128 aa19.08■□□□□ 0.64
SDC1-203ENST00000403076 ATF2P15336 505 aa19.08■□□□□ 0.64
SDC1-203ENST00000403076 MAGEA11P43364 429 aa19.08■□□□□ 0.64
SDC1-203ENST00000403076 SNX16P57768 344 aa19.08■□□□□ 0.64
SDC1-203ENST00000403076 PDCLQ13371 301 aa19.08■□□□□ 0.64
SDC1-203ENST00000403076 PTPROQ16827 1216 aa19.08■□□□□ 0.64
SDC1-203ENST00000403076 H2AFVQ71UI9 128 aa19.08■□□□□ 0.64
SDC1-203ENST00000403076 PIGZQ86VD9 579 aa19.08■□□□□ 0.64
SDC1-203ENST00000403076 C11orf70Q9BRQ4 267 aa19.08■□□□□ 0.64
SDC1-203ENST00000403076 ISCUQ9H1K1 167 aa19.08■□□□□ 0.64
SDC1-203ENST00000403076 CYP4F11Q9HBI6 524 aa19.08■□□□□ 0.64
SDC1-203ENST00000403076 ADAM22Q9P0K1 906 aa19.08■□□□□ 0.64
SDC1-203ENST00000403076 CYTH4Q9UIA0 394 aa19.08■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms