RNA–Protein interactions for RNA: ENST00000399455.2

USP47-203, Transcript of ubiquitin specific peptidase 47, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP47, Length 7,396 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-203ENST00000399455 MCOLN3Q8TDD5 553 aa8.28□□□□□ -1.08
USP47-203ENST00000399455 CORO1BQ9BR76 489 aa8.28□□□□□ -1.08
USP47-203ENST00000399455 MTMR12Q9C0I1 747 aa8.28□□□□□ -1.08
USP47-203ENST00000399455 LOC102724159A0A0B4J2E5 919 aa8.28□□□□□ -1.08
USP47-203ENST00000399455 SOWAHDA6NJG2 315 aa8.28□□□□□ -1.08
USP47-203ENST00000399455 SPECC1L-ADORA2AF8WAN1 911 aa8.28□□□□□ -1.08
USP47-203ENST00000399455 ARP10275 920 aa8.28□□□□□ -1.08
USP47-203ENST00000399455 ABCE1P61221 599 aaKnown RBP8.28□□□□□ -1.08
USP47-203ENST00000399455 DHX9Q08211 1270 aaKnown RBP8.28□□□□□ -1.08
USP47-203ENST00000399455 ITGA7Q13683 1181 aa8.28□□□□□ -1.08
USP47-203ENST00000399455 PWP2Q15269 919 aaKnown RBP8.28□□□□□ -1.08
USP47-203ENST00000399455 MAPRE2Q15555 327 aa8.28□□□□□ -1.08
USP47-203ENST00000399455 SLC39A12Q504Y0 691 aa8.28□□□□□ -1.08
USP47-203ENST00000399455 DACT3Q96B18 629 aaPredicted RBP8.28□□□□□ -1.08
USP47-203ENST00000399455 TRIM9Q9C026 710 aa8.28□□□□□ -1.08
USP47-203ENST00000399455 BRD2P25440 801 aaKnown RBP8.28□□□□□ -1.08
USP47-203ENST00000399455 CRYBB1P53674 252 aaPredicted RBP8.28□□□□□ -1.08
USP47-203ENST00000399455 SMARCB1Q12824 385 aa8.28□□□□□ -1.08
USP47-203ENST00000399455 ACOX1Q15067 660 aa8.28□□□□□ -1.08
USP47-203ENST00000399455 SPDYAQ5MJ70 313 aa8.28□□□□□ -1.08
USP47-203ENST00000399455 FAM46CQ5VWP2 391 aa8.28□□□□□ -1.08
USP47-203ENST00000399455 ZDHHC17Q8IUH5 632 aa8.28□□□□□ -1.08
USP47-203ENST00000399455 WDR75Q8IWA0 830 aaKnown RBP8.28□□□□□ -1.08
USP47-203ENST00000399455 ZNF655Q8N720 491 aaPredicted RBP8.28□□□□□ -1.08
USP47-203ENST00000399455 IPMKQ8NFU5 416 aa8.28□□□□□ -1.08
USP47-203ENST00000399455 ABHD10Q9NUJ1 306 aa8.28□□□□□ -1.08
USP47-203ENST00000399455 OGFRQ9NZT2 677 aa8.28□□□□□ -1.08
USP47-203ENST00000399455 TMEM63CQ9P1W3 806 aa8.28□□□□□ -1.08
USP47-203ENST00000399455 ZNF536O15090 1300 aa8.28□□□□□ -1.08
USP47-203ENST00000399455 A0A1W2PQC6 194 aa8.28□□□□□ -1.08
USP47-203ENST00000399455 SMAPO00193 183 aa8.28□□□□□ -1.08
USP47-203ENST00000399455 OPLAHO14841 1288 aa8.28□□□□□ -1.08
USP47-203ENST00000399455 NDUFB5O43674 189 aa8.28□□□□□ -1.08
USP47-203ENST00000399455 KRT16P08779 473 aa8.28□□□□□ -1.08
USP47-203ENST00000399455 USP17L7P0C7H9 530 aa8.28□□□□□ -1.08
USP47-203ENST00000399455 METTL3Q86U44 580 aaKnown RBP8.28□□□□□ -1.08
USP47-203ENST00000399455 CELF4Q9BZC1 486 aaKnown RBP8.28□□□□□ -1.08
USP47-203ENST00000399455 KCNQ5Q9NR82 932 aa8.28□□□□□ -1.08
USP47-203ENST00000399455 PXDNQ92626 1479 aa8.28□□□□□ -1.08
USP47-203ENST00000399455 CCR1P32246 355 aa8.28□□□□□ -1.08
USP47-203ENST00000399455 HDAC4P56524 1084 aa8.28□□□□□ -1.08
USP47-203ENST00000399455 LLGL1Q15334 1064 aa8.28□□□□□ -1.08
USP47-203ENST00000399455 SLFN11Q7Z7L1 901 aa8.28□□□□□ -1.08
USP47-203ENST00000399455 ACOT1Q86TX2 421 aa8.28□□□□□ -1.08
USP47-203ENST00000399455 WDR48Q8TAF3 677 aa8.28□□□□□ -1.08
USP47-203ENST00000399455 FAM163AQ96GL9 167 aaPredicted RBP8.28□□□□□ -1.08
USP47-203ENST00000399455 CHCHD3Q9NX63 227 aaKnown RBP8.28□□□□□ -1.08
USP47-203ENST00000399455 PKD2L2Q9NZM6 624 aa8.28□□□□□ -1.08
