RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 PSMD5Q16401 504 aa15.03■□□□□ -0
SKA1-202ENST00000398452 CCAR2Q8N163 923 aaKnown RBP15.03■□□□□ -0
SKA1-202ENST00000398452 ANKRD52Q8NB46 1076 aa15.03■□□□□ -0
SKA1-202ENST00000398452 C1orf131Q8NDD1 294 aaKnown RBP15.03■□□□□ -0
SKA1-202ENST00000398452 FBXO22Q8NEZ5 403 aa15.03■□□□□ -0
SKA1-202ENST00000398452 UBA3Q8TBC4 463 aa15.03■□□□□ -0
SKA1-202ENST00000398452 CPA5Q8WXQ8 436 aa15.03■□□□□ -0
SKA1-202ENST00000398452 ZNF653Q96CK0 615 aa15.03■□□□□ -0
SKA1-202ENST00000398452 PCDHB18PQ96TA0 734 aa15.03■□□□□ -0
SKA1-202ENST00000398452 GAS2L1Q99501 681 aaPredicted RBP15.03■□□□□ -0
SKA1-202ENST00000398452 HNRNPABQ99729 332 aaKnown RBP15.03■□□□□ -0
SKA1-202ENST00000398452 SYT11Q9BT88 431 aa15.03■□□□□ -0
SKA1-202ENST00000398452 ST7Q9NRC1 585 aa15.03■□□□□ -0
SKA1-202ENST00000398452 MRPL17Q9NRX2 175 aaKnown RBP15.03■□□□□ -0
SKA1-202ENST00000398452 ADAM22Q9P0K1 906 aa15.03■□□□□ -0
SKA1-202ENST00000398452 GTF3C4Q9UKN8 822 aa15.03■□□□□ -0
SKA1-202ENST00000398452 STRIP2Q9ULQ0 834 aa15.03■□□□□ -0
SKA1-202ENST00000398452 YBX2Q9Y2T7 364 aaKnown RBP15.03■□□□□ -0
SKA1-202ENST00000398452 PCDHA11Q9Y5I1 949 aa15.03■□□□□ -0
SKA1-202ENST00000398452 ESPNB1AK53 854 aa15.02■□□□□ -0
SKA1-202ENST00000398452 C2CD2LO14523 706 aa15.02■□□□□ -0
SKA1-202ENST00000398452 HCRTO43612 131 aa15.02■□□□□ -0
SKA1-202ENST00000398452 KIF5CO60282 957 aa15.02■□□□□ -0
SKA1-202ENST00000398452 ATP2C2O75185 946 aa15.02■□□□□ -0
SKA1-202ENST00000398452 TMEM253P0C7T8 217 aa15.02■□□□□ -0
SKA1-202ENST00000398452 BMPR1AP36894 532 aa15.02■□□□□ -0
SKA1-202ENST00000398452 NOMO3P69849 1222 aa15.02■□□□□ -0
SKA1-202ENST00000398452 GPC5P78333 572 aa15.02■□□□□ -0
SKA1-202ENST00000398452 PLCB3Q01970 1234 aa15.02■□□□□ -0
SKA1-202ENST00000398452 SLC39A12Q504Y0 691 aa15.02■□□□□ -0
SKA1-202ENST00000398452 DENND1BQ6P3S1 775 aa15.02■□□□□ -0
SKA1-202ENST00000398452 TMEM173Q86WV6 379 aaPredicted RBP15.02■□□□□ -0
SKA1-202ENST00000398452 VPS52Q8N1B4 723 aa15.02■□□□□ -0
SKA1-202ENST00000398452 PIK3R5Q8WYR1 880 aa15.02■□□□□ -0
SKA1-202ENST00000398452 CLP1Q92989 425 aaKnown RBP15.02■□□□□ -0
SKA1-202ENST00000398452 SECISBP2LQ93073 1101 aaKnown RBP15.02■□□□□ -0
SKA1-202ENST00000398452 MYLPFQ96A32 169 aa15.02■□□□□ -0
SKA1-202ENST00000398452 SMARCD1Q96GM5 515 aa15.02■□□□□ -0
SKA1-202ENST00000398452 VCPIP1Q96JH7 1222 aa15.02■□□□□ -0
SKA1-202ENST00000398452 C11orf84Q9BUA3 381 aaPredicted RBP15.02■□□□□ -0
SKA1-202ENST00000398452 ISCUQ9H1K1 167 aa15.02■□□□□ -0
SKA1-202ENST00000398452 SLC28A3Q9HAS3 691 aa15.02■□□□□ -0
SKA1-202ENST00000398452 LZTFL1Q9NQ48 299 aa15.02■□□□□ -0
SKA1-202ENST00000398452 CRTAC1Q9NQ79 661 aa15.02■□□□□ -0
SKA1-202ENST00000398452 PRDM6Q9NQX0 595 aa15.02■□□□□ -0
SKA1-202ENST00000398452 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP15.02■□□□□ -0
SKA1-202ENST00000398452 PCDHB5Q9Y5E4 795 aa15.02■□□□□ -0
SKA1-202ENST00000398452 GBF1Q92538 1859 aa15.01□□□□□ -0.01
SKA1-202ENST00000398452 MYBPHLA2RUH7 354 aa15.01□□□□□ -0.01
SKA1-202ENST00000398452 AP1G2O75843 785 aa15.01□□□□□ -0.01
SKA1-202ENST00000398452 RB1P06400 928 aa15.01□□□□□ -0.01
SKA1-202ENST00000398452 UNGP13051 313 aaPredicted RBP15.01□□□□□ -0.01
SKA1-202ENST00000398452 NPR3P17342 541 aa15.01□□□□□ -0.01
SKA1-202ENST00000398452 DESP17661 470 aa15.01□□□□□ -0.01
SKA1-202ENST00000398452 CDH5P33151 784 aaPredicted RBP15.01□□□□□ -0.01
SKA1-202ENST00000398452 ACADSBP45954 432 aa15.01□□□□□ -0.01
SKA1-202ENST00000398452 NOP2P46087 812 aaKnown RBP15.01□□□□□ -0.01
SKA1-202ENST00000398452 GALCP54803 685 aa15.01□□□□□ -0.01
SKA1-202ENST00000398452 RTP2Q5QGT7 225 aa15.01□□□□□ -0.01
SKA1-202ENST00000398452 FAM35AQ86V20 835 aa15.01□□□□□ -0.01
SKA1-202ENST00000398452 PHF13Q86YI8 300 aaPredicted RBP15.01□□□□□ -0.01
SKA1-202ENST00000398452 RHOT2Q8IXI1 618 aa15.01□□□□□ -0.01
SKA1-202ENST00000398452 MICALL1Q8N3F8 863 aa15.01□□□□□ -0.01
SKA1-202ENST00000398452 KLHL23Q8NBE8 558 aa15.01□□□□□ -0.01
SKA1-202ENST00000398452 OR10T2Q8NGX3 314 aa15.01□□□□□ -0.01
SKA1-202ENST00000398452 C2orf15Q8WU43 125 aaKnown RBP15.01□□□□□ -0.01
SKA1-202ENST00000398452 BCL7CQ8WUZ0 217 aaPredicted RBP15.01□□□□□ -0.01
SKA1-202ENST00000398452 PCED1BQ96HM7 432 aa15.01□□□□□ -0.01
SKA1-202ENST00000398452 PPP1R13BQ96KQ4 1090 aa15.01□□□□□ -0.01
SKA1-202ENST00000398452 CALR3Q96L12 384 aaKnown RBP15.01□□□□□ -0.01
SKA1-202ENST00000398452 B3GALT6Q96L58 329 aa15.01□□□□□ -0.01
SKA1-202ENST00000398452 ALS2CR12Q96Q35 445 aa15.01□□□□□ -0.01
SKA1-202ENST00000398452 TGS1Q96RS0 853 aaKnown RBP15.01□□□□□ -0.01
SKA1-202ENST00000398452 C11orf70Q9BRQ4 267 aa15.01□□□□□ -0.01
SKA1-202ENST00000398452 DUSP16Q9BY84 665 aa15.01□□□□□ -0.01
SKA1-202ENST00000398452 ZCWPW1Q9H0M4 648 aa15.01□□□□□ -0.01
SKA1-202ENST00000398452 LRRC4Q9HBW1 653 aa15.01□□□□□ -0.01
SKA1-202ENST00000398452 MRPL47Q9HD33 250 aaKnown RBP15.01□□□□□ -0.01
SKA1-202ENST00000398452 KRT82Q9NSB4 513 aa15.01□□□□□ -0.01
SKA1-202ENST00000398452 CTTNBP2NLQ9P2B4 639 aa15.01□□□□□ -0.01
SKA1-202ENST00000398452 WDR35Q9P2L0 1181 aa15.01□□□□□ -0.01
SKA1-202ENST00000398452 GUCA1BQ9UMX6 200 aa15.01□□□□□ -0.01
SKA1-202ENST00000398452 NME7Q9Y5B8 376 aa15.01□□□□□ -0.01
SKA1-202ENST00000398452 BACE2Q9Y5Z0 518 aa15.01□□□□□ -0.01
SKA1-202ENST00000398452 SCINQ9Y6U3 715 aa15.01□□□□□ -0.01
SKA1-202ENST00000398452 LINC01553A4QN01 128 aa15□□□□□ -0.01
SKA1-202ENST00000398452 STK25O00506 426 aa15□□□□□ -0.01
SKA1-202ENST00000398452 ZNF263O14978 683 aa15□□□□□ -0.01
SKA1-202ENST00000398452 DSG1Q02413 1049 aa15□□□□□ -0.01
SKA1-202ENST00000398452 UBE3AQ05086 875 aa15□□□□□ -0.01
SKA1-202ENST00000398452 PDE4CQ08493 712 aa15□□□□□ -0.01
SKA1-202ENST00000398452 MRPL58Q14197 206 aaKnown RBP15□□□□□ -0.01
SKA1-202ENST00000398452 FAM171BQ6P995 826 aa15□□□□□ -0.01
SKA1-202ENST00000398452 PRSS55Q6UWB4 352 aaPredicted RBP15□□□□□ -0.01
SKA1-202ENST00000398452 MMS22LQ6ZRQ5 1243 aa15□□□□□ -0.01
SKA1-202ENST00000398452 ZNF662Q6ZS27 426 aa15□□□□□ -0.01
SKA1-202ENST00000398452 TMC7Q7Z402 723 aa15□□□□□ -0.01
SKA1-202ENST00000398452 PALB2Q86YC2 1186 aa15□□□□□ -0.01
SKA1-202ENST00000398452 GPR65Q8IYL9 337 aa15□□□□□ -0.01
SKA1-202ENST00000398452 MCOLN2Q8IZK6 566 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 82.8 ms