USP47-203ENST00000399455 ZFATQ9P243 1243 aa8.28□□□□□ -1.08
USP47-203ENST00000399455 SAE1Q9UBE0 346 aaPredicted RBP8.28□□□□□ -1.08
USP47-203ENST00000399455 FHOD1Q9Y613 1164 aa8.28□□□□□ -1.08
USP47-203ENST00000399455 SEPT4O43236 478 aa8.27□□□□□ -1.08
USP47-203ENST00000399455 APODP05090 189 aa8.27□□□□□ -1.08
USP47-203ENST00000399455 NAA25Q14CX7 972 aa8.27□□□□□ -1.08
USP47-203ENST00000399455 ZC2HC1CQ53FD0 456 aaPredicted RBP8.27□□□□□ -1.08
USP47-203ENST00000399455 PIK3R5Q8WYR1 880 aa8.27□□□□□ -1.08
USP47-203ENST00000399455 SHDQ96IW2 340 aa8.27□□□□□ -1.08
USP47-203ENST00000399455 CAMKK2Q96RR4 588 aa8.27□□□□□ -1.08
USP47-203ENST00000399455 MIR1-1HGQ9H1L0 117 aa8.27□□□□□ -1.08
USP47-203ENST00000399455 OSGEPL1Q9H4B0 414 aa8.27□□□□□ -1.08
USP47-203ENST00000399455 PAK5Q9P286 719 aa8.27□□□□□ -1.08
USP47-203ENST00000399455 TBK1Q9UHD2 729 aa8.27□□□□□ -1.08
USP47-203ENST00000399455 TRMT6Q9UJA5 497 aaKnown RBP8.27□□□□□ -1.08
USP47-203ENST00000399455 FBXO2Q9UK22 296 aaPredicted RBP8.27□□□□□ -1.08
USP47-203ENST00000399455 PACSIN2Q9UNF0 486 aaPredicted RBP8.27□□□□□ -1.08
USP47-203ENST00000399455 ENC1O14682 589 aa8.27□□□□□ -1.09
USP47-203ENST00000399455 U2AF2P26368 475 aaKnown RBP eCLIP8.27□□□□□ -1.098e-8■■□□□ 12.3
USP47-203ENST00000399455 EPHB2P29323 1055 aa8.27□□□□□ -1.09
USP47-203ENST00000399455 PBLDP30039 288 aaPredicted RBP8.27□□□□□ -1.09
USP47-203ENST00000399455 NPTX2P47972 431 aa8.27□□□□□ -1.09
USP47-203ENST00000399455 EFTUD2Q15029 972 aaKnown RBP eCLIP8.27□□□□□ -1.09
USP47-203ENST00000399455 PRAMEF19Q5SWL8 479 aa8.27□□□□□ -1.09
USP47-203ENST00000399455 PPTC7Q8NI37 304 aa8.27□□□□□ -1.09
USP47-203ENST00000399455 FAR2Q96K12 515 aa8.27□□□□□ -1.09
USP47-203ENST00000399455 ZNF518BQ9C0D4 1074 aa8.27□□□□□ -1.09
USP47-203ENST00000399455 BRD9Q9H8M2 597 aa8.27□□□□□ -1.09
USP47-203ENST00000399455 CDV3Q9UKY7 258 aaKnown RBP8.27□□□□□ -1.09
USP47-203ENST00000399455 RHOBTB1O94844 696 aa8.27□□□□□ -1.09
USP47-203ENST00000399455 ARMC2Q8NEN0 867 aa8.27□□□□□ -1.09
USP47-203ENST00000399455 MAML1Q92585 1016 aa8.27□□□□□ -1.09
USP47-203ENST00000399455 PRPF18Q99633 342 aaKnown RBP8.27□□□□□ -1.09
USP47-203ENST00000399455 KNDC1Q76NI1 1749 aa8.27□□□□□ -1.09
USP47-203ENST00000399455 ADGRB1O14514 1584 aa8.27□□□□□ -1.09
USP47-203ENST00000399455 MAGEC1O60732 1142 aa8.27□□□□□ -1.09
USP47-203ENST00000399455 BAG2O95816 211 aa8.27□□□□□ -1.09
USP47-203ENST00000399455 RPL9P32969 192 aaKnown RBP8.27□□□□□ -1.09
USP47-203ENST00000399455 PSEN1P49768 467 aa8.27□□□□□ -1.09
USP47-203ENST00000399455 PDK2Q15119 407 aa8.27□□□□□ -1.09
USP47-203ENST00000399455 ELF2Q15723 593 aa8.27□□□□□ -1.09
USP47-203ENST00000399455 ZBTB41Q5SVQ8 909 aa8.27□□□□□ -1.09
USP47-203ENST00000399455 TRIM55Q9BYV6 548 aa8.27□□□□□ -1.09
USP47-203ENST00000399455 ASB7Q9H672 318 aa8.27□□□□□ -1.09
USP47-203ENST00000399455 NDE1Q9NXR1 346 aa8.27□□□□□ -1.09
USP47-203ENST00000399455 GIT1Q9Y2X7 761 aa8.27□□□□□ -1.09
USP47-203ENST00000399455 MYO5BQ9ULV0 1848 aa8.27□□□□□ -1.09
USP47-203ENST00000399455 SYNDIG1LA6NDD5 238 aa8.27□□□□□ -1.09
USP47-203ENST00000399455 FAM187AA6NFU0 413 aa8.27□□□□□ -1.09
USP47-203ENST00000399455 CSH1P0DML2 217 aa8.27□□□□□ -1.09
USP47-203ENST00000399455 CSH2P0DML3 217 aa8.27□□□□□ -1.09
USP47-203ENST00000399455 ELNP15502 786 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms